3IGEA

Small outer capsid protein (soc) from bacteriophage rb69
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
75
structure length
75
Chain Sequence
b'GGYVNIKTFTHPAGEGKEVKGMEVSVPFEIYSNEHRIADAHYQTFPSEKAAYTTVVTDAADWRTKNAAMFTPTPV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Soc small outer capsid protein
publication title Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages
pubmed doi rcsb
source organism Enterobacteria phage rb69
molecule tags Viral protein
total genus 15
structure length 75
sequence length 75
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16855 Soc Small outer capsid protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.20 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Outer Surface Protein A; domain 3 3igeA00
3IG9A 3IGEA
chains in the Genus database with same CATH superfamily
2OL7A 3CCSE 5JVGE 2I5ZO 3CCEE 4WFBE 1P4PA 1RL6A 3CF5E 3CCLE 1QVFE 3CPWE 5JVHE 1K73G 1M1KG 1S72E 5HL7E 1W2BE 3G6EE 1K8AG 1YIJE 1N8RG 2OTJE 2AF5A 3I55E 3IG9A 1YJWE 4WF9E 5MLCH 4U67E 3J7ZG 1VQ7E 3CMAE 3CD6E 4IO9E 4IOAE 1VQPE 5B10O 1K9MG 5B3MO 1KQSE 5GAHG 2OYBO 2G8CO 3IGEA 3CCME 5GAGG 2OL8O 2OL6O 1RJLC 2OY1O 1KD1G 2QA4E 1VQLE 2OY5O 1YITE 1VQ4E 5AN9B 3I56E 1YI2E 1YJNE 1Q82G 1Q86G 4UY8G 3CC4E 5B2AO 3AUMO 2ZJRE 1NJIG 1Q7YG 4WCEE 3G4SE 2OY7A 1Q81G 5DM6E 4WFNE 3G71E 1JJ2E 3CC7E 2FKJA 1KC8G 5DM7E 4WFAE 1YHQE 3PIOE 1OSPO 2I5VO 2ZJPE 5B11O 2PI3O 1M90G 3CCUE 3CCRE 3PIPE 2QEXE 3CCVE 3CKGA 1QVGE 5GADG 1VQ8E 2FKGA 3OW2E 1YJ9E 3DLLE 2OTLE 1VQKE 5H1SI 2HKDA 3CCJE 2OY8A 1FJ1E 1VQOE 1VQME 3CKFA 5GAEG 2CQLA 3CMEE 1VQ6E 3CXCE 1VQ9E 1VQNE 3CC2E 4IOCE 3EC5A 2ZJQE 1VQ5E 3CCQE
chains in the Genus database with same CATH topology
2OL7A 3CKGA 5B2AO 3AUMO 2I5ZO 2FKGA 5B10O 2OY7A 5B3MO 1P4PA 2OYBO 2G8CO 3IGEA 2HKDA 2OL8O 2OL6O 2OY8A 1RJLC 2FKJA 2OY1O 1FJ1E 1OSPO 2I5VO 2OY5O 3CKFA 5B11O 2PI3O 2AF5A 3IG9A 3EC5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IG9 A;  3IGE A; 
#chains in the Genus database with same CATH topology
 2OL7 A;  3CCS E;  5JVG E;  2I5Z O;  3CCE E;  4WFB E;  1P4P A;  1RL6 A;  3CF5 E;  3CCL E;  1QVF E;  3CPW E;  5JVH E;  1K73 G;  1M1K G;  1S72 E;  5HL7 E;  1W2B E;  3G6E E;  1K8A G;  1YIJ E;  1N8R G;  2OTJ E;  2AF5 A;  3I55 E;  3IG9 A;  1YJW E;  4WF9 E;  5MLC H;  4U67 E;  3J7Z G;  1VQ7 E;  3CMA E;  3CD6 E;  4IO9 E;  4IOA E;  1VQP E;  5B10 O;  1K9M G;  5B3M O;  1KQS E;  5GAH G;  2OYB O;  2G8C O;  3IGE A;  3CCM E;  5GAG G;  2OL8 O;  2OL6 O;  1RJL C;  2OY1 O;  1KD1 G;  2QA4 E;  1VQL E;  2OY5 O;  1YIT E;  1VQ4 E;  5AN9 B;  3I56 E;  1YI2 E;  1YJN E;  1Q82 G;  1Q86 G;  4UY8 G;  3CC4 E;  5B2A O;  3AUM O;  2ZJR E;  1NJI G;  1Q7Y G;  4WCE E;  3G4S E;  2OY7 A;  1Q81 G;  5DM6 E;  4WFN E;  3G71 E;  1JJ2 E;  3CC7 E;  2FKJ A;  1KC8 G;  5DM7 E;  4WFA E;  1YHQ E;  3PIO E;  1OSP O;  2I5V O;  2ZJP E;  5B11 O;  2PI3 O;  1M90 G;  3CCU E;  3CCR E;  3PIP E;  2QEX E;  3CCV E;  3CKG A;  1QVG E;  5GAD G;  1VQ8 E;  2FKG A;  3OW2 E;  1YJ9 E;  3DLL E;  2OTL E;  1VQK E;  5H1S I;  2HKD A;  3CCJ E;  2OY8 A;  1FJ1 E;  1VQO E;  1VQM E;  3CKF A;  5GAE G;  2CQL A;  3CME E;  1VQ6 E;  3CXC E;  1VQ9 E;  1VQN E;  3CC2 E;  4IOC E;  3EC5 A;  2ZJQ E;  1VQ5 E;  3CCQ E; 
#chains in the Genus database with same CATH homology
 2OL7 A;  3CKG A;  5B2A O;  3AUM O;  2I5Z O;  2FKG A;  5B10 O;  2OY7 A;  5B3M O;  1P4P A;  2OYB O;  2G8C O;  3IGE A;  2HKD A;  2OL8 O;  2OL6 O;  2OY8 A;  1RJL C;  2FKJ A;  2OY1 O;  1FJ1 E;  1OSP O;  2I5V O;  2OY5 O;  3CKF A;  5B11 O;  2PI3 O;  2AF5 A;  3IG9 A;  3EC5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...