3IHCA

Crystal structure of mouse bcl-xl (wt) at ph 5.0
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
195
structure length
141
Chain Sequence
SQSNRELVVDFLSYKLSQKGYSWSQFPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Bcl-2-like protein 1
publication title Structural insights into mouse anti-apoptotic Bcl-xl reveal affinity for Beclin 1 and gossypol.
pubmed doi rcsb
source organism Mus musculus
total genus 56
structure length 141
sequence length 195
ec nomenclature
pdb deposition date 2009-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 3ihcA00
4ZBIA 2O2FA 4BPJA 5KU9A 3WIYA 1PQ1A 2M5BA 1G5JA 1LXLA 1F16A 1YSGA 3IIHA 4G35A 1BXLA 1G5MA 4ZEQA 2WH6A 4BDUA 4S0PA 3ILCA 3BL2A 1TY4A 4U2UA 2VOGA 3IHCA 4BD2A 2IMSA 5IEZA 4MI8A 4HW4A 3QBRA 3IO9A 1R2GA 2PQKA 3KJ1A 1YSNA 2W3LA 5FMIA 2KUAA 3IIGA 1R2DA 4BPIA 2VOFA 4QNQA 1OHUA 4ZBFA 2VM6A 5KTGA 3WIXA 4BD7A 4YJ4A 3PK1A 5FC4A 2XA0A 2JM6B 1R2EA 2MHSA 3KJ0A 2YV6A 1PQ0A 5FDOA 1ZY3A 5C6HA 2ABOA 4HW2A 1AF3A 3KJ2A 4ZIHA 4ZIEA 1MK3A 1R2HA 4S0OA 4BD6A 4K5BC 2O2NA 2O22A 3DVUA 2A5YA 4HW3A 1GJHA 3IHDA 4ZIFA 5IF4A 1YSWA 2KBWA 2RODA 1K3KA 3IHEA 1R2IA 2ME8A 4WMRA 4ZIGA 4OQ6A 2JCNA 1O0LA 5C3FA 5FDRA 4BD8A 1DDBA 2VOIA 3KZ0A 5JSBA 2NL9A 2BIDA 2BZWA 2MEJA 2O21A 2V6QA 4B4SA 4OYDA 3I1HA 2IMTA 4U2VA 1WSXA 3MK8A 2XPXA 3MQPA 4YK9A 4QVXA 4OQ5A 2VOHA 1MAZA 2O2MA 1Q59A 3D7VA 4ZIIA 2NLAA 1YSIA 2B48A 2LR1A 2ROCA 2K7WA 3CVAX
chains in the Genus database with same CATH superfamily
4ZBIA 2O2FA 4BPJA 5KU9A 3WIYA 4UF3A 1PQ1A 2M5BA 1G5JA 1LXLA 1F16A 1YSGA 2JBYA 3JRVA 2VTYA 3IIHA 4G35A 1BXLA 1G5MA 4ZEQA 2WH6A 4BDUA 4S0PA 3ILCA 3BL2A 1TY4A 4U2UA 2VOGA 3IHCA 4BD2A 2IMSA 5IEZA 4UF2A 4MI8A 2I39A 4HW4A 3QBRA 3IO9A 1R2GA 2PQKA 3KJ1A 1YSNA 2W3LA 5FMIA 2KUAA 3IIGA 1R2DA 4BPIA 4BBDA 2VOFA 4QNQA 1OHUA 4ZBFA 2VM6A 5KTGA 3WIXA 4BD7A 4YJ4A 4M0SA 4BBBA 3PK1A 5FC4A 2XA0A 2JM6B 1R2EA 2MHSA 3KJ0A 2YV6A 1PQ0A 5FDOA 1ZY3A 5C6HA 2ABOA 4HW2A 1AF3A 3KJ2A 4ZIHA 4ZIEA 1MK3A 2VVYA 1R2HA 4S0OA 4BD6A 4K5BC 2O2NA 2O22A 3DVUA 2A5YA 4HW3A 1GJHA 3IHDA 4ZIFA 5IF4A 1YSWA 2KBWA 2RODA 1K3KA 2VVXA 3IHEA 1R2IA 2VVWA 2ME8A 4WMRA 4ZIGA 4D2LA 4OQ6A 2JCNA 2K36A 1O0LA 5C3FA 5FDRA 4BD8A 1DDBA 2VOIA 3KZ0A 5JSBA 4UF1A 2NL9A 2BIDA 2BZWA 2MEJA 2JBXA 2O21A 2V6QA 4B4SA 4OYDA 3I1HA 4D2MA 2IMTA 4U2VA 1WSXA 3MK8A 2UXEA 2XPXA 3MQPA 4YK9A 4QVXA 4OQ5A 2VOHA 1MAZA 2O2MA 1Q59A 3D7VA 4ZIIA 2NLAA 1YSIA 2B48A 2O42A 2LR1A 2ROCA 4LQKA 2K7WA 4BBCA 3CVAX
chains in the Genus database with same CATH topology
4ZBIA 2O2FA 4BPJA 5KU9A 3WIYA 1PQ1A 2M5BA 1G5JA 1LXLA 1F16A 1YSGA 3IIHA 4G35A 1BXLA 1G5MA 4ZEQA 2WH6A 4BDUA 4S0PA 3ILCA 3BL2A 1TY4A 4U2UA 2VOGA 3IHCA 4BD2A 2IMSA 5IEZA 4MI8A 4HW4A 3QBRA 3IO9A 1R2GA 2PQKA 3KJ1A 1YSNA 2W3LA 5FMIA 2KUAA 3IIGA 1R2DA 4BPIA 2VOFA 4QNQA 1OHUA 4ZBFA 2VM6A 5KTGA 3WIXA 4BD7A 4YJ4A 3PK1A 5FC4A 2XA0A 2JM6B 1R2EA 2MHSA 3KJ0A 2YV6A 1PQ0A 5FDOA 1ZY3A 5C6HA 2ABOA 4HW2A 1AF3A 3KJ2A 4ZIHA 4ZIEA 1MK3A 1R2HA 4S0OA 4BD6A 4K5BC 2O2NA 2O22A 3DVUA 2A5YA 4HW3A 1GJHA 3IHDA 4ZIFA 5IF4A 1YSWA 2KBWA 2RODA 1K3KA 3IHEA 1R2IA 2ME8A 4WMRA 4ZIGA 4OQ6A 2JCNA 1O0LA 5C3FA 5FDRA 4BD8A 1DDBA 2VOIA 3KZ0A 5JSBA 2NL9A 2BIDA 2BZWA 2MEJA 2O21A 2V6QA 4B4SA 4OYDA 3I1HA 2IMTA 4U2VA 1WSXA 3MK8A 2XPXA 3MQPA 4YK9A 4QVXA 4OQ5A 2VOHA 1MAZA 2O2MA 1Q59A 3D7VA 4ZIIA 2NLAA 1YSIA 2B48A 2LR1A 2ROCA 2K7WA 3CVAX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZBI A;  2O2F A;  4BPJ A;  5KU9 A;  3WIY A;  1PQ1 A;  2M5B A;  1G5J A;  1LXL A;  1F16 A;  1YSG A;  3IIH A;  4G35 A;  1BXL A;  1G5M A;  4ZEQ A;  2WH6 A;  4BDU A;  4S0P A;  3ILC A;  3BL2 A;  1TY4 A;  4U2U A;  2VOG A;  3IHC A;  4BD2 A;  2IMS A;  5IEZ A;  4MI8 A;  4HW4 A;  3QBR A;  3IO9 A;  1R2G A;  2PQK A;  3KJ1 A;  1YSN A;  2W3L A;  5FMI A;  2KUA A;  3IIG A;  1R2D A;  4BPI A;  2VOF A;  4QNQ A;  1OHU A;  4ZBF A;  2VM6 A;  5KTG A;  3WIX A;  4BD7 A;  4YJ4 A;  3PK1 A;  5FC4 A;  2XA0 A;  2JM6 B;  1R2E A;  2MHS A;  3KJ0 A;  2YV6 A;  1PQ0 A;  5FDO A;  1ZY3 A;  5C6H A;  2ABO A;  4HW2 A;  1AF3 A;  3KJ2 A;  4ZIH A;  4ZIE A;  1MK3 A;  1R2H A;  4S0O A;  4BD6 A;  4K5B C;  2O2N A;  2O22 A;  3DVU A;  2A5Y A;  4HW3 A;  1GJH A;  3IHD A;  4ZIF A;  5IF4 A;  1YSW A;  2KBW A;  2ROD A;  1K3K A;  3IHE A;  1R2I A;  2ME8 A;  4WMR A;  4ZIG A;  4OQ6 A;  2JCN A;  1O0L A;  5C3F A;  5FDR A;  4BD8 A;  1DDB A;  2VOI A;  3KZ0 A;  5JSB A;  2NL9 A;  2BID A;  2BZW A;  2MEJ A;  2O21 A;  2V6Q A;  4B4S A;  4OYD A;  3I1H A;  2IMT A;  4U2V A;  1WSX A;  3MK8 A;  2XPX A;  3MQP A;  4YK9 A;  4QVX A;  4OQ5 A;  2VOH A;  1MAZ A;  2O2M A;  1Q59 A;  3D7V A;  4ZII A;  2NLA A;  1YSI A;  2B48 A;  2LR1 A;  2ROC A;  2K7W A;  3CVA X; 
#chains in the Genus database with same CATH topology
 4ZBI A;  2O2F A;  4BPJ A;  5KU9 A;  3WIY A;  4UF3 A;  1PQ1 A;  2M5B A;  1G5J A;  1LXL A;  1F16 A;  1YSG A;  2JBY A;  3JRV A;  2VTY A;  3IIH A;  4G35 A;  1BXL A;  1G5M A;  4ZEQ A;  2WH6 A;  4BDU A;  4S0P A;  3ILC A;  3BL2 A;  1TY4 A;  4U2U A;  2VOG A;  3IHC A;  4BD2 A;  2IMS A;  5IEZ A;  4UF2 A;  4MI8 A;  2I39 A;  4HW4 A;  3QBR A;  3IO9 A;  1R2G A;  2PQK A;  3KJ1 A;  1YSN A;  2W3L A;  5FMI A;  2KUA A;  3IIG A;  1R2D A;  4BPI A;  4BBD A;  2VOF A;  4QNQ A;  1OHU A;  4ZBF A;  2VM6 A;  5KTG A;  3WIX A;  4BD7 A;  4YJ4 A;  4M0S A;  4BBB A;  3PK1 A;  5FC4 A;  2XA0 A;  2JM6 B;  1R2E A;  2MHS A;  3KJ0 A;  2YV6 A;  1PQ0 A;  5FDO A;  1ZY3 A;  5C6H A;  2ABO A;  4HW2 A;  1AF3 A;  3KJ2 A;  4ZIH A;  4ZIE A;  1MK3 A;  2VVY A;  1R2H A;  4S0O A;  4BD6 A;  4K5B C;  2O2N A;  2O22 A;  3DVU A;  2A5Y A;  4HW3 A;  1GJH A;  3IHD A;  4ZIF A;  5IF4 A;  1YSW A;  2KBW A;  2ROD A;  1K3K A;  2VVX A;  3IHE A;  1R2I A;  2VVW A;  2ME8 A;  4WMR A;  4ZIG A;  4D2L A;  4OQ6 A;  2JCN A;  2K36 A;  1O0L A;  5C3F A;  5FDR A;  4BD8 A;  1DDB A;  2VOI A;  3KZ0 A;  5JSB A;  4UF1 A;  2NL9 A;  2BID A;  2BZW A;  2MEJ A;  2JBX A;  2O21 A;  2V6Q A;  4B4S A;  4OYD A;  3I1H A;  4D2M A;  2IMT A;  4U2V A;  1WSX A;  3MK8 A;  2UXE A;  2XPX A;  3MQP A;  4YK9 A;  4QVX A;  4OQ5 A;  2VOH A;  1MAZ A;  2O2M A;  1Q59 A;  3D7V A;  4ZII A;  2NLA A;  1YSI A;  2B48 A;  2O42 A;  2LR1 A;  2ROC A;  4LQK A;  2K7W A;  4BBC A;  3CVA X; 
#chains in the Genus database with same CATH homology
 4ZBI A;  2O2F A;  4BPJ A;  5KU9 A;  3WIY A;  1PQ1 A;  2M5B A;  1G5J A;  1LXL A;  1F16 A;  1YSG A;  3IIH A;  4G35 A;  1BXL A;  1G5M A;  4ZEQ A;  2WH6 A;  4BDU A;  4S0P A;  3ILC A;  3BL2 A;  1TY4 A;  4U2U A;  2VOG A;  3IHC A;  4BD2 A;  2IMS A;  5IEZ A;  4MI8 A;  4HW4 A;  3QBR A;  3IO9 A;  1R2G A;  2PQK A;  3KJ1 A;  1YSN A;  2W3L A;  5FMI A;  2KUA A;  3IIG A;  1R2D A;  4BPI A;  2VOF A;  4QNQ A;  1OHU A;  4ZBF A;  2VM6 A;  5KTG A;  3WIX A;  4BD7 A;  4YJ4 A;  3PK1 A;  5FC4 A;  2XA0 A;  2JM6 B;  1R2E A;  2MHS A;  3KJ0 A;  2YV6 A;  1PQ0 A;  5FDO A;  1ZY3 A;  5C6H A;  2ABO A;  4HW2 A;  1AF3 A;  3KJ2 A;  4ZIH A;  4ZIE A;  1MK3 A;  1R2H A;  4S0O A;  4BD6 A;  4K5B C;  2O2N A;  2O22 A;  3DVU A;  2A5Y A;  4HW3 A;  1GJH A;  3IHD A;  4ZIF A;  5IF4 A;  1YSW A;  2KBW A;  2ROD A;  1K3K A;  3IHE A;  1R2I A;  2ME8 A;  4WMR A;  4ZIG A;  4OQ6 A;  2JCN A;  1O0L A;  5C3F A;  5FDR A;  4BD8 A;  1DDB A;  2VOI A;  3KZ0 A;  5JSB A;  2NL9 A;  2BID A;  2BZW A;  2MEJ A;  2O21 A;  2V6Q A;  4B4S A;  4OYD A;  3I1H A;  2IMT A;  4U2V A;  1WSX A;  3MK8 A;  2XPX A;  3MQP A;  4YK9 A;  4QVX A;  4OQ5 A;  2VOH A;  1MAZ A;  2O2M A;  1Q59 A;  3D7V A;  4ZII A;  2NLA A;  1YSI A;  2B48 A;  2LR1 A;  2ROC A;  2K7W A;  3CVA X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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