3IHOA

The c-terminal glycosylase domain of human mbd4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
KWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Methyl-CpG-binding domain protein 4
publication title The C-terminal glycosylase domain of human MBD4
rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 45
structure length 138
sequence length 138
ec nomenclature ec 3.2.2.-:
pdb deposition date 2009-07-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3ihoA00
2NOHA 1P7MA 3OH9A 1WEFA 5KN8A 1YQRA 1LWWA 1NKUA 2NOZA 1PU6A 4AI4A 4OFAA 2NOFA 3F10A 4YOQA 4AIAA 1EBMA 4EJZA 3D4VA 3N0UA 4E9EA 3IHOA 2I5WA 4DK9A 3CVSA 3CWSA 1MUDA 5CHZA 4YPRA 3I0XA 3KTUA 4E9GA 3OGDA 4E9HA 2NOIA 1WEGA 4EVVA 1HU0A 1WEIA 1N3CA 1KG3A 1NGNA 4B23A 4YPHA 2YG8A 1MPGA 1N39A 4EA5A 1XQPA 5DPKA 1PU7A 4AI5A 2NOLA 5AN4A 1LWYA 3FHGA 2XHIA 4B21A 2NOEA 1LMZA 4UNFA 1KO9A 4B22A 1YQKA 3FHFA 2OFIA 3OH6A 1KG6A 1MUNA 1KG2A 2H56A 4B24A 4OFHA 1KG7A 2ABKA 1KG5A 1RRQA 5KN9A 3FSPA 2OFKA 4EW4A 2JHNA 3CVTA 3KNTA 2NOBA 2YG9A 3G0QA 1ORNA 4EA4A 1FN7A 1PU8A 1LWVA 1P59A 1M3HA 1YQLA 4EJYA 2JHJA 1YQMA 3CWAA 3CWUA 4PIIA 4UOBA 1M3QA 1PVSA 3I0WA 1KG4A 1KEAA 3N5NX 4E9FA 1ORPA 1KQJA 3CWTA 3CW7A 1XQOA 1DIZA 4EW0A 1MUYA 2JG6A 3S6IA 1XG7A 1RRSA 4HSBA 1VRLA 3F0ZA 1N3AA 3IH7A 4OFEA
chains in the Genus database with same CATH superfamily
2NOHA 1P7MA 3OH9A 1WEFA 5KN8A 4BDZA 3S3NA 1NKUA 4NZGA 1YQRA 1LWWA 1PU6A 4AI4A 4OFAA 2NOFA 4E7HA 1U84A 3F10A 4YOQA 4AIAA 4E7IA 1EBMA 4EJZA 4BACA 3OS1A 3D4VA 3N0UA 4E9EA 5FRMA 3IHOA 2I5WA 4DK9A 3OY9A 3CVSA 3CWSA 1MUDA 3L2QA 5CHZA 4YPRA 3I0XA 3KTUA 3OYCA 3L2VA 3OYGA 4E9GA 3OYKA 3OYBA 3OGDA 4E9HA 2NOIA 4E7LA 1WEGA 3OYHA 4EVVA 1HU0A 1WEIA 1N3CA 3OYNA 3NNQA 3R2XC 3OYLA 1KG3A 1NGNA 4B23A 4YPHA 5FRNA 2YG8A 1MPGA 1N39A 4EA5A 1XQPA 4BE2A 5DPKA 3S3MA 2W04A 1PU7A 3L2UA 4AI5A 3LCNA 2V75A 2NOLA 3S3OA 5AN4A 1LWYA 3L2RA 3FHGA 2XHIA 4E7JA 4B21A 2NOEA 1LMZA 4UNFA 1KO9A 4B22A 1YQKA 3FHFA 2OFIA 3OH6A 1KG6A 1MUNA 1KG2A 2H56A 4B24A 4OFHA 1KG7A 2ABKA 3OYDA 2NOZA 1KG5A 4BE1A 1RRQA 5FROA 5KN9A 3FSPA 3OYFA 2OFKA 3OYAA 4EW4A 2JHNA 3L2WA 3CVTA 3KNTA 2NOBA 2YG9A 3G0QA 1ORNA 4EA4A 4BE0A 4IKFA 1FN7A 1PU8A 1LWVA 1P59A 1M3HA 4ZTJA 1YQLA 4EJYA 4E7KA 3VW4A 2JHJA 1YQMA 2W03A 3CWAA 3CWUA 4PIIA 4UOBA 4BDYA 1M3QA 3OYEA 1PVSA 3I0WA 3OYIA 1KG4A 3OYMA 1KEAA 3N5NX 4E9FA 1ORPA 1KQJA 3CWTA 3CW7A 3OYJA 1XQOA 2JPSA 1DIZA 4EW0A 3OS2A 4ZTFA 1MUYA 2JG6A 3S6IA 1XG7A 1RRSA 3OS0A 4HSBA 1VRLA 3F0ZA 1N3AA 3IH7A 4OFEA
chains in the Genus database with same CATH topology
2NOHA 1P7MA 3OH9A 1WEFA 5KN8A 1YQRA 1LWWA 1NKUA 2NOZA 1PU6A 4AI4A 4OFAA 2NOFA 3F10A 4YOQA 4AIAA 1EBMA 4EJZA 3D4VA 3N0UA 4E9EA 3IHOA 2I5WA 4DK9A 3CVSA 3CWSA 1MUDA 5CHZA 4YPRA 3I0XA 3KTUA 4E9GA 3OGDA 4E9HA 2NOIA 1WEGA 4EVVA 1HU0A 1WEIA 1N3CA 1KG3A 1NGNA 4B23A 4YPHA 2YG8A 1MPGA 1N39A 4EA5A 1XQPA 5DPKA 1PU7A 4AI5A 2NOLA 5AN4A 1LWYA 3FHGA 2XHIA 4B21A 2NOEA 1LMZA 4UNFA 1KO9A 4B22A 1YQKA 3FHFA 2OFIA 3OH6A 1KG6A 1MUNA 1KG2A 2H56A 4B24A 4OFHA 1KG7A 2ABKA 1KG5A 1RRQA 5KN9A 3FSPA 2OFKA 4EW4A 2JHNA 3CVTA 3KNTA 2NOBA 2YG9A 3G0QA 1ORNA 4EA4A 1FN7A 1PU8A 1LWVA 1P59A 1M3HA 1YQLA 4EJYA 2JHJA 1YQMA 3CWAA 3CWUA 4PIIA 4UOBA 1M3QA 1PVSA 3I0WA 1KG4A 1KEAA 3N5NX 4E9FA 1ORPA 1KQJA 3CWTA 3CW7A 1XQOA 1DIZA 4EW0A 1MUYA 2JG6A 3S6IA 1XG7A 1RRSA 4HSBA 1VRLA 3F0ZA 1N3AA 3IH7A 4OFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NOH A;  1P7M A;  3OH9 A;  1WEF A;  5KN8 A;  1YQR A;  1LWW A;  1NKU A;  2NOZ A;  1PU6 A;  4AI4 A;  4OFA A;  2NOF A;  3F10 A;  4YOQ A;  4AIA A;  1EBM A;  4EJZ A;  3D4V A;  3N0U A;  4E9E A;  3IHO A;  2I5W A;  4DK9 A;  3CVS A;  3CWS A;  1MUD A;  5CHZ A;  4YPR A;  3I0X A;  3KTU A;  4E9G A;  3OGD A;  4E9H A;  2NOI A;  1WEG A;  4EVV A;  1HU0 A;  1WEI A;  1N3C A;  1KG3 A;  1NGN A;  4B23 A;  4YPH A;  2YG8 A;  1MPG A;  1N39 A;  4EA5 A;  1XQP A;  5DPK A;  1PU7 A;  4AI5 A;  2NOL A;  5AN4 A;  1LWY A;  3FHG A;  2XHI A;  4B21 A;  2NOE A;  1LMZ A;  4UNF A;  1KO9 A;  4B22 A;  1YQK A;  3FHF A;  2OFI A;  3OH6 A;  1KG6 A;  1MUN A;  1KG2 A;  2H56 A;  4B24 A;  4OFH A;  1KG7 A;  2ABK A;  1KG5 A;  1RRQ A;  5KN9 A;  3FSP A;  2OFK A;  4EW4 A;  2JHN A;  3CVT A;  3KNT A;  2NOB A;  2YG9 A;  3G0Q A;  1ORN A;  4EA4 A;  1FN7 A;  1PU8 A;  1LWV A;  1P59 A;  1M3H A;  1YQL A;  4EJY A;  2JHJ A;  1YQM A;  3CWA A;  3CWU A;  4PII A;  4UOB A;  1M3Q A;  1PVS A;  3I0W A;  1KG4 A;  1KEA A;  3N5N X;  4E9F A;  1ORP A;  1KQJ A;  3CWT A;  3CW7 A;  1XQO A;  1DIZ A;  4EW0 A;  1MUY A;  2JG6 A;  3S6I A;  1XG7 A;  1RRS A;  4HSB A;  1VRL A;  3F0Z A;  1N3A A;  3IH7 A;  4OFE A; 
#chains in the Genus database with same CATH topology
 2NOH A;  1P7M A;  3OH9 A;  1WEF A;  5KN8 A;  4BDZ A;  3S3N A;  1NKU A;  4NZG A;  1YQR A;  1LWW A;  1PU6 A;  4AI4 A;  4OFA A;  2NOF A;  4E7H A;  1U84 A;  3F10 A;  4YOQ A;  4AIA A;  4E7I A;  1EBM A;  4EJZ A;  4BAC A;  3OS1 A;  3D4V A;  3N0U A;  4E9E A;  5FRM A;  3IHO A;  2I5W A;  4DK9 A;  3OY9 A;  3CVS A;  3CWS A;  1MUD A;  3L2Q A;  5CHZ A;  4YPR A;  3I0X A;  3KTU A;  3OYC A;  3L2V A;  3OYG A;  4E9G A;  3OYK A;  3OYB A;  3OGD A;  4E9H A;  2NOI A;  4E7L A;  1WEG A;  3OYH A;  4EVV A;  1HU0 A;  1WEI A;  1N3C A;  3OYN A;  3NNQ A;  3R2X C;  3OYL A;  1KG3 A;  1NGN A;  4B23 A;  4YPH A;  5FRN A;  2YG8 A;  1MPG A;  1N39 A;  4EA5 A;  1XQP A;  4BE2 A;  5DPK A;  3S3M A;  2W04 A;  1PU7 A;  3L2U A;  4AI5 A;  3LCN A;  2V75 A;  2NOL A;  3S3O A;  5AN4 A;  1LWY A;  3L2R A;  3FHG A;  2XHI A;  4E7J A;  4B21 A;  2NOE A;  1LMZ A;  4UNF A;  1KO9 A;  4B22 A;  1YQK A;  3FHF A;  2OFI A;  3OH6 A;  1KG6 A;  1MUN A;  1KG2 A;  2H56 A;  4B24 A;  4OFH A;  1KG7 A;  2ABK A;  3OYD A;  2NOZ A;  1KG5 A;  4BE1 A;  1RRQ A;  5FRO A;  5KN9 A;  3FSP A;  3OYF A;  2OFK A;  3OYA A;  4EW4 A;  2JHN A;  3L2W A;  3CVT A;  3KNT A;  2NOB A;  2YG9 A;  3G0Q A;  1ORN A;  4EA4 A;  4BE0 A;  4IKF A;  1FN7 A;  1PU8 A;  1LWV A;  1P59 A;  1M3H A;  4ZTJ A;  1YQL A;  4EJY A;  4E7K A;  3VW4 A;  2JHJ A;  1YQM A;  2W03 A;  3CWA A;  3CWU A;  4PII A;  4UOB A;  4BDY A;  1M3Q A;  3OYE A;  1PVS A;  3I0W A;  3OYI A;  1KG4 A;  3OYM A;  1KEA A;  3N5N X;  4E9F A;  1ORP A;  1KQJ A;  3CWT A;  3CW7 A;  3OYJ A;  1XQO A;  2JPS A;  1DIZ A;  4EW0 A;  3OS2 A;  4ZTF A;  1MUY A;  2JG6 A;  3S6I A;  1XG7 A;  1RRS A;  3OS0 A;  4HSB A;  1VRL A;  3F0Z A;  1N3A A;  3IH7 A;  4OFE A; 
#chains in the Genus database with same CATH homology
 2NOH A;  1P7M A;  3OH9 A;  1WEF A;  5KN8 A;  1YQR A;  1LWW A;  1NKU A;  2NOZ A;  1PU6 A;  4AI4 A;  4OFA A;  2NOF A;  3F10 A;  4YOQ A;  4AIA A;  1EBM A;  4EJZ A;  3D4V A;  3N0U A;  4E9E A;  3IHO A;  2I5W A;  4DK9 A;  3CVS A;  3CWS A;  1MUD A;  5CHZ A;  4YPR A;  3I0X A;  3KTU A;  4E9G A;  3OGD A;  4E9H A;  2NOI A;  1WEG A;  4EVV A;  1HU0 A;  1WEI A;  1N3C A;  1KG3 A;  1NGN A;  4B23 A;  4YPH A;  2YG8 A;  1MPG A;  1N39 A;  4EA5 A;  1XQP A;  5DPK A;  1PU7 A;  4AI5 A;  2NOL A;  5AN4 A;  1LWY A;  3FHG A;  2XHI A;  4B21 A;  2NOE A;  1LMZ A;  4UNF A;  1KO9 A;  4B22 A;  1YQK A;  3FHF A;  2OFI A;  3OH6 A;  1KG6 A;  1MUN A;  1KG2 A;  2H56 A;  4B24 A;  4OFH A;  1KG7 A;  2ABK A;  1KG5 A;  1RRQ A;  5KN9 A;  3FSP A;  2OFK A;  4EW4 A;  2JHN A;  3CVT A;  3KNT A;  2NOB A;  2YG9 A;  3G0Q A;  1ORN A;  4EA4 A;  1FN7 A;  1PU8 A;  1LWV A;  1P59 A;  1M3H A;  1YQL A;  4EJY A;  2JHJ A;  1YQM A;  3CWA A;  3CWU A;  4PII A;  4UOB A;  1M3Q A;  1PVS A;  3I0W A;  1KG4 A;  1KEA A;  3N5N X;  4E9F A;  1ORP A;  1KQJ A;  3CWT A;  3CW7 A;  1XQO A;  1DIZ A;  4EW0 A;  1MUY A;  2JG6 A;  3S6I A;  1XG7 A;  1RRS A;  4HSB A;  1VRL A;  3F0Z A;  1N3A A;  3IH7 A;  4OFE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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