3IIDA

Crystal structure of the macro domain of human histone macroh2a1.1 in complex with adp-ribose (form a)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
185
structure length
185
Chain Sequence
ADGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords Core histone macro-H2A.1, Isoform 1
publication title A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.
pubmed doi rcsb
source organism Homo sapiens
total genus 62
structure length 185
sequence length 185
ec nomenclature
pdb deposition date 2009-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3iidA00
1YD9A 4J4ZA 2VRIA 5FSXA 3SIGA 4ESSA 4K0CA 3PEIA 4R6TA 4GVVA 2X47A 4JVVA 3T8WA 2EWBA 3KR5A 4J5RA 1BPNA 3EWQA 3KQXA 4X2TA 3GQOA 4KYBA 4R76A 2FG1A 3EJGA 3EKEA 1VHUA 4JCAA 3H8FA 5D8NA 3KZWA 5FSYA 4ZX9A 4ZX8A 1BLLE 4ZY2A 5E3BA 5HIHA 3H8EA 4R7MA 4D86A 2LGRA 3EJFA 2J9AA 2XD7A 1TY8A 3VFQA 4J5SA 4ABLA 4K3NA 3JZTA 4ETKA 4ZI6A 3H8GA 3GPGA 5CBMA 5AILA 4ETJA 3GQEA 2FAVA 3IIFA 3KQZA 2AFCA 2DX6A 2EEEA 4UMLA 4KSIA 1ZR3A 1LAMA 4JGKA 3SIJA 4ABKA 5CB3A 2L8RA 3Q71A 3EWPA 3IJ3A 5HOLA 4ZY1A 2ACFA 3ETIA 4TU0A 2BFRA 5FSUA 3EW5A 1LANA 3GPQA 3V45A 3IIDA 4J5QA 5CB5A 1LAPA 3GPOA 3EWOA 3KR4A 1ZR5A 4ZY0A 1BPMA 1LCPA 4GVWA 4GUAA 4IQYA 1TXZA 2BFQA 1HJZA 4JLLA 3SIHA 2FXKA 1SPVA 3SIIA 5DUSA 1GYTA 5FSVA 3EWRA 4ZYQA 3JRUA 5FSZA 1NJRA 3V2BA 3Q6ZA 5CMSA
chains in the Genus database with same CATH superfamily
1YD9A 4J4ZA 2VRIA 5FSXA 3SIGA 4ESSA 4K0CA 3PEIA 4R6TA 4GVVA 2X47A 4JVVA 3T8WA 2EWBA 3KR5A 4J5RA 1BPNA 3EWQA 3KQXA 4X2TA 3GQOA 4KYBA 4R76A 2FG1A 3EJGA 3EKEA 1VHUA 4JCAA 3H8FA 5D8NA 3KZWA 5FSYA 4ZX9A 4ZX8A 1BLLE 4ZY2A 2JZFA 5E3BA 5HIHA 3H8EA 4R7MA 4D86A 2LGRA 3EJFA 2J9AA 2XD7A 1TY8A 3VFQA 4J5SA 4ABLA 4K3NA 2KQVA 2JZEA 3JZTA 4ETKA 4ZI6A 3H8GA 3GPGA 5CBMA 5AILA 4ETJA 3GQEA 2FAVA 3IIFA 3KQZA 2AFCA 2DX6A 2EEEA 4UMLA 4KSIA 1ZR3A 1LAMA 4JGKA 3SIJA 4ABKA 5CB3A 2L8RA 3Q71A 3EWPA 3IJ3A 5HOLA 4ZY1A 2ACFA 2JZDA 3ETIA 4TU0A 2BFRA 5FSUA 3EW5A 1LANA 3GPQA 3V45A 3IIDA 4J5QA 5CB5A 1LAPA 2RNKA 3GPOA 3EWOA 3KR4A 1ZR5A 4ZY0A 1BPMA 1LCPA 4GVWA 4GUAA 4IQYA 1TXZA 2BFQA 1HJZA 4JLLA 3SIHA 2FXKA 1SPVA 3SIIA 2WCTA 5DUSA 1GYTA 5FSVA 3EWRA 4ZYQA 3JRUA 2W2GA 5FSZA 1NJRA 3V2BA 3Q6ZA 5CMSA
chains in the Genus database with same CATH topology
1YD9A 4J4ZA 2VRIA 5FSXA 3SIGA 4ESSA 4K0CA 3PEIA 4R6TA 4GVVA 2X47A 4JVVA 3T8WA 2EWBA 3KR5A 4J5RA 1BPNA 3EWQA 3KQXA 4X2TA 3GQOA 4KYBA 4R76A 2FG1A 3EJGA 3EKEA 1VHUA 4JCAA 3H8FA 5D8NA 3KZWA 5FSYA 4ZX9A 4ZX8A 1BLLE 4ZY2A 5E3BA 5HIHA 3H8EA 4R7MA 4D86A 2LGRA 3EJFA 2J9AA 2XD7A 1TY8A 3VFQA 4J5SA 4ABLA 4K3NA 3JZTA 4ETKA 4ZI6A 3H8GA 3GPGA 5CBMA 5AILA 4ETJA 3GQEA 2FAVA 3IIFA 3KQZA 2AFCA 2DX6A 2EEEA 4UMLA 4KSIA 1ZR3A 1LAMA 4JGKA 3SIJA 4ABKA 5CB3A 2L8RA 3Q71A 3EWPA 3IJ3A 5HOLA 4ZY1A 2ACFA 3ETIA 4TU0A 2BFRA 5FSUA 3EW5A 1LANA 3GPQA 3V45A 3IIDA 4J5QA 5CB5A 1LAPA 3GPOA 3EWOA 3KR4A 1ZR5A 4ZY0A 1BPMA 1LCPA 4GVWA 4GUAA 4IQYA 1TXZA 2BFQA 1HJZA 4JLLA 3SIHA 2FXKA 1SPVA 3SIIA 5DUSA 1GYTA 5FSVA 3EWRA 4ZYQA 3JRUA 5FSZA 1NJRA 3V2BA 3Q6ZA 5CMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YD9 A;  4J4Z A;  2VRI A;  5FSX A;  3SIG A;  4ESS A;  4K0C A;  3PEI A;  4R6T A;  4GVV A;  2X47 A;  4JVV A;  3T8W A;  2EWB A;  3KR5 A;  4J5R A;  1BPN A;  3EWQ A;  3KQX A;  4X2T A;  3GQO A;  4KYB A;  4R76 A;  2FG1 A;  3EJG A;  3EKE A;  1VHU A;  4JCA A;  3H8F A;  5D8N A;  3KZW A;  5FSY A;  4ZX9 A;  4ZX8 A;  1BLL E;  4ZY2 A;  5E3B A;  5HIH A;  3H8E A;  4R7M A;  4D86 A;  2LGR A;  3EJF A;  2J9A A;  2XD7 A;  1TY8 A;  3VFQ A;  4J5S A;  4ABL A;  4K3N A;  3JZT A;  4ETK A;  4ZI6 A;  3H8G A;  3GPG A;  5CBM A;  5AIL A;  4ETJ A;  3GQE A;  2FAV A;  3IIF A;  3KQZ A;  2AFC A;  2DX6 A;  2EEE A;  4UML A;  4KSI A;  1ZR3 A;  1LAM A;  4JGK A;  3SIJ A;  4ABK A;  5CB3 A;  2L8R A;  3Q71 A;  3EWP A;  3IJ3 A;  5HOL A;  4ZY1 A;  2ACF A;  3ETI A;  4TU0 A;  2BFR A;  5FSU A;  3EW5 A;  1LAN A;  3GPQ A;  3V45 A;  3IID A;  4J5Q A;  5CB5 A;  1LAP A;  3GPO A;  3EWO A;  3KR4 A;  1ZR5 A;  4ZY0 A;  1BPM A;  1LCP A;  4GVW A;  4GUA A;  4IQY A;  1TXZ A;  2BFQ A;  1HJZ A;  4JLL A;  3SIH A;  2FXK A;  1SPV A;  3SII A;  5DUS A;  1GYT A;  5FSV A;  3EWR A;  4ZYQ A;  3JRU A;  5FSZ A;  1NJR A;  3V2B A;  3Q6Z A;  5CMS A; 
#chains in the Genus database with same CATH topology
 1YD9 A;  4J4Z A;  2VRI A;  5FSX A;  3SIG A;  4ESS A;  4K0C A;  3PEI A;  4R6T A;  4GVV A;  2X47 A;  4JVV A;  3T8W A;  2EWB A;  3KR5 A;  4J5R A;  1BPN A;  3EWQ A;  3KQX A;  4X2T A;  3GQO A;  4KYB A;  4R76 A;  2FG1 A;  3EJG A;  3EKE A;  1VHU A;  4JCA A;  3H8F A;  5D8N A;  3KZW A;  5FSY A;  4ZX9 A;  4ZX8 A;  1BLL E;  4ZY2 A;  2JZF A;  5E3B A;  5HIH A;  3H8E A;  4R7M A;  4D86 A;  2LGR A;  3EJF A;  2J9A A;  2XD7 A;  1TY8 A;  3VFQ A;  4J5S A;  4ABL A;  4K3N A;  2KQV A;  2JZE A;  3JZT A;  4ETK A;  4ZI6 A;  3H8G A;  3GPG A;  5CBM A;  5AIL A;  4ETJ A;  3GQE A;  2FAV A;  3IIF A;  3KQZ A;  2AFC A;  2DX6 A;  2EEE A;  4UML A;  4KSI A;  1ZR3 A;  1LAM A;  4JGK A;  3SIJ A;  4ABK A;  5CB3 A;  2L8R A;  3Q71 A;  3EWP A;  3IJ3 A;  5HOL A;  4ZY1 A;  2ACF A;  2JZD A;  3ETI A;  4TU0 A;  2BFR A;  5FSU A;  3EW5 A;  1LAN A;  3GPQ A;  3V45 A;  3IID A;  4J5Q A;  5CB5 A;  1LAP A;  2RNK A;  3GPO A;  3EWO A;  3KR4 A;  1ZR5 A;  4ZY0 A;  1BPM A;  1LCP A;  4GVW A;  4GUA A;  4IQY A;  1TXZ A;  2BFQ A;  1HJZ A;  4JLL A;  3SIH A;  2FXK A;  1SPV A;  3SII A;  2WCT A;  5DUS A;  1GYT A;  5FSV A;  3EWR A;  4ZYQ A;  3JRU A;  2W2G A;  5FSZ A;  1NJR A;  3V2B A;  3Q6Z A;  5CMS A; 
#chains in the Genus database with same CATH homology
 1YD9 A;  4J4Z A;  2VRI A;  5FSX A;  3SIG A;  4ESS A;  4K0C A;  3PEI A;  4R6T A;  4GVV A;  2X47 A;  4JVV A;  3T8W A;  2EWB A;  3KR5 A;  4J5R A;  1BPN A;  3EWQ A;  3KQX A;  4X2T A;  3GQO A;  4KYB A;  4R76 A;  2FG1 A;  3EJG A;  3EKE A;  1VHU A;  4JCA A;  3H8F A;  5D8N A;  3KZW A;  5FSY A;  4ZX9 A;  4ZX8 A;  1BLL E;  4ZY2 A;  5E3B A;  5HIH A;  3H8E A;  4R7M A;  4D86 A;  2LGR A;  3EJF A;  2J9A A;  2XD7 A;  1TY8 A;  3VFQ A;  4J5S A;  4ABL A;  4K3N A;  3JZT A;  4ETK A;  4ZI6 A;  3H8G A;  3GPG A;  5CBM A;  5AIL A;  4ETJ A;  3GQE A;  2FAV A;  3IIF A;  3KQZ A;  2AFC A;  2DX6 A;  2EEE A;  4UML A;  4KSI A;  1ZR3 A;  1LAM A;  4JGK A;  3SIJ A;  4ABK A;  5CB3 A;  2L8R A;  3Q71 A;  3EWP A;  3IJ3 A;  5HOL A;  4ZY1 A;  2ACF A;  3ETI A;  4TU0 A;  2BFR A;  5FSU A;  3EW5 A;  1LAN A;  3GPQ A;  3V45 A;  3IID A;  4J5Q A;  5CB5 A;  1LAP A;  3GPO A;  3EWO A;  3KR4 A;  1ZR5 A;  4ZY0 A;  1BPM A;  1LCP A;  4GVW A;  4GUA A;  4IQY A;  1TXZ A;  2BFQ A;  1HJZ A;  4JLL A;  3SIH A;  2FXK A;  1SPV A;  3SII A;  5DUS A;  1GYT A;  5FSV A;  3EWR A;  4ZYQ A;  3JRU A;  5FSZ A;  1NJR A;  3V2B A;  3Q6Z A;  5CMS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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