3IIQA

Crystallographic analysis of bacterial signal peptidase in ternary complex with arylomycin a2 and a beta-sultam inhibitor
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
245
structure length
217
Chain Sequence
FIYEPFQIPSGSMMPTLLIGDFILVEKFHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSACENALPVTYSNVEPSDFVQTFSSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic Analysis of Bacterial Signal Peptidase in Ternary Complex with Arylomycin A2 and a Beta-Sultam Inhibitor.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase/antibiotic/inhibitor
molecule keywords SIGNAL PEPTIDASE I
total genus 51
structure length 217
sequence length 245
chains with identical sequence B
ec nomenclature ec 3.4.21.89: Signal peptidase I.
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00717 Peptidase_S24 Peptidase S24-like
A PF10502 Peptidase_S26 Signal peptidase, peptidase S26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.109.10 Mainly Beta Ribbon Umud Fragment, subunit A Umud Fragment, subunit A 3iiqA01
2.170.230.10 Mainly Beta Beta Complex Signal Peptidase I; Chain: A, domain 2 Signal Peptidase I; Chain: A, domain 2 3iiqA02
1JHHA 3JSOA 2HNFA 2FJRA 2FKDA 3JSPA 1KCAA 1JHCA 1JHFA 1T7DA 1I4VA 1JHEA 3S04A 4ME8A 2HO0A 4N31A 4NV4A 3IIQA 1KN9A 3BDNA 4K8WA 1B12A 1AY9A 1F39A 3K2ZA 1UMUA
chains in the Genus database with same CATH superfamily
1JHHA 3JSOA 2HNFA 2FJRA 2FKDA 3JSPA 1KCAA 1JHCA 1JHFA 1T7DA 1I4VA 1JHEA 3S04A 4ME8A 2HO0A 4N31A 4NV4A 3IIQA 1KN9A 3BDNA 4K8WA 1B12A 1AY9A 1F39A 3K2ZA 1UMUA
chains in the Genus database with same CATH topology
1JHHA 3JSOA 2HNFA 2FJRA 2FKDA 3JSPA 1KCAA 1JHCA 1JHFA 1T7DA 1I4VA 1JHEA 3S04A 4ME8A 2HO0A 4N31A 4NV4A 3IIQA 1KN9A 3BDNA 4K8WA 1B12A 1AY9A 1F39A 3K2ZA 1UMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JHH A;  3JSO A;  2HNF A;  2FJR A;  2FKD A;  3JSP A;  1KCA A;  1JHC A;  1JHF A;  1T7D A;  1I4V A;  1JHE A;  3S04 A;  4ME8 A;  2HO0 A;  4N31 A;  4NV4 A;  3IIQ A;  1KN9 A;  3BDN A;  4K8W A;  1B12 A;  1AY9 A;  1F39 A;  3K2Z A;  1UMU A; 
#chains in the Genus database with same CATH topology
 1JHH A;  3JSO A;  2HNF A;  2FJR A;  2FKD A;  3JSP A;  1KCA A;  1JHC A;  1JHF A;  1T7D A;  1I4V A;  1JHE A;  3S04 A;  4ME8 A;  2HO0 A;  4N31 A;  4NV4 A;  3IIQ A;  1KN9 A;  3BDN A;  4K8W A;  1B12 A;  1AY9 A;  1F39 A;  3K2Z A;  1UMU A; 
#chains in the Genus database with same CATH homology
 1JHH A;  3JSO A;  2HNF A;  2FJR A;  2FKD A;  3JSP A;  1KCA A;  1JHC A;  1JHF A;  1T7D A;  1I4V A;  1JHE A;  3S04 A;  4ME8 A;  2HO0 A;  4N31 A;  4NV4 A;  3IIQ A;  1KN9 A;  3BDN A;  4K8W A;  1B12 A;  1AY9 A;  1F39 A;  3K2Z A;  1UMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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