3IJ2A

Ligand-receptor structure
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
110
structure length
110
Chain Sequence
HMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/protein binding
molecule keywords Beta-nerve growth factor
publication title Molecular and structural insight into proNGF engagement of p75NTR and sortilin.
pubmed doi rcsb
source organism Mus musculus
total genus 20
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3ij2A00
4EC7A 1FL7A 2VWEA 5E4GA 2V5EB 1AGQA 1MKGA 2VXSA 4EDXV 4MPLA 3HH2A 1QTYR 1ZKZA 2GYZA 3BMPA 2VPFA 1B8MB 1QFWA 4HR9A 1DZ7A 2QJAA 2XACA 4EFVA 4EAXA 1BETA 5HHDA 2FJGV 5F3HI 5JZ7A 3S1KV 2QR0C 1AOCA 2X1WA 5BQ8A 1QFWB 4GLSE 4QCIC 1HCFA 2QJBA 1KLCA 4YCIC 1TZHV 5BQCA 4HQXA 5BQ8B 1LXIA 4ZBNA 1TGKA 4UI0A 1LX5A 1BJ1V 2KD3A 3MJKA 3QB4A 2ASKA 4YCGC 4HQUA 1CZ8V 2FJHV 1S4YB 2GOOA 5F3BC 5HHXA 1HCNA 2XV7A 4UHZA 2P6AA 1WWWV 1PDGA 2H64A 1TFGA 2X1XE 4UI1A 1KTZA 5HI5A 1BMPA 1HCNB 1NYUB 2GYRA 5FV1V 4AY9A 2GNNA 2IFGE 1VPFA 3V2AA 1KATW 1WQ8A 1FZVA 1BNDA 4MIDA 4N1DA 5BQ8D 2QCWA 1KLAA 2R53A 4AY9B 5HK5E 3IJ2A 3S1BV 3JVFA 4ZFFC 3FUBB 2GH0C 1E9JA 1NT3A 1BNDB 2ARPA 4LXRJ 1REWA 1M4UA 1JPYA 2H62A 1SG1A 4X1JA 1RV6V 3QTKA 5FV2V 3RJRA 3KFDA 1HD4A 4FAOA 4QHUC 4UHYA 1TZIV 1HRPA 4BV4L 2B0UA 1MJVA 5BQEA 4GLNE 2PJYA 1SGFB 4XPJA 5HI3A 1HRPB 4KXZA 3SEKB 5HHCA 1WQ9A 5HK5A 5BQBA 1MKKA 1TGJA 3V6BA 5BQEB 5HI4A 4QAFC 2C7WA 1FLTV 1M4UL 4EDWV 1WAQA 1WQ9B 3EVSB 3MJGA 3BUKA 2BHKA 2QJ9A 1REUA 2TGIA 4WPBA 4LXSJ 1BTGA 1FL7B 4KZNA 3B4VA 4HSAA 1B8KA 3E07A 4UI2B 1XWDA 4MQWA 1B98A 3BK3A 3P9WA 5BPUA 1ES7A 3EO1C 2QCQA 1NYSB 1XWDB 2R52A 4MQWB 5AEJA 2ARVA 3BDYV 4KV5A 1B8MA 1VPPV 5HHVA
chains in the Genus database with same CATH superfamily
4EC7A 1FL7A 2VWEA 5E4GA 2V5EB 1AGQA 1MKGA 2VXSA 4EDXV 4MPLA 3HH2A 1QTYR 1ZKZA 2GYZA 3BMPA 2VPFA 1B8MB 1QFWA 4HR9A 1DZ7A 2QJAA 2XACA 4EFVA 4EAXA 1BETA 5HHDA 2FJGV 5F3HI 5JZ7A 3S1KV 2QR0C 1AOCA 2X1WA 5BQ8A 1QFWB 4GLSE 4QCIC 1HCFA 2QJBA 1KLCA 4YCIC 1TZHV 5BQCA 4HQXA 5BQ8B 1LXIA 4ZBNA 1TGKA 4UI0A 1LX5A 1BJ1V 2KD3A 3MJKA 3QB4A 2ASKA 4YCGC 4HQUA 1CZ8V 2FJHV 1S4YB 2GOOA 5F3BC 5HHXA 1HCNA 2XV7A 4UHZA 2P6AA 1WWWV 1PDGA 2H64A 1TFGA 2X1XE 4UI1A 1KTZA 5HI5A 1BMPA 1HCNB 1NYUB 2GYRA 5FV1V 4AY9A 2GNNA 2IFGE 1VPFA 3V2AA 1KATW 1WQ8A 1FZVA 1BNDA 4MIDA 4N1DA 5BQ8D 2QCWA 1KLAA 2R53A 4AY9B 5HK5E 3IJ2A 3S1BV 3JVFA 4ZFFC 3FUBB 2GH0C 1E9JA 1NT3A 1BNDB 2ARPA 4LXRJ 1REWA 1M4UA 1JPYA 2H62A 1SG1A 4X1JA 1RV6V 3QTKA 5FV2V 3RJRA 3KFDA 1HD4A 4FAOA 4QHUC 4UHYA 1TZIV 1HRPA 4BV4L 2B0UA 1MJVA 5BQEA 4GLNE 2PJYA 1SGFB 4XPJA 5HI3A 1HRPB 4KXZA 3SEKB 5HHCA 1WQ9A 5HK5A 5BQBA 1MKKA 1TGJA 3V6BA 5BQEB 5HI4A 4QAFC 2C7WA 1FLTV 1M4UL 4EDWV 1WAQA 1WQ9B 3EVSB 3MJGA 3BUKA 2BHKA 2QJ9A 1REUA 2TGIA 4WPBA 4LXSJ 1BTGA 1FL7B 4KZNA 3B4VA 4HSAA 1B8KA 3E07A 4UI2B 1XWDA 4MQWA 1B98A 3BK3A 3P9WA 5BPUA 1ES7A 3EO1C 2QCQA 1NYSB 1XWDB 2R52A 4MQWB 5AEJA 2ARVA 3BDYV 4KV5A 1B8MA 1VPPV 5HHVA
chains in the Genus database with same CATH topology
4EC7A 1FL7A 2VWEA 5E4GA 2V5EB 1AGQA 1MKGA 2VXSA 4EDXV 4MPLA 3HH2A 1QTYR 1ZKZA 2GYZA 3BMPA 2VPFA 1B8MB 1QFWA 4HR9A 1DZ7A 2QJAA 2XACA 4EFVA 4EAXA 1BETA 5HHDA 2FJGV 5F3HI 5JZ7A 3S1KV 2QR0C 1AOCA 2X1WA 5BQ8A 1QFWB 4GLSE 4QCIC 1HCFA 2QJBA 1KLCA 4YCIC 1TZHV 5BQCA 4HQXA 5BQ8B 1LXIA 4ZBNA 1TGKA 4UI0A 1LX5A 1BJ1V 2KD3A 3MJKA 3QB4A 2ASKA 4YCGC 4HQUA 1CZ8V 2FJHV 1S4YB 2GOOA 5F3BC 5HHXA 1HCNA 2XV7A 4UHZA 2P6AA 1WWWV 1PDGA 2H64A 1TFGA 2X1XE 4UI1A 1KTZA 5HI5A 1BMPA 1HCNB 1NYUB 2GYRA 5FV1V 4AY9A 2GNNA 2IFGE 1VPFA 3V2AA 1KATW 1WQ8A 1FZVA 1BNDA 4MIDA 4N1DA 5BQ8D 2QCWA 1KLAA 2R53A 4AY9B 5HK5E 3IJ2A 3S1BV 3JVFA 4ZFFC 3FUBB 2GH0C 1E9JA 1NT3A 1BNDB 2ARPA 4LXRJ 1REWA 1M4UA 1JPYA 2H62A 1SG1A 4X1JA 1RV6V 3QTKA 5FV2V 3RJRA 3KFDA 1HD4A 4FAOA 4QHUC 4UHYA 1TZIV 1HRPA 4BV4L 2B0UA 1MJVA 5BQEA 4GLNE 2PJYA 1SGFB 4XPJA 5HI3A 1HRPB 4KXZA 3SEKB 5HHCA 1WQ9A 5HK5A 5BQBA 1MKKA 1TGJA 3V6BA 5BQEB 5HI4A 4QAFC 2C7WA 1FLTV 1M4UL 4EDWV 1WAQA 1WQ9B 3EVSB 3MJGA 3BUKA 2BHKA 2QJ9A 1REUA 2TGIA 4WPBA 4LXSJ 1BTGA 1FL7B 4KZNA 3B4VA 4HSAA 1B8KA 3E07A 4UI2B 1XWDA 4MQWA 1B98A 3BK3A 3P9WA 5BPUA 1ES7A 3EO1C 2QCQA 1NYSB 1XWDB 2R52A 4MQWB 5AEJA 2ARVA 3BDYV 4KV5A 1B8MA 1VPPV 5HHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EC7 A;  1FL7 A;  2VWE A;  5E4G A;  2V5E B;  1AGQ A;  1MKG A;  2VXS A;  4EDX V;  4MPL A;  3HH2 A;  1QTY R;  1ZKZ A;  2GYZ A;  3BMP A;  2VPF A;  1B8M B;  1QFW A;  4HR9 A;  1DZ7 A;  2QJA A;  2XAC A;  4EFV A;  4EAX A;  1BET A;  5HHD A;  2FJG V;  5F3H I;  5JZ7 A;  3S1K V;  2QR0 C;  1AOC A;  2X1W A;  5BQ8 A;  1QFW B;  4GLS E;  4QCI C;  1HCF A;  2QJB A;  1KLC A;  4YCI C;  1TZH V;  5BQC A;  4HQX A;  5BQ8 B;  1LXI A;  4ZBN A;  1TGK A;  4UI0 A;  1LX5 A;  1BJ1 V;  2KD3 A;  3MJK A;  3QB4 A;  2ASK A;  4YCG C;  4HQU A;  1CZ8 V;  2FJH V;  1S4Y B;  2GOO A;  5F3B C;  5HHX A;  1HCN A;  2XV7 A;  4UHZ A;  2P6A A;  1WWW V;  1PDG A;  2H64 A;  1TFG A;  2X1X E;  4UI1 A;  1KTZ A;  5HI5 A;  1BMP A;  1HCN B;  1NYU B;  2GYR A;  5FV1 V;  4AY9 A;  2GNN A;  2IFG E;  1VPF A;  3V2A A;  1KAT W;  1WQ8 A;  1FZV A;  1BND A;  4MID A;  4N1D A;  5BQ8 D;  2QCW A;  1KLA A;  2R53 A;  4AY9 B;  5HK5 E;  3IJ2 A;  3S1B V;  3JVF A;  4ZFF C;  3FUB B;  2GH0 C;  1E9J A;  1NT3 A;  1BND B;  2ARP A;  4LXR J;  1REW A;  1M4U A;  1JPY A;  2H62 A;  1SG1 A;  4X1J A;  1RV6 V;  3QTK A;  5FV2 V;  3RJR A;  3KFD A;  1HD4 A;  4FAO A;  4QHU C;  4UHY A;  1TZI V;  1HRP A;  4BV4 L;  2B0U A;  1MJV A;  5BQE A;  4GLN E;  2PJY A;  1SGF B;  4XPJ A;  5HI3 A;  1HRP B;  4KXZ A;  3SEK B;  5HHC A;  1WQ9 A;  5HK5 A;  5BQB A;  1MKK A;  1TGJ A;  3V6B A;  5BQE B;  5HI4 A;  4QAF C;  2C7W A;  1FLT V;  1M4U L;  4EDW V;  1WAQ A;  1WQ9 B;  3EVS B;  3MJG A;  3BUK A;  2BHK A;  2QJ9 A;  1REU A;  2TGI A;  4WPB A;  4LXS J;  1BTG A;  1FL7 B;  4KZN A;  3B4V A;  4HSA A;  1B8K A;  3E07 A;  4UI2 B;  1XWD A;  4MQW A;  1B98 A;  3BK3 A;  3P9W A;  5BPU A;  1ES7 A;  3EO1 C;  2QCQ A;  1NYS B;  1XWD B;  2R52 A;  4MQW B;  5AEJ A;  2ARV A;  3BDY V;  4KV5 A;  1B8M A;  1VPP V;  5HHV A; 
#chains in the Genus database with same CATH topology
 4EC7 A;  1FL7 A;  2VWE A;  5E4G A;  2V5E B;  1AGQ A;  1MKG A;  2VXS A;  4EDX V;  4MPL A;  3HH2 A;  1QTY R;  1ZKZ A;  2GYZ A;  3BMP A;  2VPF A;  1B8M B;  1QFW A;  4HR9 A;  1DZ7 A;  2QJA A;  2XAC A;  4EFV A;  4EAX A;  1BET A;  5HHD A;  2FJG V;  5F3H I;  5JZ7 A;  3S1K V;  2QR0 C;  1AOC A;  2X1W A;  5BQ8 A;  1QFW B;  4GLS E;  4QCI C;  1HCF A;  2QJB A;  1KLC A;  4YCI C;  1TZH V;  5BQC A;  4HQX A;  5BQ8 B;  1LXI A;  4ZBN A;  1TGK A;  4UI0 A;  1LX5 A;  1BJ1 V;  2KD3 A;  3MJK A;  3QB4 A;  2ASK A;  4YCG C;  4HQU A;  1CZ8 V;  2FJH V;  1S4Y B;  2GOO A;  5F3B C;  5HHX A;  1HCN A;  2XV7 A;  4UHZ A;  2P6A A;  1WWW V;  1PDG A;  2H64 A;  1TFG A;  2X1X E;  4UI1 A;  1KTZ A;  5HI5 A;  1BMP A;  1HCN B;  1NYU B;  2GYR A;  5FV1 V;  4AY9 A;  2GNN A;  2IFG E;  1VPF A;  3V2A A;  1KAT W;  1WQ8 A;  1FZV A;  1BND A;  4MID A;  4N1D A;  5BQ8 D;  2QCW A;  1KLA A;  2R53 A;  4AY9 B;  5HK5 E;  3IJ2 A;  3S1B V;  3JVF A;  4ZFF C;  3FUB B;  2GH0 C;  1E9J A;  1NT3 A;  1BND B;  2ARP A;  4LXR J;  1REW A;  1M4U A;  1JPY A;  2H62 A;  1SG1 A;  4X1J A;  1RV6 V;  3QTK A;  5FV2 V;  3RJR A;  3KFD A;  1HD4 A;  4FAO A;  4QHU C;  4UHY A;  1TZI V;  1HRP A;  4BV4 L;  2B0U A;  1MJV A;  5BQE A;  4GLN E;  2PJY A;  1SGF B;  4XPJ A;  5HI3 A;  1HRP B;  4KXZ A;  3SEK B;  5HHC A;  1WQ9 A;  5HK5 A;  5BQB A;  1MKK A;  1TGJ A;  3V6B A;  5BQE B;  5HI4 A;  4QAF C;  2C7W A;  1FLT V;  1M4U L;  4EDW V;  1WAQ A;  1WQ9 B;  3EVS B;  3MJG A;  3BUK A;  2BHK A;  2QJ9 A;  1REU A;  2TGI A;  4WPB A;  4LXS J;  1BTG A;  1FL7 B;  4KZN A;  3B4V A;  4HSA A;  1B8K A;  3E07 A;  4UI2 B;  1XWD A;  4MQW A;  1B98 A;  3BK3 A;  3P9W A;  5BPU A;  1ES7 A;  3EO1 C;  2QCQ A;  1NYS B;  1XWD B;  2R52 A;  4MQW B;  5AEJ A;  2ARV A;  3BDY V;  4KV5 A;  1B8M A;  1VPP V;  5HHV A; 
#chains in the Genus database with same CATH homology
 4EC7 A;  1FL7 A;  2VWE A;  5E4G A;  2V5E B;  1AGQ A;  1MKG A;  2VXS A;  4EDX V;  4MPL A;  3HH2 A;  1QTY R;  1ZKZ A;  2GYZ A;  3BMP A;  2VPF A;  1B8M B;  1QFW A;  4HR9 A;  1DZ7 A;  2QJA A;  2XAC A;  4EFV A;  4EAX A;  1BET A;  5HHD A;  2FJG V;  5F3H I;  5JZ7 A;  3S1K V;  2QR0 C;  1AOC A;  2X1W A;  5BQ8 A;  1QFW B;  4GLS E;  4QCI C;  1HCF A;  2QJB A;  1KLC A;  4YCI C;  1TZH V;  5BQC A;  4HQX A;  5BQ8 B;  1LXI A;  4ZBN A;  1TGK A;  4UI0 A;  1LX5 A;  1BJ1 V;  2KD3 A;  3MJK A;  3QB4 A;  2ASK A;  4YCG C;  4HQU A;  1CZ8 V;  2FJH V;  1S4Y B;  2GOO A;  5F3B C;  5HHX A;  1HCN A;  2XV7 A;  4UHZ A;  2P6A A;  1WWW V;  1PDG A;  2H64 A;  1TFG A;  2X1X E;  4UI1 A;  1KTZ A;  5HI5 A;  1BMP A;  1HCN B;  1NYU B;  2GYR A;  5FV1 V;  4AY9 A;  2GNN A;  2IFG E;  1VPF A;  3V2A A;  1KAT W;  1WQ8 A;  1FZV A;  1BND A;  4MID A;  4N1D A;  5BQ8 D;  2QCW A;  1KLA A;  2R53 A;  4AY9 B;  5HK5 E;  3IJ2 A;  3S1B V;  3JVF A;  4ZFF C;  3FUB B;  2GH0 C;  1E9J A;  1NT3 A;  1BND B;  2ARP A;  4LXR J;  1REW A;  1M4U A;  1JPY A;  2H62 A;  1SG1 A;  4X1J A;  1RV6 V;  3QTK A;  5FV2 V;  3RJR A;  3KFD A;  1HD4 A;  4FAO A;  4QHU C;  4UHY A;  1TZI V;  1HRP A;  4BV4 L;  2B0U A;  1MJV A;  5BQE A;  4GLN E;  2PJY A;  1SGF B;  4XPJ A;  5HI3 A;  1HRP B;  4KXZ A;  3SEK B;  5HHC A;  1WQ9 A;  5HK5 A;  5BQB A;  1MKK A;  1TGJ A;  3V6B A;  5BQE B;  5HI4 A;  4QAF C;  2C7W A;  1FLT V;  1M4U L;  4EDW V;  1WAQ A;  1WQ9 B;  3EVS B;  3MJG A;  3BUK A;  2BHK A;  2QJ9 A;  1REU A;  2TGI A;  4WPB A;  4LXS J;  1BTG A;  1FL7 B;  4KZN A;  3B4V A;  4HSA A;  1B8K A;  3E07 A;  4UI2 B;  1XWD A;  4MQW A;  1B98 A;  3BK3 A;  3P9W A;  5BPU A;  1ES7 A;  3EO1 C;  2QCQ A;  1NYS B;  1XWD B;  2R52 A;  4MQW B;  5AEJ A;  2ARV A;  3BDY V;  4KV5 A;  1B8M A;  1VPP V;  5HHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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