3IKOC

Crystal structure of the heterotrimeric sec13-nup145c-nup84 nucleoporin complex
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
436
structure length
419
Chain Sequence
YQTERFTKFSDTLKEFKIEQDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLDEMELHPYNSRGLFEKKLMQDNKQLYQIWIVMVWLKENTYVMERPKNVPTSKWLNSITSGGLKSCDLDFPLRENTNVLDVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICMILCGIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQAGLDPYERAIYSYLSGAIPNQEVLQYSDWESDLHIHLNQILQTEIENYLLENNQVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLMASVILDSLPSVIHSSVEMLLDIIDKPYLLRIVTHLAICLDIINPGSVEEVDKSKLITTYISLLKLQGLYENIPIYATFLNESDCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein, protein transport
molecule keywords Protein transport protein SEC13
publication title Structure of a trimeric nucleoporin complex reveals alternate oligomerization states.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 145
structure length 419
sequence length 436
chains with identical sequence F, I
ec nomenclature
pdb deposition date 2009-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3450.20 Mainly Alpha Orthogonal Bundle Hyaluronidase domain-like Hyaluronidase domain-like 3ikoC02
3JROC 3IKOC
chains in the Genus database with same CATH superfamily
2GNXA 2IJQA 3IKOC 4P3FA 4P3GA 3JROC 5M73C 4P3EC
chains in the Genus database with same CATH topology
2GNXA 3IKOC 4P3FA 4P3GA 3JROC 5M73C 4P3EC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JRO C;  3IKO C; 
#chains in the Genus database with same CATH topology
 2GNX A;  2IJQ A;  3IKO C;  4P3F A;  4P3G A;  3JRO C;  5M73 C;  4P3E C; 
#chains in the Genus database with same CATH homology
 2GNX A;  3IKO C;  4P3F A;  4P3G A;  3JRO C;  5M73 C;  4P3E C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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