3IMQA

Crystal structure of the nusb101-s10(delta loop) complex
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
137
structure length
137
Chain Sequence
PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENSHKFVNGVLDKAAPVIRPNKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator / ribosomal protein
molecule keywords N utilization substance protein B
publication title Fine tuning of the E. coli NusB:NusE complex affinity to BoxA RNA is required for processive antitermination.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 54
structure length 137
sequence length 137
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 3imqA00
3D3BA 3D3CA 1TZWA 5LM7B 1TZVA 2JR0A 1TZXA 1EY1A 1SQGA 4EYAA 1SQFA 1TZUA 3R2CA 1EYVA 2YXLA 1TZTA 3R2DA 3IMQA 1Q8CA
chains in the Genus database with same CATH superfamily
3D3BA 3D3CA 1TZWA 5LM7B 1TZVA 2JR0A 1TZXA 1EY1A 1SQGA 4EYAA 1SQFA 1TZUA 3R2CA 1EYVA 2YXLA 1TZTA 3R2DA 3IMQA 1Q8CA
chains in the Genus database with same CATH topology
3D3BA 3D3CA 1TZWA 5LM7B 1TZVA 2JR0A 1TZXA 1EY1A 1SQGA 4EYAA 1SQFA 1TZUA 3R2CA 1EYVA 2YXLA 1TZTA 3R2DA 3IMQA 1Q8CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D3B A;  3D3C A;  1TZW A;  5LM7 B;  1TZV A;  2JR0 A;  1TZX A;  1EY1 A;  1SQG A;  4EYA A;  1SQF A;  1TZU A;  3R2C A;  1EYV A;  2YXL A;  1TZT A;  3R2D A;  3IMQ A;  1Q8C A; 
#chains in the Genus database with same CATH topology
 3D3B A;  3D3C A;  1TZW A;  5LM7 B;  1TZV A;  2JR0 A;  1TZX A;  1EY1 A;  1SQG A;  4EYA A;  1SQF A;  1TZU A;  3R2C A;  1EYV A;  2YXL A;  1TZT A;  3R2D A;  3IMQ A;  1Q8C A; 
#chains in the Genus database with same CATH homology
 3D3B A;  3D3C A;  1TZW A;  5LM7 B;  1TZV A;  2JR0 A;  1TZX A;  1EY1 A;  1SQG A;  4EYA A;  1SQF A;  1TZU A;  3R2C A;  1EYV A;  2YXL A;  1TZT A;  3R2D A;  3IMQ A;  1Q8C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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