3INBC

Structure of the measles virus hemagglutinin bound to the cd46 receptor
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
126
structure length
126
Chain Sequence
CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/immune system
molecule keywords Hemagglutinin glycoprotein
publication title Structure of the measles virus hemagglutinin bound to the CD46 receptor
pubmed doi rcsb
source organism Measles virus strain edmonston
total genus 14
structure length 126
sequence length 126
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3inbC02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3inbC01
4F4OC 1E5GA 2CG7A 2RLPA 3EJHA 1GPZA 4B2RA 5HYUB 4DJZA 1QO6A 1G4GA 4FXGG 2XRBA 1E88A 1OK3A 4A5WB 3CALA 1C1ZA 2B5ID 1VVDA 2RKYA 4LOTA 1U5MA 5I0QB 1OK1A 1E8BA 2V8EA 4MUCA 4K12A 4AYMA 3IX0A 1UOTP 4AYIA 3OEDC 3SW0X 2YBYA 2BZMA 1TPNA 1GHQB 2WIIC 2EHFA 2A55A 4ONTD 1GKGA 1OJYA 2LOJA 2QY0A 2CKUA 2O39C 4IGDA 2JGXA 4B2SA 3ZD2A 1FBRA 3ZRZA 1H2PP 4LOSA 2RLQA 2RL0A 1TPMA 4YNXA 3KZJA 2KRIA 2EC3A 4AYDA 3M7PA 1ELVA 1PPQA 1H2QP 1ZJKA 3TVJA 3L89M 1G4FA 1GKNA 5HZPB 1SS2A 1NWVA 2W81A 4AYEA 2UWNA 4CSYA 1CKLA 1O9AA 3INBC 1MD7A 1HFIA 2CG6A 1Q3XA 2YRAA 1QGBA 2XQWC 2MCYA 3OP8A 3GXEA 1OJVA 2XRDA 2MCZA 1OK2A 2W80A 1SRZA 3IU3I 3ERBA 2RKZA 5HYPA 3O8EB 1OK9A 4KKDA 3KXVA 1QUBA 1LY2A 2KMSA 4C16A 3GOVA 4J38B 3OXUD 3MQLA 1OJWA 5FO8C 4WJG2 2ERJA 5HYTB 1H03P 2JRAA 3T5OA 2XWJI 3ZD1A 2IZ3A 2XWBF 1TPGA 1VVCA 4ZH1D 3NFPI 1HFHA 2IZ4A 1Z92B 5JPMG 1HCCA 3RJ3D 2JGWA 4PZ5A 4JHSA 2G7IA 1H04P 1MD8A 3R62A
chains in the Genus database with same CATH superfamily
4F4OC 1E5GA 2CG7A 2RLPA 3EJHA 1GPZA 4B2RA 5HYUB 4DJZA 1QO6A 1G4GA 4FXGG 2XRBA 1E88A 1OK3A 4A5WB 3F6KA 3CALA 1C1ZA 2B5ID 1VVDA 2RKYA 4LOTA 1U5MA 5I0QB 1OK1A 1E8BA 2V8EA 4MUCA 4K12A 4AYMA 3IX0A 1UOTP 4AYIA 3OEDC 3SW0X 2YBYA 4N7EA 2BZMA 1RLHA 1TPNA 1GHQB 2WIIC 2EHFA 2A55A 2X2ZA 4ONTD 1OJYA 2LOJA 1GKGA 2QY0A 2CKUA 2O39C 4IGDA 2JGXA 4B2SA 3ZD2A 1FBRA 3ZRZA 4YIZA 1H2PP 4APLA 4PO7A 4LOSA 2RLQA 2RL0A 1TPMA 4YNXA 3KZJA 2KRIA 2EC3A 3FGTA 3M7PA 5DN4A 1ELVA 4AYDA 5DN5A 1PPQA 1H2QP 1ZJKA 3TVJA 3L89M 1G4FA 3VWOA 1GKNA 5HZPB 1SS2A 3ZLDA 1NWVA 2W81A 4AYEA 2UWNA 4CSYA 1CKLA 1O9AA 2Y8RA 2I2LA 3INBC 1MD7A 1HFIA 2CG6A 2Y8TA 1Q3XA 2YRAA 1QGBA 2XQWC 3CI0J 2MCYA 3OP8A 3GXEA 1OJVA 2Y8SA 2XRDA 3FGRA 2MCZA 4BWCA 1OK2A 2W80A 1SRZA 3IU3I 3ERBA 2RKZA 2ZYCA 5HYPA 3ZLEA 3O8EB 1OK9A 4KKDA 3KXVA 1QUBA 1LY2A 2KMSA 4C16A 3GOVA 4J38B 4MSLA 3OXUD 3NJAA 3MQLA 1OJWA 3K3TA 5FO8C 4WJG2 2ERJA 5HYTB 1H03P 2JRAA 3T5OA 2XWJI 3WSYA 3ZD1A 2IZ3A 2XWBF 1TPGA 1VVCA 4ZH1D 3NFPI 1HFHA 2IZ4A 1Z92B 5JPMG 1HCCA 3RJ3D 2JGWA 4PZ5A 3WSXA 4JHSA 2G7IA 1H04P 1MD8A 3R62A
chains in the Genus database with same CATH topology
4F4OC 1E5GA 2CG7A 2RLPA 3EJHA 1GPZA 4B2RA 5HYUB 4DJZA 1QO6A 1G4GA 4FXGG 2XRBA 1E88A 1OK3A 4A5WB 3CALA 1C1ZA 2B5ID 1VVDA 2RKYA 4LOTA 1U5MA 5I0QB 1OK1A 1E8BA 2V8EA 4MUCA 4K12A 4AYMA 3IX0A 1UOTP 4AYIA 3OEDC 3SW0X 2YBYA 2BZMA 1TPNA 1GHQB 2WIIC 2EHFA 2A55A 4ONTD 1GKGA 1OJYA 2LOJA 2QY0A 2CKUA 2O39C 4IGDA 2JGXA 4B2SA 3ZD2A 1FBRA 3ZRZA 1H2PP 4LOSA 2RLQA 2RL0A 1TPMA 4YNXA 3KZJA 2KRIA 2EC3A 4AYDA 3M7PA 1ELVA 1PPQA 1H2QP 1ZJKA 3TVJA 3L89M 1G4FA 1GKNA 5HZPB 1SS2A 1NWVA 2W81A 4AYEA 2UWNA 4CSYA 1CKLA 1O9AA 3INBC 1MD7A 1HFIA 2CG6A 1Q3XA 2YRAA 1QGBA 2XQWC 2MCYA 3OP8A 3GXEA 1OJVA 2XRDA 2MCZA 1OK2A 2W80A 1SRZA 3IU3I 3ERBA 2RKZA 5HYPA 3O8EB 1OK9A 4KKDA 3KXVA 1QUBA 1LY2A 2KMSA 4C16A 3GOVA 4J38B 3OXUD 3MQLA 1OJWA 5FO8C 4WJG2 2ERJA 5HYTB 1H03P 2JRAA 3T5OA 2XWJI 3ZD1A 2IZ3A 2XWBF 1TPGA 1VVCA 4ZH1D 3NFPI 1HFHA 2IZ4A 1Z92B 5JPMG 1HCCA 3RJ3D 2JGWA 4PZ5A 4JHSA 2G7IA 1H04P 1MD8A 3R62A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F4O C;  1E5G A;  2CG7 A;  2RLP A;  3EJH A;  1GPZ A;  4B2R A;  5HYU B;  4DJZ A;  1QO6 A;  1G4G A;  4FXG G;  2XRB A;  1E88 A;  1OK3 A;  4A5W B;  3CAL A;  1C1Z A;  2B5I D;  1VVD A;  2RKY A;  4LOT A;  1U5M A;  5I0Q B;  1OK1 A;  1E8B A;  2V8E A;  4MUC A;  4K12 A;  4AYM A;  3IX0 A;  1UOT P;  4AYI A;  3OED C;  3SW0 X;  2YBY A;  2BZM A;  1TPN A;  1GHQ B;  2WII C;  2EHF A;  2A55 A;  4ONT D;  1GKG A;  1OJY A;  2LOJ A;  2QY0 A;  2CKU A;  2O39 C;  4IGD A;  2JGX A;  4B2S A;  3ZD2 A;  1FBR A;  3ZRZ A;  1H2P P;  4LOS A;  2RLQ A;  2RL0 A;  1TPM A;  4YNX A;  3KZJ A;  2KRI A;  2EC3 A;  4AYD A;  3M7P A;  1ELV A;  1PPQ A;  1H2Q P;  1ZJK A;  3TVJ A;  3L89 M;  1G4F A;  1GKN A;  5HZP B;  1SS2 A;  1NWV A;  2W81 A;  4AYE A;  2UWN A;  4CSY A;  1CKL A;  1O9A A;  3INB C;  1MD7 A;  1HFI A;  2CG6 A;  1Q3X A;  2YRA A;  1QGB A;  2XQW C;  2MCY A;  3OP8 A;  3GXE A;  1OJV A;  2XRD A;  2MCZ A;  1OK2 A;  2W80 A;  1SRZ A;  3IU3 I;  3ERB A;  2RKZ A;  5HYP A;  3O8E B;  1OK9 A;  4KKD A;  3KXV A;  1QUB A;  1LY2 A;  2KMS A;  4C16 A;  3GOV A;  4J38 B;  3OXU D;  3MQL A;  1OJW A;  5FO8 C;  4WJG 2;  2ERJ A;  5HYT B;  1H03 P;  2JRA A;  3T5O A;  2XWJ I;  3ZD1 A;  2IZ3 A;  2XWB F;  1TPG A;  1VVC A;  4ZH1 D;  3NFP I;  1HFH A;  2IZ4 A;  1Z92 B;  5JPM G;  1HCC A;  3RJ3 D;  2JGW A;  4PZ5 A;  4JHS A;  2G7I A;  1H04 P;  1MD8 A;  3R62 A; 
#chains in the Genus database with same CATH topology
 4F4O C;  1E5G A;  2CG7 A;  2RLP A;  3EJH A;  1GPZ A;  4B2R A;  5HYU B;  4DJZ A;  1QO6 A;  1G4G A;  4FXG G;  2XRB A;  1E88 A;  1OK3 A;  4A5W B;  3F6K A;  3CAL A;  1C1Z A;  2B5I D;  1VVD A;  2RKY A;  4LOT A;  1U5M A;  5I0Q B;  1OK1 A;  1E8B A;  2V8E A;  4MUC A;  4K12 A;  4AYM A;  3IX0 A;  1UOT P;  4AYI A;  3OED C;  3SW0 X;  2YBY A;  4N7E A;  2BZM A;  1RLH A;  1TPN A;  1GHQ B;  2WII C;  2EHF A;  2A55 A;  2X2Z A;  4ONT D;  1OJY A;  2LOJ A;  1GKG A;  2QY0 A;  2CKU A;  2O39 C;  4IGD A;  2JGX A;  4B2S A;  3ZD2 A;  1FBR A;  3ZRZ A;  4YIZ A;  1H2P P;  4APL A;  4PO7 A;  4LOS A;  2RLQ A;  2RL0 A;  1TPM A;  4YNX A;  3KZJ A;  2KRI A;  2EC3 A;  3FGT A;  3M7P A;  5DN4 A;  1ELV A;  4AYD A;  5DN5 A;  1PPQ A;  1H2Q P;  1ZJK A;  3TVJ A;  3L89 M;  1G4F A;  3VWO A;  1GKN A;  5HZP B;  1SS2 A;  3ZLD A;  1NWV A;  2W81 A;  4AYE A;  2UWN A;  4CSY A;  1CKL A;  1O9A A;  2Y8R A;  2I2L A;  3INB C;  1MD7 A;  1HFI A;  2CG6 A;  2Y8T A;  1Q3X A;  2YRA A;  1QGB A;  2XQW C;  3CI0 J;  2MCY A;  3OP8 A;  3GXE A;  1OJV A;  2Y8S A;  2XRD A;  3FGR A;  2MCZ A;  4BWC A;  1OK2 A;  2W80 A;  1SRZ A;  3IU3 I;  3ERB A;  2RKZ A;  2ZYC A;  5HYP A;  3ZLE A;  3O8E B;  1OK9 A;  4KKD A;  3KXV A;  1QUB A;  1LY2 A;  2KMS A;  4C16 A;  3GOV A;  4J38 B;  4MSL A;  3OXU D;  3NJA A;  3MQL A;  1OJW A;  3K3T A;  5FO8 C;  4WJG 2;  2ERJ A;  5HYT B;  1H03 P;  2JRA A;  3T5O A;  2XWJ I;  3WSY A;  3ZD1 A;  2IZ3 A;  2XWB F;  1TPG A;  1VVC A;  4ZH1 D;  3NFP I;  1HFH A;  2IZ4 A;  1Z92 B;  5JPM G;  1HCC A;  3RJ3 D;  2JGW A;  4PZ5 A;  3WSX A;  4JHS A;  2G7I A;  1H04 P;  1MD8 A;  3R62 A; 
#chains in the Genus database with same CATH homology
 4F4O C;  1E5G A;  2CG7 A;  2RLP A;  3EJH A;  1GPZ A;  4B2R A;  5HYU B;  4DJZ A;  1QO6 A;  1G4G A;  4FXG G;  2XRB A;  1E88 A;  1OK3 A;  4A5W B;  3CAL A;  1C1Z A;  2B5I D;  1VVD A;  2RKY A;  4LOT A;  1U5M A;  5I0Q B;  1OK1 A;  1E8B A;  2V8E A;  4MUC A;  4K12 A;  4AYM A;  3IX0 A;  1UOT P;  4AYI A;  3OED C;  3SW0 X;  2YBY A;  2BZM A;  1TPN A;  1GHQ B;  2WII C;  2EHF A;  2A55 A;  4ONT D;  1GKG A;  1OJY A;  2LOJ A;  2QY0 A;  2CKU A;  2O39 C;  4IGD A;  2JGX A;  4B2S A;  3ZD2 A;  1FBR A;  3ZRZ A;  1H2P P;  4LOS A;  2RLQ A;  2RL0 A;  1TPM A;  4YNX A;  3KZJ A;  2KRI A;  2EC3 A;  4AYD A;  3M7P A;  1ELV A;  1PPQ A;  1H2Q P;  1ZJK A;  3TVJ A;  3L89 M;  1G4F A;  1GKN A;  5HZP B;  1SS2 A;  1NWV A;  2W81 A;  4AYE A;  2UWN A;  4CSY A;  1CKL A;  1O9A A;  3INB C;  1MD7 A;  1HFI A;  2CG6 A;  1Q3X A;  2YRA A;  1QGB A;  2XQW C;  2MCY A;  3OP8 A;  3GXE A;  1OJV A;  2XRD A;  2MCZ A;  1OK2 A;  2W80 A;  1SRZ A;  3IU3 I;  3ERB A;  2RKZ A;  5HYP A;  3O8E B;  1OK9 A;  4KKD A;  3KXV A;  1QUB A;  1LY2 A;  2KMS A;  4C16 A;  3GOV A;  4J38 B;  3OXU D;  3MQL A;  1OJW A;  5FO8 C;  4WJG 2;  2ERJ A;  5HYT B;  1H03 P;  2JRA A;  3T5O A;  2XWJ I;  3ZD1 A;  2IZ3 A;  2XWB F;  1TPG A;  1VVC A;  4ZH1 D;  3NFP I;  1HFH A;  2IZ4 A;  1Z92 B;  5JPM G;  1HCC A;  3RJ3 D;  2JGW A;  4PZ5 A;  4JHS A;  2G7I A;  1H04 P;  1MD8 A;  3R62 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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