The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
95
|
structure length |
95
|
Chain Sequence |
SNANKYNKIANELIKIIGEDNIISITHCATRLRVMVKDREIINDKKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDEL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of one domain of the PTS system, IIabc component from Clostridium difficile
rcsb |
| molecule keywords |
PTS system, IIabc component
|
| molecule tags |
Transferase
|
| source organism |
Clostridium difficile
|
| total genus |
22
|
| structure length |
95
|
| sequence length |
95
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-08-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00367 | PTS_EIIB | phosphotransferase system, EIIB |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | Glucose permease domain IIB |
#chains in the Genus database with same CATH superfamily 1IBA A; 3IPJ A; 3BP3 A; 1O2F B; 3BP8 C; #chains in the Genus database with same CATH topology 1WQG A; 3GTM K; 4C3I K; 4GTB A; 1WIH A; 2NVX C; 2JA5 C; 5C44 K; 3H3V L; 3A8I A; 4BBS C; 2KWA A; 5EGH A; 1Y1W C; 5M3F K; 3HOZ K; 4BY7 C; 4Y52 K; 3GTJ C; 4X6A K; 1F93 A; 5M5X K; 4KAR A; 4LOW A; 2V6T A; 1K83 K; 1JQW A; 4QIW L; 4A93 K; 2R93 K; 4KN4 A; 1RU0 A; 4A3F C; 1J6X A; 2PPB A; 2R92 K; 4A3D K; 1XZP A; 3S1N K; 4A3E K; 5IYB K; 3CQZ C; 5IP9 C; 1B4B A; 2JH3 A; 3LAJ A; 2NVT C; 2JA6 A; 2E2I C; 4PAB A; 2PHC B; 5C3E C; 4OIN A; 1WQH A; 4OIP A; 1J6V A; 1XXA A; 4BBR K; 1UV7 A; 4GTA A; 4OIR A; 3M4O K; 5C4J K; 4G7Z A; 4BBS K; 2GAG C; 4KAW X; 4G0W A; 2A6E A; 3S2D C; 4C2M K; 1XPP A; 3GTP A; 3S17 K; 2PMZ D; 1USO A; 1TWA C; 3HOW K; 1JVI A; 3GTK C; 4KN7 A; 3GTG A; 3M3Y K; 3GTQ C; 1WQF A; 3ADA C; 1ZXO A; 2R93 A; 3TFH A; 1O26 A; 1YX2 A; 2P5M A; 3S0X A; 5IYD K; 5FLM C; 2JA7 K; 4BLA A; 3PO3 C; 3S1R K; 3GTO A; 2W7V A; 5C4X K; 3A8J A; 2CW0 A; 2P8T A; 2O5J A; 1PJ5 A; 3HOX C; 2Y0S D; 1VH2 A; 1AB4 A; 2JA6 C; 1YCL A; 2WB1 D; 5C3E K; 4MQ9 A; 2FQT A; 3H0G K; 4OIQ A; 4BXX C; 1F9N A; 2CFA A; 2NVY K; 1B4A A; 3S16 C; 2PA8 D; 3GSI A; 1R9T K; 4A3I C; 2E2H A; 2XCO A; 4GTD A; 5TMC A; 3FHZ A; 3S14 C; 4YFX A; 2R7Z K; 1WSR A; 1I3Q C; 5M3M K; 2RH6 A; 3GIR A; 3A8K A; 4WIL A; 2EBB A; 2XCQ A; 4A3C C; 1YNJ A; 2FQO A; 4A3G C; 3GTL C; 3PO2 K; 4QJV A; 4GTF A; 2YU9 K; 1O2A A; 1F7V A; 2A6H A; 5IOS A; 1IBA A; 3GTO C; 3HOV C; 4FM9 A; 4A3K C; 2GSN A; 4GTC A; 1WCM C; 1DCP A; 3S1M K; 1BS2 A; 2VUM A; 5JVO A; 3BUE A; 1TWC C; 2NVQ C; 3FOE A; 2B63 C; 3BP8 C; 3H0G A; 1I6H K; 1XZQ A; 4A3B C; 4C3J K; 4A3J K; 3HKZ D; 3I4N C; 4BY1 K; 2JA8 K; 4KC6 A; 4C45 A; 4FZB A; 4KB4 A; 1TWF C; 3OPF A; 4KM9 A; 1IL2 A; 1TWG C; 2GAH C; 1I50 A; 4GFQ A; 2A68 A; 5IYC C; 3S2H C; 4A3L C; 1EK8 A; 1ZBS A; 1TWH K; 3K7A C; 3ERE D; 1HQM A; 3GEI A; 1BGW A; 3L4K A; 2WB1 L; 4A3G K; 3GTL K; 1L0W A; 4KDD A; 1DCO A; 4LLG A; 3RZD K; 1Y1V C; 3GDZ A; 3GEH A; 2E2J C; 1SFO C; 1INN A; 1VLO A; 5TJ3 A; 3FKI A; 2NVX K; 3S1Q C; 2JA5 K; 3S15 C; 3GTM A; 3HOV K; 3HOU C; 3QX3 A; 4KMH A; 1O25 A; 1G51 A; 1Y1W K; 2B63 K; 4BY7 K; 2ZFZ A; 3EQL A; 3Q3Q A; 3GTJ K; 4P5A A; 4GTE A; 5EGE A; 2RGR A; 3VA7 A; 3I4N K; 1ISE A; 3RZO C; 1WOP A; 4Y7N C; 4A3F K; 1K83 A; 3T01 A; 1XZP B; 1F7U A; 1TWF K; 4A3M C; 2R92 A; 1O28 A; 5FJ8 K; 3H3V D; 3CQZ K; 5IP9 K; 5IOT A; 2NVT K; 4GZY A; 5CJ9 A; 3T00 A; 5L46 A; 1V5V A; 4G0V A; 2E2I K; 3G4C A; 1IS1 A; 1O27 A; 1USM A; 2XCR B; 4J3N A; 1SFO K; 4P9S A; 4QIW D; 1SMY A; 4KMU A; 3S15 K; 3FKI C; 1IQ0 A; 4C3J C; 5IP7 C; 2JA5 A; 3AQP A; 4KM8 A; 3JST A; 1J98 A; 5C44 C; 5HL8 A; 3S2D K; 1O2F B; 4PAA A; 4LK1 A; 1TWA K; 5IOQ A; 3GTP C; 4P5B A; 3GTK K; 3HOZ C; 1EQR A; 4Y52 C; 1WOO A; 3GTG C; 4MEX A; 3GTQ K; 3L4J A; 4X6A C; 3HXA A; 4LR2 A; 1GE9 A; 4AYB D; 4A3M K; 5FLM K; 2R93 C; 5E68 A; 2R92 C; 3PO3 K; 4A3D C; 2JA7 A; 1YNN A; 3SZZ A; 4XLP A; 4XSX A; 5IYB C; 3HOX K; 5M5Y K; 1IW7 A; 4LQY A; 3TTG A; 2JA6 K; 2E2I A; 2PMZ L; 2CFA B; 4YG2 A; 1VRQ C; 4BXX K; 1DCH A; 3S16 K; 2GSU A; 2NVY A; 2V6U A; 4MEY A; 1XXC A; 5IP7 K; 4BBR C; 4A3I K; 1R9T A; 3M4O C; 2E2H C; 4Q4Z A; 4RMF A; 3S14 K; 2Y3P A; 5C4J C; 1I3Q K; 2WAQ D; 3AQO A; 3GTP K; 2R7Z A; 4C2M C; 1TWA A; 1ZQ1 C; 3S17 C; 2GSO A; 4G7H A; 3GTK A; 3TFJ A; 2Y0S L; 3GTG K; 3HOW C; 2A69 A; 1O2B A; 4A3C K; 1JOE A; 4QJV B; 3GTQ A; 3M3Y C; 3V4G A; 3WOD A; 3GEE A; 3HOY C; 3TFI A; 2YU9 A; 4G7O A; 2PA8 L; 5IYD C; 3GTO K; 2JA7 C; 4WJ3 M; 1I6V A; 1ZVU A; 3FOF A; 4A3K K; 3S1R C; 4YFK A; 1EI6 A; 5C4X C; 1WCM K; 4ZH4 A; 1O24 A; 1WOS A; 4JK1 A; 3LPX A; 4M1X A; 3I4M C; 1PJ7 A; 1TWC K; 1PJ6 A; 2NVQ K; 2VUM C; 4WJ4 A; 1XZQ B; 4OIO A; 2D6F C; 1VJE A; 4KAS A; 4A3B K; 1WSV A; 2O5I A; 3H0G C; 1EFW A; 4C3H C; 4XLN A; 2NVY C; 5CHP A; 1X31 C; 4AYB L; 4KAT A; 4BLB A; 3NUH A; 1R9T C; 2E2H K; 4AH6 A; 1TWG K; 5IYC K; 3S2H K; 1HI9 A; 1I50 C; 4A3L K; 3FKI K; 3MML B; 3N0B A; 3K7A K; 1I3Q A; 2BE5 A; 1TWH A; 2R7Z C; 1KQ4 A; 5JFE A; 4GTL A; 2ZUF A; 4GT9 A; 4NOI A; 1DD5 A; 3GTL A; 1Y1V K; 3HOY K; 3T02 A; 2E2J K; 4G0U A; 3PO2 C; 3CAG A; 4DDQ A; 4Q5S A; 3HKZ L; 4XCH A; 2YU9 C; 3S1Q K; 2NVX A; 3HOU K; 4BKW A; 1VGX A; 1BJT A; 4C3I C; 3GTM C; 1C0A A; 3N0C A; 1J6W A; 5IOR A; 3AD9 C; 1EH1 A; 1WCM A; 3I4M K; 2WAQ L; 3DXJ A; 3OEP A; 2VUM K; 1XXB A; 3IPJ A; 1TWC A; 1Y1W A; 4KMA A; 4KB2 A; 3S1M C; 2B63 A; 1BDF A; 3GTJ A; 3AH5 A; 4LJZ A; 4C3H K; 1I6H C; 4A3J C; 3RZO K; 5M5W K; 4Y7N K; 4ILD A; 4YFN A; 1IE0 A; 4BY1 C; 2JA8 C; 1K83 C; 3G4A A; 4A93 C; 1TWF A; 2V6S A; 1TWG A; 5TMF A; 1I50 K; 3LAP A; 3N3Y A; 3S1N C; 3CQZ A; 4A3E C; 3AD7 C; 1TWH C; 5D4D A; 3ORE A; 1O29 A; 2ZUE A; 3BP3 A; 3AD8 C; 4KMD A; 1ZYR A; 1Y1V A; 4XSZ A; 4LK0 A; 1SFO A; 3RZD C; 4O2D A; 3SZY A; 1WOR A; #chains in the Genus database with same CATH homology 1IBA A; 3IPJ A; 3BP3 A; 1O2F B; 3BP8 C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
