3IPPA

Crystal structure of sulfur-free ynje
Total Genus 140
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
412
structure length
411
Chain Sequence
AELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNGPSGHELAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPSSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Putative thiosulfate sulfurtransferase ynjE
publication title Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 140
structure length 411
sequence length 412
chains with identical sequence B
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2009-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3ippA01
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3ippA03
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3ippA02
1E0CA 3AAYA 1T3KA 1GN0A 1GMXA 3NTAA 3HWIA 2J6PA 2UZQA 3HZUA 1HZMA 3MZZA 2JTQA 2A2KA 3G5JA 3P3AA 3FS5A 2FSXA 3HIXA 3O3WA 1YMDA 5LAMA 3NT6A 1WHBA 1YMLA 3ILMA 3ICSA 3UTNX 2HHGA 2GWFA 1BOIA 4WH9A 3IWHA 1YM9A 5HPAA 3K9RA 5HBOA 1WV9A 3ICTA 2EG4A 3OP3A 3F4AA 2MRMA 3FLHA 1OKGA 1YMKA 2VSWA 1H4MX 2MOIA 3NHVA 3R2UA 3D1PA 2K0ZA 2EG3A 3IPOA 5HBQA 2EG4B 2OUCA 5HBLA 1VEEA 2JTSA 2IFDA 3NTDA 2IFVA 1H4KX 3GK5A 1RHSA 1CWRA 2ORAA 4WH7A 1QB0A 1C25A 1ORBA 4JGTA 2KL3A 2WLRA 5HBPA 1CWTA 1RHDA 1CWSA 3IPPA 3AAXA 2JTRA 4OCGA 4F67A 1BOHA 3I3UA 2WLXA 5LAOA 3TG1B 1TQ1A 1YT8A 3I2VA 2MOLA 3FOJA 1URHA 3FNJA 1YS0A 2DCQA 1DP2A 1UARA 1QXNA 3TP9A 3OLHA 3ICRA 3TG3A
chains in the Genus database with same CATH superfamily
1E0CA 3AAYA 1T3KA 1GN0A 1GMXA 3NTAA 3HWIA 2J6PA 2UZQA 3HZUA 1HZMA 3MZZA 2JTQA 2A2KA 3G5JA 3P3AA 3FS5A 2FSXA 3HIXA 3O3WA 1YMDA 5LAMA 3NT6A 1WHBA 1YMLA 3ILMA 3ICSA 3UTNX 2HHGA 2GWFA 1BOIA 4WH9A 3IWHA 1YM9A 5HPAA 3K9RA 5HBOA 1WV9A 3ICTA 2EG4A 3OP3A 3F4AA 2MRMA 3FLHA 1OKGA 1YMKA 2VSWA 1H4MX 2MOIA 3NHVA 3R2UA 3D1PA 2K0ZA 2EG3A 3IPOA 5HBQA 2EG4B 2OUCA 2Q82A 5HBLA 1VEEA 2JTSA 2IFDA 3NTDA 2IFVA 1H4KX 3GK5A 1RHSA 1CWRA 2ORAA 4WH7A 1QB0A 1C25A 1ORBA 4JGTA 2KL3A 2WLRA 5HBPA 1CWTA 1RHDA 1CWSA 3IPPA 3AAXA 2JTRA 4OCGA 4F67A 1BOHA 3I3UA 2WLXA 5LAOA 3TG1B 1TQ1A 1YT8A 3I2VA 2MOLA 3FOJA 1URHA 3FNJA 1YS0A 2DCQA 1DP2A 1UARA 1QXNA 3TP9A 3OLHA 3ICRA 3TG3A
chains in the Genus database with same CATH topology
1E0CA 3AAYA 1T3KA 1GN0A 1GMXA 3NTAA 3HWIA 2J6PA 2UZQA 3HZUA 1HZMA 3MZZA 2JTQA 2A2KA 3G5JA 3P3AA 3FS5A 2FSXA 3HIXA 3O3WA 1YMDA 5LAMA 3NT6A 1WHBA 1YMLA 3ILMA 3ICSA 3UTNX 2HHGA 2GWFA 1BOIA 4WH9A 3IWHA 1YM9A 5HPAA 3K9RA 5HBOA 1WV9A 3ICTA 2EG4A 3OP3A 3F4AA 2MRMA 3FLHA 1OKGA 1YMKA 2VSWA 1H4MX 2MOIA 3NHVA 3R2UA 3D1PA 2K0ZA 2EG3A 3IPOA 5HBQA 2EG4B 2OUCA 5HBLA 1VEEA 2JTSA 2IFDA 3NTDA 2IFVA 1H4KX 3GK5A 1RHSA 1CWRA 2ORAA 4WH7A 1QB0A 1C25A 1ORBA 4JGTA 2KL3A 2WLRA 5HBPA 1CWTA 1RHDA 1CWSA 3IPPA 3AAXA 2JTRA 4OCGA 4F67A 1BOHA 3I3UA 2WLXA 5LAOA 3TG1B 1TQ1A 1YT8A 3I2VA 2MOLA 3FOJA 1URHA 3FNJA 1YS0A 2DCQA 1DP2A 1UARA 1QXNA 3TP9A 3OLHA 3ICRA 3TG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E0C A;  3AAY A;  1T3K A;  1GN0 A;  1GMX A;  3NTA A;  3HWI A;  2J6P A;  2UZQ A;  3HZU A;  1HZM A;  3MZZ A;  2JTQ A;  2A2K A;  3G5J A;  3P3A A;  3FS5 A;  2FSX A;  3HIX A;  3O3W A;  1YMD A;  5LAM A;  3NT6 A;  1WHB A;  1YML A;  3ILM A;  3ICS A;  3UTN X;  2HHG A;  2GWF A;  1BOI A;  4WH9 A;  3IWH A;  1YM9 A;  5HPA A;  3K9R A;  5HBO A;  1WV9 A;  3ICT A;  2EG4 A;  3OP3 A;  3F4A A;  2MRM A;  3FLH A;  1OKG A;  1YMK A;  2VSW A;  1H4M X;  2MOI A;  3NHV A;  3R2U A;  3D1P A;  2K0Z A;  2EG3 A;  3IPO A;  5HBQ A;  2EG4 B;  2OUC A;  5HBL A;  1VEE A;  2JTS A;  2IFD A;  3NTD A;  2IFV A;  1H4K X;  3GK5 A;  1RHS A;  1CWR A;  2ORA A;  4WH7 A;  1QB0 A;  1C25 A;  1ORB A;  4JGT A;  2KL3 A;  2WLR A;  5HBP A;  1CWT A;  1RHD A;  1CWS A;  3IPP A;  3AAX A;  2JTR A;  4OCG A;  4F67 A;  1BOH A;  3I3U A;  2WLX A;  5LAO A;  3TG1 B;  1TQ1 A;  1YT8 A;  3I2V A;  2MOL A;  3FOJ A;  1URH A;  3FNJ A;  1YS0 A;  2DCQ A;  1DP2 A;  1UAR A;  1QXN A;  3TP9 A;  3OLH A;  3ICR A;  3TG3 A; 
#chains in the Genus database with same CATH topology
 1E0C A;  3AAY A;  1T3K A;  1GN0 A;  1GMX A;  3NTA A;  3HWI A;  2J6P A;  2UZQ A;  3HZU A;  1HZM A;  3MZZ A;  2JTQ A;  2A2K A;  3G5J A;  3P3A A;  3FS5 A;  2FSX A;  3HIX A;  3O3W A;  1YMD A;  5LAM A;  3NT6 A;  1WHB A;  1YML A;  3ILM A;  3ICS A;  3UTN X;  2HHG A;  2GWF A;  1BOI A;  4WH9 A;  3IWH A;  1YM9 A;  5HPA A;  3K9R A;  5HBO A;  1WV9 A;  3ICT A;  2EG4 A;  3OP3 A;  3F4A A;  2MRM A;  3FLH A;  1OKG A;  1YMK A;  2VSW A;  1H4M X;  2MOI A;  3NHV A;  3R2U A;  3D1P A;  2K0Z A;  2EG3 A;  3IPO A;  5HBQ A;  2EG4 B;  2OUC A;  2Q82 A;  5HBL A;  1VEE A;  2JTS A;  2IFD A;  3NTD A;  2IFV A;  1H4K X;  3GK5 A;  1RHS A;  1CWR A;  2ORA A;  4WH7 A;  1QB0 A;  1C25 A;  1ORB A;  4JGT A;  2KL3 A;  2WLR A;  5HBP A;  1CWT A;  1RHD A;  1CWS A;  3IPP A;  3AAX A;  2JTR A;  4OCG A;  4F67 A;  1BOH A;  3I3U A;  2WLX A;  5LAO A;  3TG1 B;  1TQ1 A;  1YT8 A;  3I2V A;  2MOL A;  3FOJ A;  1URH A;  3FNJ A;  1YS0 A;  2DCQ A;  1DP2 A;  1UAR A;  1QXN A;  3TP9 A;  3OLH A;  3ICR A;  3TG3 A; 
#chains in the Genus database with same CATH homology
 1E0C A;  3AAY A;  1T3K A;  1GN0 A;  1GMX A;  3NTA A;  3HWI A;  2J6P A;  2UZQ A;  3HZU A;  1HZM A;  3MZZ A;  2JTQ A;  2A2K A;  3G5J A;  3P3A A;  3FS5 A;  2FSX A;  3HIX A;  3O3W A;  1YMD A;  5LAM A;  3NT6 A;  1WHB A;  1YML A;  3ILM A;  3ICS A;  3UTN X;  2HHG A;  2GWF A;  1BOI A;  4WH9 A;  3IWH A;  1YM9 A;  5HPA A;  3K9R A;  5HBO A;  1WV9 A;  3ICT A;  2EG4 A;  3OP3 A;  3F4A A;  2MRM A;  3FLH A;  1OKG A;  1YMK A;  2VSW A;  1H4M X;  2MOI A;  3NHV A;  3R2U A;  3D1P A;  2K0Z A;  2EG3 A;  3IPO A;  5HBQ A;  2EG4 B;  2OUC A;  5HBL A;  1VEE A;  2JTS A;  2IFD A;  3NTD A;  2IFV A;  1H4K X;  3GK5 A;  1RHS A;  1CWR A;  2ORA A;  4WH7 A;  1QB0 A;  1C25 A;  1ORB A;  4JGT A;  2KL3 A;  2WLR A;  5HBP A;  1CWT A;  1RHD A;  1CWS A;  3IPP A;  3AAX A;  2JTR A;  4OCG A;  4F67 A;  1BOH A;  3I3U A;  2WLX A;  5LAO A;  3TG1 B;  1TQ1 A;  1YT8 A;  3I2V A;  2MOL A;  3FOJ A;  1URH A;  3FNJ A;  1YS0 A;  2DCQ A;  1DP2 A;  1UAR A;  1QXN A;  3TP9 A;  3OLH A;  3ICR A;  3TG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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