3IVDA

Putative 5'-nucleotidase (c4898) from escherichia coli in complex with uridine
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
499
structure length
499
Chain Sequence
LAKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMPFDAVTIGNHEFDHGWDNTLLQLSQAKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGVPARQSSMGGTDVRRALDKDIQTASQVKGLDILITGHAHVGTPEPIKVGNTLILSTDSGGIDVGKLVLDYKEKPHNFTVKNFELKTIYADEWKPDQQTKQVIDGWNKKLDEVVQQTVAQSPVELKRAYGESASLGNLAADALLAAAGKNTQLALTNSGGIRNEIPAGAITMGGVISTFPFPNELVTMELTGKQLRSLMEHGASLSNGVLQVSKGLEMKYDSSKPVGQRVITLTLNGKPIEDATVYHIATQSFLADGGDGFTAFTEGKARNITGGYYVYHAVVDYFKAGNTITDEQLNGMRVKDIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine
rcsb
source organism Escherichia coli o6
molecule tags Hydrolase
molecule keywords Nucleotidase
total genus 165
structure length 499
sequence length 499
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3ivdA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 3ivdA02
1JK7A 3IB7A 5INBA 1S3NA 4M0VA 4UT3A 2IE4C 4UWQA 2BQ8X 4Q7FA 5JPEA 4O43A 3E7BA 1HPUA 1T70A 4H2GA 3H67A 3E7AA 3RL4A 1V73A 3THNA 3QFOA 1QHWA 1IT6A 4H1SA 2O8AA 2BCDA 1S3MA 2JOGA 2NYMC 2QJCA 4OR9A 3C5WC 4J6OA 4UT3B 4MOVA 4I5LC 2QFRA 3LL8A 4UT2A 4O4KA 2QFPA 4TUGA 2HYPA 4HD0A 1TCOA 3PSNA 4FCXA 3RL3A 5B8IA 4O5GA 4LTYA 3H63A 3QFKA 3H69A 2A22A 3IB8A 1OI8A 4TUIA 5IOHA 2WDCA 2P6BA 1S3LA 4H2IA 3GVEA 2NPPC 2Z72A 3V4YA 3CK2A 3ZTVA 1W24A 4XPNA 3IVEA 4B2OA 5HPEA 3AV0A 1SU1A 2KKNA 3P71C 4H2FA 4LACC 4F0ZA 4JA9A 4ZX2A 3THOB 1II7A 1OIDA 1HP1A 1QFCA 2DFJA 4IYPC 3H60A 4ORAA 1S95A 5JPFA 2YVTA 2CV9A 2ZBMA 4KKZA 1UTEA 3QFNA 2GJUA 2XMOA 2Z1AA 2HYOA 1UF3A 3ZU0A 1WARA 3C9FA 1FJMA 3IVDA 2HY1A 1U32A 4MP0A 2IAEC 3H64A 4V0XA 4NZVA 3T1IA 1Z2XA 3H61A 1S70A 1OIEA 3EGGA 4KBPA 3TGHA 5F3WA 3AUZA 2O8GA 4MOYA 1NNWA 4IL1A 2IE3C 4LU9A 2WDFA 3H66A 2Q8UA 2AHDA 4ORBA 4G9JA 3RQZA 2WDEA 4FBKA 2R17A 2NYLC 1AUIA 3DSCA 5C1VA 3QFMA 3K7VC 4ZVZA 3K7WC 3ICFA 3FGAC 5JJTA 5GTUA 4DT2A 3PSOA 3RL5A 1HO5A 4JA7A 3HVQA 1WAO1 3QG5C 1G5BA 1Z2WA 1KBPA 2Z06A 3DW8C 5EQVA 4FBQA 1MF8A 3DSDA 1T71A 4H2BA 5J28A 4V0VA 4I5NC 3H68A 4FBWA 4ORCA 1USHA 1XM7A 1XZWA 3H62B 4H1YP 4V0WA 2NXFA 5DNYA 4WWLA 3JYFA 4DSYA 4O24A 4DHLA 1S8EA 2WDDA 3KBPA 4YKEA 1M63A 2BDXA 3EGHA 3N5UA 2USHA
chains in the Genus database with same CATH superfamily
1JK7A 3IB7A 5INBA 1S3NA 4M0VA 4UT3A 2IE4C 4UWQA 2BQ8X 4Q7FA 5JPEA 4O43A 3E7BA 1HPUA 1T70A 4H2GA 3H67A 3E7AA 3RL4A 1V73A 3THNA 3QFOA 1QHWA 1IT6A 4H1SA 2O8AA 2BCDA 1S3MA 3D03A 2JOGA 2NYMC 2QJCA 2DXNA 4OR9A 3C5WC 4J6OA 4UT3B 4MOVA 4I5LC 2QFRA 3LL8A 4UT2A 4O4KA 2QFPA 4TUGA 2HYPA 4HD0A 1TCOA 3PSNA 2YEQA 4FCXA 3RL3A 5B8IA 4O5GA 4LTYA 3H63A 3QFKA 3H69A 2ZO9B 2A22A 3IB8A 1OI8A 4TUIA 5IOHA 2WDCA 2P6BA 1S3LA 4H2IA 3GVEA 2NPPC 2Z72A 3V4YA 3CK2A 3ZTVA 1W24A 3FLOA 3IVEA 4XPNA 4B2OA 5HPEA 3AV0A 1SU1A 2KKNA 3P71C 4H2FA 4LACC 4F0ZA 4JA9A 4ZX2A 3THOB 1II7A 1OIDA 1HP1A 1QFCA 2DFJA 4IYPC 3H60A 4ORAA 1S95A 5JPFA 2YVTA 2CV9A 2ZBMA 4KKZA 1UTEA 3QFNA 2GJUA 2XMOA 2DXLA 2Z1AA 2HYOA 1UF3A 3ZU0A 1WARA 1FJMA 3C9FA 3IVDA 2HY1A 1U32A 4MP0A 2IAEC 3H64A 4V0XA 4NZVA 3T1IA 1Z2XA 3H61A 1S70A 1OIEA 3EGGA 4KBPA 3TGHA 5F3WA 3AUZA 2O8GA 4MOYA 1NNWA 4IL1A 2IE3C 4LU9A 2WDFA 3H66A 2Q8UA 2AHDA 4ORBA 4G9JA 3RQZA 2WDEA 4FBKA 2R17A 2NYLC 1AUIA 3DSCA 5C1VA 3QFMA 3K7VC 4ZVZA 3K7WC 3ICFA 3FGAC 5JJTA 5GTUA 4DT2A 3PSOA 3RL5A 1HO5A 4JA7A 3E0JA 1WAO1 3HVQA 3QG5C 1G5BA 1Z2WA 1KBPA 2Z06A 3DW8C 5EQVA 4FBQA 1MF8A 3DSDA 1T71A 4H2BA 5J28A 4V0VA 4I5NC 3H68A 4FBWA 4ORCA 1USHA 1XM7A 1XZWA 3H62B 4H1YP 4V0WA 2NXFA 5DNYA 4WWLA 3JYFA 4DSYA 4O24A 4DHLA 1S8EA 2WDDA 3KBPA 4YKEA 1M63A 2BDXA 3EGHA 2ZOAA 3N5UA 2USHA
chains in the Genus database with same CATH topology
1JK7A 3IB7A 5INBA 1S3NA 4M0VA 4UT3A 2IE4C 4UWQA 2BQ8X 4Q7FA 5JPEA 4O43A 3E7BA 1HPUA 1T70A 4H2GA 3H67A 3E7AA 3RL4A 1V73A 3THNA 3QFOA 1QHWA 1IT6A 4H1SA 2O8AA 2BCDA 1S3MA 3D03A 2JOGA 2NYMC 2QJCA 2DXNA 4OR9A 3C5WC 4J6OA 4UT3B 4MOVA 4I5LC 2QFRA 3LL8A 4UT2A 4O4KA 2QFPA 4TUGA 2HYPA 4HD0A 1TCOA 3PSNA 2YEQA 4FCXA 3RL3A 5B8IA 4O5GA 4LTYA 3H63A 3QFKA 3H69A 2ZO9B 2A22A 3IB8A 1OI8A 4TUIA 5IOHA 2WDCA 2P6BA 1S3LA 4H2IA 3GVEA 2NPPC 2Z72A 3V4YA 3CK2A 3ZTVA 1W24A 3FLOA 3IVEA 4XPNA 4B2OA 5HPEA 3AV0A 1SU1A 2KKNA 3P71C 4H2FA 4LACC 4F0ZA 4JA9A 4ZX2A 3THOB 1II7A 1OIDA 1HP1A 1QFCA 2DFJA 4IYPC 3H60A 4ORAA 1S95A 5JPFA 2YVTA 2CV9A 2ZBMA 4KKZA 1UTEA 3QFNA 2GJUA 2XMOA 2DXLA 2Z1AA 2HYOA 1UF3A 3ZU0A 1WARA 1FJMA 3C9FA 3IVDA 2HY1A 1U32A 4MP0A 2IAEC 3H64A 4V0XA 4NZVA 3T1IA 1Z2XA 3H61A 1S70A 1OIEA 3EGGA 4KBPA 3TGHA 5F3WA 3AUZA 2O8GA 4MOYA 1NNWA 4IL1A 2IE3C 4LU9A 2WDFA 3H66A 2Q8UA 2AHDA 4ORBA 4G9JA 3RQZA 2WDEA 4FBKA 2R17A 2NYLC 1AUIA 3DSCA 5C1VA 3QFMA 3K7VC 4ZVZA 3K7WC 3ICFA 3FGAC 5JJTA 5GTUA 4DT2A 3PSOA 3RL5A 1HO5A 4JA7A 3E0JA 1WAO1 3HVQA 3QG5C 1G5BA 1Z2WA 1KBPA 2Z06A 3DW8C 5EQVA 4FBQA 1MF8A 3DSDA 1T71A 4H2BA 5J28A 4V0VA 4I5NC 3H68A 4FBWA 4ORCA 1USHA 1XM7A 1XZWA 3H62B 4H1YP 4V0WA 2NXFA 5DNYA 4WWLA 3JYFA 4DSYA 4O24A 4DHLA 1S8EA 2WDDA 3KBPA 4YKEA 1M63A 2BDXA 3EGHA 2ZOAA 3N5UA 2USHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JK7 A;  3IB7 A;  5INB A;  1S3N A;  4M0V A;  4UT3 A;  2IE4 C;  4UWQ A;  2BQ8 X;  4Q7F A;  5JPE A;  4O43 A;  3E7B A;  1HPU A;  1T70 A;  4H2G A;  3H67 A;  3E7A A;  3RL4 A;  1V73 A;  3THN A;  3QFO A;  1QHW A;  1IT6 A;  4H1S A;  2O8A A;  2BCD A;  1S3M A;  2JOG A;  2NYM C;  2QJC A;  4OR9 A;  3C5W C;  4J6O A;  4UT3 B;  4MOV A;  4I5L C;  2QFR A;  3LL8 A;  4UT2 A;  4O4K A;  2QFP A;  4TUG A;  2HYP A;  4HD0 A;  1TCO A;  3PSN A;  4FCX A;  3RL3 A;  5B8I A;  4O5G A;  4LTY A;  3H63 A;  3QFK A;  3H69 A;  2A22 A;  3IB8 A;  1OI8 A;  4TUI A;  5IOH A;  2WDC A;  2P6B A;  1S3L A;  4H2I A;  3GVE A;  2NPP C;  2Z72 A;  3V4Y A;  3CK2 A;  3ZTV A;  1W24 A;  4XPN A;  3IVE A;  4B2O A;  5HPE A;  3AV0 A;  1SU1 A;  2KKN A;  3P71 C;  4H2F A;  4LAC C;  4F0Z A;  4JA9 A;  4ZX2 A;  3THO B;  1II7 A;  1OID A;  1HP1 A;  1QFC A;  2DFJ A;  4IYP C;  3H60 A;  4ORA A;  1S95 A;  5JPF A;  2YVT A;  2CV9 A;  2ZBM A;  4KKZ A;  1UTE A;  3QFN A;  2GJU A;  2XMO A;  2Z1A A;  2HYO A;  1UF3 A;  3ZU0 A;  1WAR A;  3C9F A;  1FJM A;  3IVD A;  2HY1 A;  1U32 A;  4MP0 A;  2IAE C;  3H64 A;  4V0X A;  4NZV A;  3T1I A;  1Z2X A;  3H61 A;  1S70 A;  1OIE A;  3EGG A;  4KBP A;  3TGH A;  5F3W A;  3AUZ A;  2O8G A;  4MOY A;  1NNW A;  4IL1 A;  2IE3 C;  4LU9 A;  2WDF A;  3H66 A;  2Q8U A;  2AHD A;  4ORB A;  4G9J A;  3RQZ A;  2WDE A;  4FBK A;  2R17 A;  2NYL C;  1AUI A;  3DSC A;  5C1V A;  3QFM A;  3K7V C;  4ZVZ A;  3K7W C;  3ICF A;  3FGA C;  5JJT A;  5GTU A;  4DT2 A;  3PSO A;  3RL5 A;  1HO5 A;  4JA7 A;  3HVQ A;  1WAO 1;  3QG5 C;  1G5B A;  1Z2W A;  1KBP A;  2Z06 A;  3DW8 C;  5EQV A;  4FBQ A;  1MF8 A;  3DSD A;  1T71 A;  4H2B A;  5J28 A;  4V0V A;  4I5N C;  3H68 A;  4FBW A;  4ORC A;  1USH A;  1XM7 A;  1XZW A;  3H62 B;  4H1Y P;  4V0W A;  2NXF A;  5DNY A;  4WWL A;  3JYF A;  4DSY A;  4O24 A;  4DHL A;  1S8E A;  2WDD A;  3KBP A;  4YKE A;  1M63 A;  2BDX A;  3EGH A;  3N5U A;  2USH A; 
#chains in the Genus database with same CATH topology
 1JK7 A;  3IB7 A;  5INB A;  1S3N A;  4M0V A;  4UT3 A;  2IE4 C;  4UWQ A;  2BQ8 X;  4Q7F A;  5JPE A;  4O43 A;  3E7B A;  1HPU A;  1T70 A;  4H2G A;  3H67 A;  3E7A A;  3RL4 A;  1V73 A;  3THN A;  3QFO A;  1QHW A;  1IT6 A;  4H1S A;  2O8A A;  2BCD A;  1S3M A;  3D03 A;  2JOG A;  2NYM C;  2QJC A;  2DXN A;  4OR9 A;  3C5W C;  4J6O A;  4UT3 B;  4MOV A;  4I5L C;  2QFR A;  3LL8 A;  4UT2 A;  4O4K A;  2QFP A;  4TUG A;  2HYP A;  4HD0 A;  1TCO A;  3PSN A;  2YEQ A;  4FCX A;  3RL3 A;  5B8I A;  4O5G A;  4LTY A;  3H63 A;  3QFK A;  3H69 A;  2ZO9 B;  2A22 A;  3IB8 A;  1OI8 A;  4TUI A;  5IOH A;  2WDC A;  2P6B A;  1S3L A;  4H2I A;  3GVE A;  2NPP C;  2Z72 A;  3V4Y A;  3CK2 A;  3ZTV A;  1W24 A;  3FLO A;  3IVE A;  4XPN A;  4B2O A;  5HPE A;  3AV0 A;  1SU1 A;  2KKN A;  3P71 C;  4H2F A;  4LAC C;  4F0Z A;  4JA9 A;  4ZX2 A;  3THO B;  1II7 A;  1OID A;  1HP1 A;  1QFC A;  2DFJ A;  4IYP C;  3H60 A;  4ORA A;  1S95 A;  5JPF A;  2YVT A;  2CV9 A;  2ZBM A;  4KKZ A;  1UTE A;  3QFN A;  2GJU A;  2XMO A;  2DXL A;  2Z1A A;  2HYO A;  1UF3 A;  3ZU0 A;  1WAR A;  1FJM A;  3C9F A;  3IVD A;  2HY1 A;  1U32 A;  4MP0 A;  2IAE C;  3H64 A;  4V0X A;  4NZV A;  3T1I A;  1Z2X A;  3H61 A;  1S70 A;  1OIE A;  3EGG A;  4KBP A;  3TGH A;  5F3W A;  3AUZ A;  2O8G A;  4MOY A;  1NNW A;  4IL1 A;  2IE3 C;  4LU9 A;  2WDF A;  3H66 A;  2Q8U A;  2AHD A;  4ORB A;  4G9J A;  3RQZ A;  2WDE A;  4FBK A;  2R17 A;  2NYL C;  1AUI A;  3DSC A;  5C1V A;  3QFM A;  3K7V C;  4ZVZ A;  3K7W C;  3ICF A;  3FGA C;  5JJT A;  5GTU A;  4DT2 A;  3PSO A;  3RL5 A;  1HO5 A;  4JA7 A;  3E0J A;  1WAO 1;  3HVQ A;  3QG5 C;  1G5B A;  1Z2W A;  1KBP A;  2Z06 A;  3DW8 C;  5EQV A;  4FBQ A;  1MF8 A;  3DSD A;  1T71 A;  4H2B A;  5J28 A;  4V0V A;  4I5N C;  3H68 A;  4FBW A;  4ORC A;  1USH A;  1XM7 A;  1XZW A;  3H62 B;  4H1Y P;  4V0W A;  2NXF A;  5DNY A;  4WWL A;  3JYF A;  4DSY A;  4O24 A;  4DHL A;  1S8E A;  2WDD A;  3KBP A;  4YKE A;  1M63 A;  2BDX A;  3EGH A;  2ZOA A;  3N5U A;  2USH A; 
#chains in the Genus database with same CATH homology
 1JK7 A;  3IB7 A;  5INB A;  1S3N A;  4M0V A;  4UT3 A;  2IE4 C;  4UWQ A;  2BQ8 X;  4Q7F A;  5JPE A;  4O43 A;  3E7B A;  1HPU A;  1T70 A;  4H2G A;  3H67 A;  3E7A A;  3RL4 A;  1V73 A;  3THN A;  3QFO A;  1QHW A;  1IT6 A;  4H1S A;  2O8A A;  2BCD A;  1S3M A;  3D03 A;  2JOG A;  2NYM C;  2QJC A;  2DXN A;  4OR9 A;  3C5W C;  4J6O A;  4UT3 B;  4MOV A;  4I5L C;  2QFR A;  3LL8 A;  4UT2 A;  4O4K A;  2QFP A;  4TUG A;  2HYP A;  4HD0 A;  1TCO A;  3PSN A;  2YEQ A;  4FCX A;  3RL3 A;  5B8I A;  4O5G A;  4LTY A;  3H63 A;  3QFK A;  3H69 A;  2ZO9 B;  2A22 A;  3IB8 A;  1OI8 A;  4TUI A;  5IOH A;  2WDC A;  2P6B A;  1S3L A;  4H2I A;  3GVE A;  2NPP C;  2Z72 A;  3V4Y A;  3CK2 A;  3ZTV A;  1W24 A;  3FLO A;  3IVE A;  4XPN A;  4B2O A;  5HPE A;  3AV0 A;  1SU1 A;  2KKN A;  3P71 C;  4H2F A;  4LAC C;  4F0Z A;  4JA9 A;  4ZX2 A;  3THO B;  1II7 A;  1OID A;  1HP1 A;  1QFC A;  2DFJ A;  4IYP C;  3H60 A;  4ORA A;  1S95 A;  5JPF A;  2YVT A;  2CV9 A;  2ZBM A;  4KKZ A;  1UTE A;  3QFN A;  2GJU A;  2XMO A;  2DXL A;  2Z1A A;  2HYO A;  1UF3 A;  3ZU0 A;  1WAR A;  1FJM A;  3C9F A;  3IVD A;  2HY1 A;  1U32 A;  4MP0 A;  2IAE C;  3H64 A;  4V0X A;  4NZV A;  3T1I A;  1Z2X A;  3H61 A;  1S70 A;  1OIE A;  3EGG A;  4KBP A;  3TGH A;  5F3W A;  3AUZ A;  2O8G A;  4MOY A;  1NNW A;  4IL1 A;  2IE3 C;  4LU9 A;  2WDF A;  3H66 A;  2Q8U A;  2AHD A;  4ORB A;  4G9J A;  3RQZ A;  2WDE A;  4FBK A;  2R17 A;  2NYL C;  1AUI A;  3DSC A;  5C1V A;  3QFM A;  3K7V C;  4ZVZ A;  3K7W C;  3ICF A;  3FGA C;  5JJT A;  5GTU A;  4DT2 A;  3PSO A;  3RL5 A;  1HO5 A;  4JA7 A;  3E0J A;  1WAO 1;  3HVQ A;  3QG5 C;  1G5B A;  1Z2W A;  1KBP A;  2Z06 A;  3DW8 C;  5EQV A;  4FBQ A;  1MF8 A;  3DSD A;  1T71 A;  4H2B A;  5J28 A;  4V0V A;  4I5N C;  3H68 A;  4FBW A;  4ORC A;  1USH A;  1XM7 A;  1XZW A;  3H62 B;  4H1Y P;  4V0W A;  2NXF A;  5DNY A;  4WWL A;  3JYF A;  4DSY A;  4O24 A;  4DHL A;  1S8E A;  2WDD A;  3KBP A;  4YKE A;  1M63 A;  2BDX A;  3EGH A;  2ZOA A;  3N5U A;  2USH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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