3IVEA

Putative 5'-nucleotidase (c4898) from escherichia coli in complex with cytidine
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
498
structure length
495
Chain Sequence
AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMPFDAVTIGNHEFDHGWDNTLLQLSQAKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGVPARQSSMDVRRALDKDIQTASQVKGLDILITGHAHVGTPEPIKVGNTLILSTDSGGIDVGKLVLDYKEKPHNFTVKNFELKTIYADEWKPDQQTKQVIDGWNKKLDEVVQQTVAQSPVELKRAYGESASLGNLAADALLAAAGKNTQLALTNSGGIRNEIPAGAITMGGVISTFPFPNELVTMELTGKQLRSLMEHGASLSNGVLQVSKGLEMKYDSSKPVGQRVITLTLNGKPIEDATVYHIATQSFLADGGDGFTAFTEGKARNITGGYYVYHAVVDYFKAGNTITDEQLNGMRVKDIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Cytidine
rcsb
source organism Escherichia coli o6
molecule tags Hydrolase
molecule keywords Nucleotidase
total genus 171
structure length 495
sequence length 498
ec nomenclature
pdb deposition date 2009-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3iveA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 3iveA02
1U32A 3C5WC 4O4KA 2O8AA 1S8EA 2NXFA 3RL4A 5JJTA 5INBA 2ZBMA 3DSCA 3QG5C 1UTEA 1IT6A 1S3NA 3RL5A 1S95A 3H63A 3QFKA 4IYPC 4JA9A 2AHDA 4IL1A 3PSOA 4F0ZA 2NYMC 2Z06A 2Q8UA 4ORCA 2IAEC 3JYFA 4H2IA 3PSNA 1WARA 1M63A 3C9FA 2WDCA 1QHWA 1SU1A 4J6OA 3P71C 1HP1A 1UF3A 2BCDA 4I5NC 3E7BA 3H66A 4XPNA 3H69A 4H2GA 1V73A 3ZU0A 3QFOA 5IOHA 4G9JA 4V0XA 1TCOA 3H67A 4UWQA 4O43A 2DFJA 4Q7FA 4TUIA 2HYOA 4ORAA 2KKNA 1FJMA 3H60A 3QFNA 2A22A 4ORBA 2XMOA 5F3WA 4MOVA 3K7WC 4I5LC 5J28A 2WDFA 2BDXA 4H1SA 2BQ8X 5EQVA 3EGHA 4FCXA 3ZTVA 3AUZA 2CV9A 4MP0A 1MF8A 3FGAC 4DSYA 2P6BA 1W24A 4LTYA 4KBPA 3IVEA 4KKZA 3DSDA 1XM7A 3THNA 3DW8C 3LL8A 4OR9A 2JOGA 4NZVA 4WWLA 1OIDA 4LU9A 2Z1AA 3KBPA 3EGGA 4JA7A 4H2BA 2WDDA 1S3LA 4DT2A 1AUIA 4TUGA 1OI8A 3K7VC 3TGHA 4YKEA 2QFRA 1OIEA 3RL3A 2YVTA 5HPEA 2IE3C 3THOB 4O5GA 3QFMA 1WAO1 3IB8A 2IE4C 4H1YP 3GVEA 3H61A 3IB7A 3E7AA 4UT3A 2O8GA 1G5BA 4FBWA 1QFCA 2QFPA 3V4YA 5B8IA 4UT3B 1NNWA 4V0VA 4LACC 4DHLA 2NYLC 4FBKA 1HPUA 4B2OA 1Z2XA 1HO5A 4M0VA 3HVQA 4V0WA 3ICFA 3IVDA 1S70A 4MOYA 2Z72A 2NPPC 3H68A 1USHA 4ZX2A 2HY1A 4H2FA 3H62B 1KBPA 2GJUA 3N5UA 3RQZA 2QJCA 5JPFA 1II7A 1T71A 3H64A 1XZWA 2USHA 4UT2A 5C1VA 4FBQA 4HD0A 5DNYA 1Z2WA 4O24A 1T70A 3AV0A 4ZVZA 5JPEA 3CK2A 2WDEA 2HYPA 3T1IA 1S3MA 5GTUA 2R17A 1JK7A
chains in the Genus database with same CATH superfamily
1U32A 3C5WC 4O4KA 2O8AA 1S8EA 2NXFA 3RL4A 5JJTA 5INBA 2ZBMA 3DSCA 3QG5C 1UTEA 1IT6A 1S3NA 3RL5A 1S95A 3H63A 3QFKA 4IYPC 4JA9A 2AHDA 4IL1A 3PSOA 4F0ZA 2NYMC 2Z06A 2Q8UA 4ORCA 2IAEC 3JYFA 4H2IA 2ZOAA 3PSNA 1WARA 1M63A 3C9FA 2WDCA 1QHWA 1SU1A 4J6OA 3P71C 1HP1A 1UF3A 2BCDA 4I5NC 3E7BA 3H66A 4XPNA 3H69A 4H2GA 1V73A 3ZU0A 3QFOA 5IOHA 4G9JA 4V0XA 1TCOA 3H67A 4UWQA 4O43A 2DFJA 4Q7FA 4TUIA 2HYOA 4ORAA 2KKNA 1FJMA 2DXNA 3H60A 2A22A 3QFNA 2XMOA 4ORBA 4MOVA 5F3WA 3K7WC 4I5LC 5J28A 2WDFA 2BDXA 4H1SA 2BQ8X 5EQVA 3EGHA 2DXLA 4FCXA 3ZTVA 3AUZA 2CV9A 4MP0A 1MF8A 3FGAC 4DSYA 2P6BA 1W24A 4LTYA 4KBPA 3IVEA 4KKZA 3DSDA 1XM7A 3THNA 3DW8C 3LL8A 4OR9A 2JOGA 4NZVA 4WWLA 1OIDA 4LU9A 2Z1AA 2ZO9B 3D03A 3KBPA 3EGGA 4JA7A 4H2BA 2WDDA 1S3LA 4DT2A 1AUIA 4TUGA 2YEQA 1OI8A 3K7VC 3TGHA 4YKEA 2QFRA 1OIEA 3RL3A 2YVTA 5HPEA 2IE3C 3THOB 4O5GA 3QFMA 1WAO1 3IB8A 2IE4C 4H1YP 3GVEA 3H61A 3IB7A 3E7AA 4UT3A 2O8GA 1G5BA 4FBWA 1QFCA 2QFPA 3V4YA 5B8IA 4UT3B 1NNWA 4V0VA 3E0JA 4LACC 4DHLA 2NYLC 4FBKA 1HPUA 4B2OA 1Z2XA 1HO5A 4M0VA 3HVQA 4V0WA 3ICFA 3IVDA 1S70A 4MOYA 2Z72A 2NPPC 3H68A 1USHA 4ZX2A 2HY1A 4H2FA 3H62B 1KBPA 2GJUA 3N5UA 3RQZA 2QJCA 5JPFA 1II7A 1T71A 3H64A 1XZWA 2USHA 4UT2A 5C1VA 4FBQA 4HD0A 5DNYA 1Z2WA 4O24A 1T70A 3AV0A 4ZVZA 5JPEA 3FLOA 3CK2A 2WDEA 2HYPA 3T1IA 1S3MA 5GTUA 2R17A 1JK7A
chains in the Genus database with same CATH topology
1U32A 3C5WC 4O4KA 2O8AA 1S8EA 2NXFA 3RL4A 5JJTA 5INBA 2ZBMA 3DSCA 3QG5C 1UTEA 1IT6A 1S3NA 3RL5A 1S95A 3H63A 3QFKA 4IYPC 4JA9A 2AHDA 4IL1A 3PSOA 4F0ZA 2NYMC 2Z06A 2Q8UA 4ORCA 2IAEC 3JYFA 4H2IA 2ZOAA 3PSNA 1WARA 1M63A 3C9FA 2WDCA 1QHWA 1SU1A 4J6OA 3P71C 1HP1A 1UF3A 2BCDA 4I5NC 3E7BA 3H66A 4XPNA 3H69A 4H2GA 1V73A 3ZU0A 3QFOA 5IOHA 4G9JA 4V0XA 1TCOA 3H67A 4UWQA 4O43A 2DFJA 4Q7FA 4TUIA 2HYOA 4ORAA 2KKNA 1FJMA 2DXNA 3H60A 2A22A 3QFNA 2XMOA 4ORBA 4MOVA 5F3WA 3K7WC 4I5LC 5J28A 2WDFA 2BDXA 4H1SA 2BQ8X 5EQVA 3EGHA 2DXLA 4FCXA 3ZTVA 3AUZA 2CV9A 4MP0A 1MF8A 3FGAC 4DSYA 2P6BA 1W24A 4LTYA 4KBPA 3IVEA 4KKZA 3DSDA 1XM7A 3THNA 3DW8C 3LL8A 4OR9A 2JOGA 4NZVA 4WWLA 1OIDA 4LU9A 2Z1AA 2ZO9B 3D03A 3KBPA 3EGGA 4JA7A 4H2BA 2WDDA 1S3LA 4DT2A 1AUIA 4TUGA 2YEQA 1OI8A 3K7VC 3TGHA 4YKEA 2QFRA 1OIEA 3RL3A 2YVTA 5HPEA 2IE3C 3THOB 4O5GA 3QFMA 1WAO1 3IB8A 2IE4C 4H1YP 3GVEA 3H61A 3IB7A 3E7AA 4UT3A 2O8GA 1G5BA 4FBWA 1QFCA 2QFPA 3V4YA 5B8IA 4UT3B 1NNWA 4V0VA 3E0JA 4LACC 4DHLA 2NYLC 4FBKA 1HPUA 4B2OA 1Z2XA 1HO5A 4M0VA 3HVQA 4V0WA 3ICFA 3IVDA 1S70A 4MOYA 2Z72A 2NPPC 3H68A 1USHA 4ZX2A 2HY1A 4H2FA 3H62B 1KBPA 2GJUA 3N5UA 3RQZA 2QJCA 5JPFA 1II7A 1T71A 3H64A 1XZWA 2USHA 4UT2A 5C1VA 4FBQA 4HD0A 5DNYA 1Z2WA 4O24A 1T70A 3AV0A 4ZVZA 5JPEA 3FLOA 3CK2A 2WDEA 2HYPA 3T1IA 1S3MA 5GTUA 2R17A 1JK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U32 A;  3C5W C;  4O4K A;  2O8A A;  1S8E A;  2NXF A;  3RL4 A;  5JJT A;  5INB A;  2ZBM A;  3DSC A;  3QG5 C;  1UTE A;  1IT6 A;  1S3N A;  3RL5 A;  1S95 A;  3H63 A;  3QFK A;  4IYP C;  4JA9 A;  2AHD A;  4IL1 A;  3PSO A;  4F0Z A;  2NYM C;  2Z06 A;  2Q8U A;  4ORC A;  2IAE C;  3JYF A;  4H2I A;  3PSN A;  1WAR A;  1M63 A;  3C9F A;  2WDC A;  1QHW A;  1SU1 A;  4J6O A;  3P71 C;  1HP1 A;  1UF3 A;  2BCD A;  4I5N C;  3E7B A;  3H66 A;  4XPN A;  3H69 A;  4H2G A;  1V73 A;  3ZU0 A;  3QFO A;  5IOH A;  4G9J A;  4V0X A;  1TCO A;  3H67 A;  4UWQ A;  4O43 A;  2DFJ A;  4Q7F A;  4TUI A;  2HYO A;  4ORA A;  2KKN A;  1FJM A;  3H60 A;  3QFN A;  2A22 A;  4ORB A;  2XMO A;  5F3W A;  4MOV A;  3K7W C;  4I5L C;  5J28 A;  2WDF A;  2BDX A;  4H1S A;  2BQ8 X;  5EQV A;  3EGH A;  4FCX A;  3ZTV A;  3AUZ A;  2CV9 A;  4MP0 A;  1MF8 A;  3FGA C;  4DSY A;  2P6B A;  1W24 A;  4LTY A;  4KBP A;  3IVE A;  4KKZ A;  3DSD A;  1XM7 A;  3THN A;  3DW8 C;  3LL8 A;  4OR9 A;  2JOG A;  4NZV A;  4WWL A;  1OID A;  4LU9 A;  2Z1A A;  3KBP A;  3EGG A;  4JA7 A;  4H2B A;  2WDD A;  1S3L A;  4DT2 A;  1AUI A;  4TUG A;  1OI8 A;  3K7V C;  3TGH A;  4YKE A;  2QFR A;  1OIE A;  3RL3 A;  2YVT A;  5HPE A;  2IE3 C;  3THO B;  4O5G A;  3QFM A;  1WAO 1;  3IB8 A;  2IE4 C;  4H1Y P;  3GVE A;  3H61 A;  3IB7 A;  3E7A A;  4UT3 A;  2O8G A;  1G5B A;  4FBW A;  1QFC A;  2QFP A;  3V4Y A;  5B8I A;  4UT3 B;  1NNW A;  4V0V A;  4LAC C;  4DHL A;  2NYL C;  4FBK A;  1HPU A;  4B2O A;  1Z2X A;  1HO5 A;  4M0V A;  3HVQ A;  4V0W A;  3ICF A;  3IVD A;  1S70 A;  4MOY A;  2Z72 A;  2NPP C;  3H68 A;  1USH A;  4ZX2 A;  2HY1 A;  4H2F A;  3H62 B;  1KBP A;  2GJU A;  3N5U A;  3RQZ A;  2QJC A;  5JPF A;  1II7 A;  1T71 A;  3H64 A;  1XZW A;  2USH A;  4UT2 A;  5C1V A;  4FBQ A;  4HD0 A;  5DNY A;  1Z2W A;  4O24 A;  1T70 A;  3AV0 A;  4ZVZ A;  5JPE A;  3CK2 A;  2WDE A;  2HYP A;  3T1I A;  1S3M A;  5GTU A;  2R17 A;  1JK7 A; 
#chains in the Genus database with same CATH topology
 1U32 A;  3C5W C;  4O4K A;  2O8A A;  1S8E A;  2NXF A;  3RL4 A;  5JJT A;  5INB A;  2ZBM A;  3DSC A;  3QG5 C;  1UTE A;  1IT6 A;  1S3N A;  3RL5 A;  1S95 A;  3H63 A;  3QFK A;  4IYP C;  4JA9 A;  2AHD A;  4IL1 A;  3PSO A;  4F0Z A;  2NYM C;  2Z06 A;  2Q8U A;  4ORC A;  2IAE C;  3JYF A;  4H2I A;  2ZOA A;  3PSN A;  1WAR A;  1M63 A;  3C9F A;  2WDC A;  1QHW A;  1SU1 A;  4J6O A;  3P71 C;  1HP1 A;  1UF3 A;  2BCD A;  4I5N C;  3E7B A;  3H66 A;  4XPN A;  3H69 A;  4H2G A;  1V73 A;  3ZU0 A;  3QFO A;  5IOH A;  4G9J A;  4V0X A;  1TCO A;  3H67 A;  4UWQ A;  4O43 A;  2DFJ A;  4Q7F A;  4TUI A;  2HYO A;  4ORA A;  2KKN A;  1FJM A;  2DXN A;  3H60 A;  2A22 A;  3QFN A;  2XMO A;  4ORB A;  4MOV A;  5F3W A;  3K7W C;  4I5L C;  5J28 A;  2WDF A;  2BDX A;  4H1S A;  2BQ8 X;  5EQV A;  3EGH A;  2DXL A;  4FCX A;  3ZTV A;  3AUZ A;  2CV9 A;  4MP0 A;  1MF8 A;  3FGA C;  4DSY A;  2P6B A;  1W24 A;  4LTY A;  4KBP A;  3IVE A;  4KKZ A;  3DSD A;  1XM7 A;  3THN A;  3DW8 C;  3LL8 A;  4OR9 A;  2JOG A;  4NZV A;  4WWL A;  1OID A;  4LU9 A;  2Z1A A;  2ZO9 B;  3D03 A;  3KBP A;  3EGG A;  4JA7 A;  4H2B A;  2WDD A;  1S3L A;  4DT2 A;  1AUI A;  4TUG A;  2YEQ A;  1OI8 A;  3K7V C;  3TGH A;  4YKE A;  2QFR A;  1OIE A;  3RL3 A;  2YVT A;  5HPE A;  2IE3 C;  3THO B;  4O5G A;  3QFM A;  1WAO 1;  3IB8 A;  2IE4 C;  4H1Y P;  3GVE A;  3H61 A;  3IB7 A;  3E7A A;  4UT3 A;  2O8G A;  1G5B A;  4FBW A;  1QFC A;  2QFP A;  3V4Y A;  5B8I A;  4UT3 B;  1NNW A;  4V0V A;  3E0J A;  4LAC C;  4DHL A;  2NYL C;  4FBK A;  1HPU A;  4B2O A;  1Z2X A;  1HO5 A;  4M0V A;  3HVQ A;  4V0W A;  3ICF A;  3IVD A;  1S70 A;  4MOY A;  2Z72 A;  2NPP C;  3H68 A;  1USH A;  4ZX2 A;  2HY1 A;  4H2F A;  3H62 B;  1KBP A;  2GJU A;  3N5U A;  3RQZ A;  2QJC A;  5JPF A;  1II7 A;  1T71 A;  3H64 A;  1XZW A;  2USH A;  4UT2 A;  5C1V A;  4FBQ A;  4HD0 A;  5DNY A;  1Z2W A;  4O24 A;  1T70 A;  3AV0 A;  4ZVZ A;  5JPE A;  3FLO A;  3CK2 A;  2WDE A;  2HYP A;  3T1I A;  1S3M A;  5GTU A;  2R17 A;  1JK7 A; 
#chains in the Genus database with same CATH homology
 1U32 A;  3C5W C;  4O4K A;  2O8A A;  1S8E A;  2NXF A;  3RL4 A;  5JJT A;  5INB A;  2ZBM A;  3DSC A;  3QG5 C;  1UTE A;  1IT6 A;  1S3N A;  3RL5 A;  1S95 A;  3H63 A;  3QFK A;  4IYP C;  4JA9 A;  2AHD A;  4IL1 A;  3PSO A;  4F0Z A;  2NYM C;  2Z06 A;  2Q8U A;  4ORC A;  2IAE C;  3JYF A;  4H2I A;  2ZOA A;  3PSN A;  1WAR A;  1M63 A;  3C9F A;  2WDC A;  1QHW A;  1SU1 A;  4J6O A;  3P71 C;  1HP1 A;  1UF3 A;  2BCD A;  4I5N C;  3E7B A;  3H66 A;  4XPN A;  3H69 A;  4H2G A;  1V73 A;  3ZU0 A;  3QFO A;  5IOH A;  4G9J A;  4V0X A;  1TCO A;  3H67 A;  4UWQ A;  4O43 A;  2DFJ A;  4Q7F A;  4TUI A;  2HYO A;  4ORA A;  2KKN A;  1FJM A;  2DXN A;  3H60 A;  2A22 A;  3QFN A;  2XMO A;  4ORB A;  4MOV A;  5F3W A;  3K7W C;  4I5L C;  5J28 A;  2WDF A;  2BDX A;  4H1S A;  2BQ8 X;  5EQV A;  3EGH A;  2DXL A;  4FCX A;  3ZTV A;  3AUZ A;  2CV9 A;  4MP0 A;  1MF8 A;  3FGA C;  4DSY A;  2P6B A;  1W24 A;  4LTY A;  4KBP A;  3IVE A;  4KKZ A;  3DSD A;  1XM7 A;  3THN A;  3DW8 C;  3LL8 A;  4OR9 A;  2JOG A;  4NZV A;  4WWL A;  1OID A;  4LU9 A;  2Z1A A;  2ZO9 B;  3D03 A;  3KBP A;  3EGG A;  4JA7 A;  4H2B A;  2WDD A;  1S3L A;  4DT2 A;  1AUI A;  4TUG A;  2YEQ A;  1OI8 A;  3K7V C;  3TGH A;  4YKE A;  2QFR A;  1OIE A;  3RL3 A;  2YVT A;  5HPE A;  2IE3 C;  3THO B;  4O5G A;  3QFM A;  1WAO 1;  3IB8 A;  2IE4 C;  4H1Y P;  3GVE A;  3H61 A;  3IB7 A;  3E7A A;  4UT3 A;  2O8G A;  1G5B A;  4FBW A;  1QFC A;  2QFP A;  3V4Y A;  5B8I A;  4UT3 B;  1NNW A;  4V0V A;  3E0J A;  4LAC C;  4DHL A;  2NYL C;  4FBK A;  1HPU A;  4B2O A;  1Z2X A;  1HO5 A;  4M0V A;  3HVQ A;  4V0W A;  3ICF A;  3IVD A;  1S70 A;  4MOY A;  2Z72 A;  2NPP C;  3H68 A;  1USH A;  4ZX2 A;  2HY1 A;  4H2F A;  3H62 B;  1KBP A;  2GJU A;  3N5U A;  3RQZ A;  2QJC A;  5JPF A;  1II7 A;  1T71 A;  3H64 A;  1XZW A;  2USH A;  4UT2 A;  5C1V A;  4FBQ A;  4HD0 A;  5DNY A;  1Z2W A;  4O24 A;  1T70 A;  3AV0 A;  4ZVZ A;  5JPE A;  3FLO A;  3CK2 A;  2WDE A;  2HYP A;  3T1I A;  1S3M A;  5GTU A;  2R17 A;  1JK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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