3J63A

Unified assembly mechanism of asc-dependent inflammasomes
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
91
structure length
91
Chain Sequence
MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLETYGAELTANVLRDMGLQEMAGQLQAATHQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Apoptosis-associated speck-like protein containing a CARD
publication title Unified Polymerization Mechanism for the Assembly of ASC-Dependent Inflammasomes.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 91
sequence length 91
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O
ec nomenclature
pdb deposition date 2013-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3j63A00
2DBGA 2MS8A 1N3KA 4DWNA 3LQQA 3MOPA 2YGSA 2A9IA 2YVIA 4A2WA 3MOPG 2OF5H 1NGRA 1E41A 1D2ZA 3CL3A 1DGNA 2N1FA 2BBRA 2BBZA 4P4HI 4EWIA 2O71A 4M9SA 1CY5A 4O7QA 3YGSP 2F1SA 2D96A 1WMGA 4IZ5E 4A2QA 4N1KA 2DBDA 2MB9A 1YGOA 2DBHA 2IB1A 1E3YA 1ICHA 2LWDA 4O9LA 1DDFA 2B1WA 2OF5A 3T6PA 2KM6A 4NQKA 2YU0A 2YQFA 3MOPK 4JUPA 3J6JA 1C15A 2L9MA 2L6AA 2NAQA 4P4HA 2P1HA 4I16A 3QF2A 4E9MA 2KN6A 4F42A 4D8OA 2N7ZA 4IZAB 4QOBA 4RHWE 4O6XA 1A1WA 3LQRA 1UCPA 3EZQB 4N1LA 2M5VA 4O9FA 1CWWA 2HM2Q 1WH4A 4IZ7B 2N00A 2N97A 2A5YB 2N80A 3CRDA 2VGQA 2LS7A 3KATA 4M9ZA 2MN4A 4N1JA 2MPCA 2NSNA 1WXPA 3EZQA 4JQWA 1Z6TA 4M9XA 2MS7A 2GF5A 2DBFA 3J63A 4LWDA 2G7RA 1FADA 1A1ZA 2NZ7A 4UZ0A 2DO9A 4FH0A 4ZBWA 1PN5A 4F44A 2LWEA 4RHWA 1D2ZB 2N83A 3YGSC
chains in the Genus database with same CATH superfamily
2DBGA 2MS8A 1N3KA 4DWNA 3LQQA 3MOPA 2YGSA 2A9IA 2YVIA 4A2WA 3MOPG 2OF5H 1NGRA 1E41A 1D2ZA 3CL3A 1DGNA 2N1FA 2BBRA 2BBZA 4P4HI 4EWIA 2O71A 4M9SA 1CY5A 4O7QA 3YGSP 2F1SA 2D96A 1WMGA 4IZ5E 4A2QA 4N1KA 2DBDA 2MB9A 1YGOA 2DBHA 2IB1A 1E3YA 1ICHA 2LWDA 4O9LA 1DDFA 2B1WA 2OF5A 3T6PA 2KM6A 4NQKA 2YU0A 2YQFA 3MOPK 4JUPA 3J6JA 1C15A 2L9MA 2L6AA 2NAQA 4P4HA 2P1HA 4I16A 3QF2A 4E9MA 2KN6A 4F42A 4D8OA 2N7ZA 4IZAB 4QOBA 4RHWE 4O6XA 1A1WA 3LQRA 1UCPA 3EZQB 4N1LA 2M5VA 4O9FA 2MJMA 1CWWA 2HM2Q 1WH4A 4IZ7B 2N00A 2N97A 2A5YB 2N80A 3CRDA 2VGQA 2LS7A 3KATA 4M9ZA 2MN4A 4N1JA 2MPCA 2NSNA 1WXPA 3EZQA 4JQWA 1Z6TA 4M9XA 2MS7A 2GF5A 2DBFA 3J63A 4LWDA 2G7RA 1FADA 1A1ZA 2NZ7A 4UZ0A 2DO9A 4FH0A 4ZBWA 1PN5A 4F44A 2LWEA 4RHWA 2XV9A 1D2ZB 2N83A 3YGSC
chains in the Genus database with same CATH topology
2DBGA 2MS8A 1N3KA 4DWNA 3LQQA 3MOPA 2YGSA 2A9IA 2YVIA 4A2WA 3MOPG 2OF5H 1NGRA 1E41A 1D2ZA 3CL3A 1DGNA 2N1FA 2BBRA 2BBZA 4P4HI 4EWIA 2O71A 4M9SA 1CY5A 4O7QA 3YGSP 2F1SA 2D96A 1WMGA 4IZ5E 4A2QA 4N1KA 2DBDA 2MB9A 1YGOA 2DBHA 2IB1A 1E3YA 1ICHA 2LWDA 4O9LA 1DDFA 2B1WA 2OF5A 3T6PA 2KM6A 4NQKA 2YU0A 2YQFA 3MOPK 4JUPA 3J6JA 1C15A 2L9MA 2L6AA 2NAQA 4P4HA 2P1HA 4I16A 3QF2A 4E9MA 2KN6A 4F42A 4D8OA 2N7ZA 4IZAB 4QOBA 4RHWE 4O6XA 1A1WA 3LQRA 1UCPA 3EZQB 4N1LA 2M5VA 4O9FA 2MJMA 1CWWA 2HM2Q 1WH4A 4IZ7B 2N00A 2N97A 2A5YB 2N80A 3CRDA 2VGQA 2LS7A 3KATA 4M9ZA 2MN4A 4N1JA 2MPCA 2NSNA 1WXPA 3EZQA 4JQWA 1Z6TA 4M9XA 2MS7A 2GF5A 2DBFA 3J63A 4LWDA 2G7RA 1FADA 1A1ZA 2NZ7A 4UZ0A 2DO9A 4FH0A 4ZBWA 1PN5A 4F44A 2LWEA 4RHWA 2XV9A 1D2ZB 2N83A 3YGSC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DBG A;  2MS8 A;  1N3K A;  4DWN A;  3LQQ A;  3MOP A;  2YGS A;  2A9I A;  2YVI A;  4A2W A;  3MOP G;  2OF5 H;  1NGR A;  1E41 A;  1D2Z A;  3CL3 A;  1DGN A;  2N1F A;  2BBR A;  2BBZ A;  4P4H I;  4EWI A;  2O71 A;  4M9S A;  1CY5 A;  4O7Q A;  3YGS P;  2F1S A;  2D96 A;  1WMG A;  4IZ5 E;  4A2Q A;  4N1K A;  2DBD A;  2MB9 A;  1YGO A;  2DBH A;  2IB1 A;  1E3Y A;  1ICH A;  2LWD A;  4O9L A;  1DDF A;  2B1W A;  2OF5 A;  3T6P A;  2KM6 A;  4NQK A;  2YU0 A;  2YQF A;  3MOP K;  4JUP A;  3J6J A;  1C15 A;  2L9M A;  2L6A A;  2NAQ A;  4P4H A;  2P1H A;  4I16 A;  3QF2 A;  4E9M A;  2KN6 A;  4F42 A;  4D8O A;  2N7Z A;  4IZA B;  4QOB A;  4RHW E;  4O6X A;  1A1W A;  3LQR A;  1UCP A;  3EZQ B;  4N1L A;  2M5V A;  4O9F A;  1CWW A;  2HM2 Q;  1WH4 A;  4IZ7 B;  2N00 A;  2N97 A;  2A5Y B;  2N80 A;  3CRD A;  2VGQ A;  2LS7 A;  3KAT A;  4M9Z A;  2MN4 A;  4N1J A;  2MPC A;  2NSN A;  1WXP A;  3EZQ A;  4JQW A;  1Z6T A;  4M9X A;  2MS7 A;  2GF5 A;  2DBF A;  3J63 A;  4LWD A;  2G7R A;  1FAD A;  1A1Z A;  2NZ7 A;  4UZ0 A;  2DO9 A;  4FH0 A;  4ZBW A;  1PN5 A;  4F44 A;  2LWE A;  4RHW A;  1D2Z B;  2N83 A;  3YGS C; 
#chains in the Genus database with same CATH topology
 2DBG A;  2MS8 A;  1N3K A;  4DWN A;  3LQQ A;  3MOP A;  2YGS A;  2A9I A;  2YVI A;  4A2W A;  3MOP G;  2OF5 H;  1NGR A;  1E41 A;  1D2Z A;  3CL3 A;  1DGN A;  2N1F A;  2BBR A;  2BBZ A;  4P4H I;  4EWI A;  2O71 A;  4M9S A;  1CY5 A;  4O7Q A;  3YGS P;  2F1S A;  2D96 A;  1WMG A;  4IZ5 E;  4A2Q A;  4N1K A;  2DBD A;  2MB9 A;  1YGO A;  2DBH A;  2IB1 A;  1E3Y A;  1ICH A;  2LWD A;  4O9L A;  1DDF A;  2B1W A;  2OF5 A;  3T6P A;  2KM6 A;  4NQK A;  2YU0 A;  2YQF A;  3MOP K;  4JUP A;  3J6J A;  1C15 A;  2L9M A;  2L6A A;  2NAQ A;  4P4H A;  2P1H A;  4I16 A;  3QF2 A;  4E9M A;  2KN6 A;  4F42 A;  4D8O A;  2N7Z A;  4IZA B;  4QOB A;  4RHW E;  4O6X A;  1A1W A;  3LQR A;  1UCP A;  3EZQ B;  4N1L A;  2M5V A;  4O9F A;  2MJM A;  1CWW A;  2HM2 Q;  1WH4 A;  4IZ7 B;  2N00 A;  2N97 A;  2A5Y B;  2N80 A;  3CRD A;  2VGQ A;  2LS7 A;  3KAT A;  4M9Z A;  2MN4 A;  4N1J A;  2MPC A;  2NSN A;  1WXP A;  3EZQ A;  4JQW A;  1Z6T A;  4M9X A;  2MS7 A;  2GF5 A;  2DBF A;  3J63 A;  4LWD A;  2G7R A;  1FAD A;  1A1Z A;  2NZ7 A;  4UZ0 A;  2DO9 A;  4FH0 A;  4ZBW A;  1PN5 A;  4F44 A;  2LWE A;  4RHW A;  2XV9 A;  1D2Z B;  2N83 A;  3YGS C; 
#chains in the Genus database with same CATH homology
 2DBG A;  2MS8 A;  1N3K A;  4DWN A;  3LQQ A;  3MOP A;  2YGS A;  2A9I A;  2YVI A;  4A2W A;  3MOP G;  2OF5 H;  1NGR A;  1E41 A;  1D2Z A;  3CL3 A;  1DGN A;  2N1F A;  2BBR A;  2BBZ A;  4P4H I;  4EWI A;  2O71 A;  4M9S A;  1CY5 A;  4O7Q A;  3YGS P;  2F1S A;  2D96 A;  1WMG A;  4IZ5 E;  4A2Q A;  4N1K A;  2DBD A;  2MB9 A;  1YGO A;  2DBH A;  2IB1 A;  1E3Y A;  1ICH A;  2LWD A;  4O9L A;  1DDF A;  2B1W A;  2OF5 A;  3T6P A;  2KM6 A;  4NQK A;  2YU0 A;  2YQF A;  3MOP K;  4JUP A;  3J6J A;  1C15 A;  2L9M A;  2L6A A;  2NAQ A;  4P4H A;  2P1H A;  4I16 A;  3QF2 A;  4E9M A;  2KN6 A;  4F42 A;  4D8O A;  2N7Z A;  4IZA B;  4QOB A;  4RHW E;  4O6X A;  1A1W A;  3LQR A;  1UCP A;  3EZQ B;  4N1L A;  2M5V A;  4O9F A;  2MJM A;  1CWW A;  2HM2 Q;  1WH4 A;  4IZ7 B;  2N00 A;  2N97 A;  2A5Y B;  2N80 A;  3CRD A;  2VGQ A;  2LS7 A;  3KAT A;  4M9Z A;  2MN4 A;  4N1J A;  2MPC A;  2NSN A;  1WXP A;  3EZQ A;  4JQW A;  1Z6T A;  4M9X A;  2MS7 A;  2GF5 A;  2DBF A;  3J63 A;  4LWD A;  2G7R A;  1FAD A;  1A1Z A;  2NZ7 A;  4UZ0 A;  2DO9 A;  4FH0 A;  4ZBW A;  1PN5 A;  4F44 A;  2LWE A;  4RHW A;  2XV9 A;  1D2Z B;  2N83 A;  3YGS C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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