3J7AD

Cryo-em structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, small subunit
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
209
structure length
157
Chain Sequence
PISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRIRELTSLVQKRFFLCAMAQAESLRYKLLKGLAVRRACYGVLRHIMESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRSAQLKQGVLGIKVKIMLPTSILPDNISVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/inhibitor
molecule keywords 18S ribosomal RNA
publication title Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.
pubmed doi rcsb
total genus 36
structure length 157
sequence length 209
ec nomenclature
pdb deposition date 2014-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain
D PF07650 KH_2 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1140.32 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3, C-terminal domain 3j7aD01
4DR3C 3T1YC 1FJGC 4GKJC 1XNRC 1HR0C 2UUBC 4B3SC 1HNWC 2UU9C 4LFBC 4X66C 4LF7C 1XMOC 2HHHC 4JV5C 4B3MC 4LF4C 4DR5C 4JYAC 2ZM6C 5LMNC 1HNXC 2E5LC 5BR8C 4JI5C 4DR2C 4LF8C 4DV7C 4JI2C 1XNQC 5FLXD 4GKKC 5LMUC 3J80D 2UUAC 4YY3C 2F4VC 3J81D 3JAMD 5IWAC 4LFAC 4OX9C 4DV4C 4X62C 4DR6C 2UXBC 1I94C 4JI3C 3OTOC 4BSZA 1IBLC 4DUYC 4X64C 4DV1C 4DR7C 1IBKC 1HNZC 1IBMC 2UUCC 1J5EC 4AQYC 4LF6C 4LFCC 4DV3C 4JI6C 4LF9C 5IT9D 4DUZC 2VQFC 4YHHC 2VQEC 4DR1C 2UXDC 4B3TC 5A2QD 1N33C 4DV2C 4DV0C 4K0KC 2UXCC 4JI0C 4JI7C 1N36C 4JI8C 4JI1C 4DV5C 4DV6C 1N32C 4X65C 1N34C 4JI4C 3J7AD 4DR4C 4B3RC 4KHPC 3T1HC 4NXMC 1XMQC 4NXNC 4LF5C
chains in the Genus database with same CATH superfamily
4DR3C 3T1YC 1FJGC 4GKJC 1XNRC 1HR0C 2UUBC 4B3SC 1HNWC 2UU9C 2ZTBA 4LFBC 4X66C 4LF7C 1XMOC 2HHHC 4JV5C 4B3MC 4LF4C 4DR5C 4JYAC 2ZM6C 5LMNC 1HNXC 2E5LC 5BR8C 4JI5C 4DR2C 4LF8C 4DV7C 4JI2C 1XNQC 5FLXD 4GKKC 5LMUC 3J80D 2UUAC 4YY3C 2F4VC 3J81D 3JAMD 5IWAC 4LFAC 4OX9C 4DV4C 4X62C 4DR6C 2UXBC 1I94C 3FM7A 4JI3C 3OTOC 4BSZA 1IBLC 4DUYC 4X64C 4DV1C 4DR7C 1IBKC 1HNZC 2PG1E 1IBMC 2UUCC 1J5EC 4AQYC 4LF6C 4LFCC 4DV3C 4JI6C 4LF9C 5IT9D 4DUZC 2VQFC 4YHHC 2VQEC 4DR1C 2UXDC 4B3TC 5A2QD 1N33C 4DV2C 4DV0C 4K0KC 2UXCC 4JI0C 4JI7C 1N36C 4JI8C 4JI1C 1YGTA 4DV5C 4DV6C 1N32C 4X65C 1N34C 1XDXA 4JI4C 3J7AD 4DR4C 4B3RC 4KHPC 3T1HC 4NXMC 1XMQC 4NXNC 4LF5C
chains in the Genus database with same CATH topology
4DR3C 3T1YC 1FJGC 4GKJC 1XNRC 1HR0C 2UUBC 4B3SC 1HNWC 2UU9C 4LFBC 4X66C 4LF7C 1XMOC 2HHHC 4JV5C 4B3MC 4LF4C 4DR5C 4JYAC 2ZM6C 5LMNC 1HNXC 2E5LC 5BR8C 4JI5C 4DR2C 4LF8C 4DV7C 4JI2C 1XNQC 5FLXD 4GKKC 5LMUC 3J80D 2UUAC 4YY3C 2F4VC 3J81D 3JAMD 5IWAC 4LFAC 4OX9C 4DV4C 4X62C 4DR6C 2UXBC 1I94C 4JI3C 3OTOC 4BSZA 1IBLC 4DUYC 4X64C 4DV1C 4DR7C 1IBKC 1HNZC 1IBMC 2UUCC 1J5EC 4AQYC 4LF6C 4LFCC 4DV3C 4JI6C 4LF9C 5IT9D 4DUZC 2VQFC 4YHHC 2VQEC 4DR1C 2UXDC 4B3TC 5A2QD 1N33C 4DV2C 4DV0C 4K0KC 2UXCC 4JI0C 4JI7C 1N36C 4JI8C 4JI1C 4DV5C 4DV6C 1N32C 4X65C 1N34C 4JI4C 3J7AD 4DR4C 4B3RC 4KHPC 3T1HC 4NXMC 1XMQC 4NXNC 4LF5C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR3 C;  3T1Y C;  1FJG C;  4GKJ C;  1XNR C;  1HR0 C;  2UUB C;  4B3S C;  1HNW C;  2UU9 C;  4LFB C;  4X66 C;  4LF7 C;  1XMO C;  2HHH C;  4JV5 C;  4B3M C;  4LF4 C;  4DR5 C;  4JYA C;  2ZM6 C;  5LMN C;  1HNX C;  2E5L C;  5BR8 C;  4JI5 C;  4DR2 C;  4LF8 C;  4DV7 C;  4JI2 C;  1XNQ C;  5FLX D;  4GKK C;  5LMU C;  3J80 D;  2UUA C;  4YY3 C;  2F4V C;  3J81 D;  3JAM D;  5IWA C;  4LFA C;  4OX9 C;  4DV4 C;  4X62 C;  4DR6 C;  2UXB C;  1I94 C;  4JI3 C;  3OTO C;  4BSZ A;  1IBL C;  4DUY C;  4X64 C;  4DV1 C;  4DR7 C;  1IBK C;  1HNZ C;  1IBM C;  2UUC C;  1J5E C;  4AQY C;  4LF6 C;  4LFC C;  4DV3 C;  4JI6 C;  4LF9 C;  5IT9 D;  4DUZ C;  2VQF C;  4YHH C;  2VQE C;  4DR1 C;  2UXD C;  4B3T C;  5A2Q D;  1N33 C;  4DV2 C;  4DV0 C;  4K0K C;  2UXC C;  4JI0 C;  4JI7 C;  1N36 C;  4JI8 C;  4JI1 C;  4DV5 C;  4DV6 C;  1N32 C;  4X65 C;  1N34 C;  4JI4 C;  3J7A D;  4DR4 C;  4B3R C;  4KHP C;  3T1H C;  4NXM C;  1XMQ C;  4NXN C;  4LF5 C; 
#chains in the Genus database with same CATH topology
 4DR3 C;  3T1Y C;  1FJG C;  4GKJ C;  1XNR C;  1HR0 C;  2UUB C;  4B3S C;  1HNW C;  2UU9 C;  2ZTB A;  4LFB C;  4X66 C;  4LF7 C;  1XMO C;  2HHH C;  4JV5 C;  4B3M C;  4LF4 C;  4DR5 C;  4JYA C;  2ZM6 C;  5LMN C;  1HNX C;  2E5L C;  5BR8 C;  4JI5 C;  4DR2 C;  4LF8 C;  4DV7 C;  4JI2 C;  1XNQ C;  5FLX D;  4GKK C;  5LMU C;  3J80 D;  2UUA C;  4YY3 C;  2F4V C;  3J81 D;  3JAM D;  5IWA C;  4LFA C;  4OX9 C;  4DV4 C;  4X62 C;  4DR6 C;  2UXB C;  1I94 C;  3FM7 A;  4JI3 C;  3OTO C;  4BSZ A;  1IBL C;  4DUY C;  4X64 C;  4DV1 C;  4DR7 C;  1IBK C;  1HNZ C;  2PG1 E;  1IBM C;  2UUC C;  1J5E C;  4AQY C;  4LF6 C;  4LFC C;  4DV3 C;  4JI6 C;  4LF9 C;  5IT9 D;  4DUZ C;  2VQF C;  4YHH C;  2VQE C;  4DR1 C;  2UXD C;  4B3T C;  5A2Q D;  1N33 C;  4DV2 C;  4DV0 C;  4K0K C;  2UXC C;  4JI0 C;  4JI7 C;  1N36 C;  4JI8 C;  4JI1 C;  1YGT A;  4DV5 C;  4DV6 C;  1N32 C;  4X65 C;  1N34 C;  1XDX A;  4JI4 C;  3J7A D;  4DR4 C;  4B3R C;  4KHP C;  3T1H C;  4NXM C;  1XMQ C;  4NXN C;  4LF5 C; 
#chains in the Genus database with same CATH homology
 4DR3 C;  3T1Y C;  1FJG C;  4GKJ C;  1XNR C;  1HR0 C;  2UUB C;  4B3S C;  1HNW C;  2UU9 C;  4LFB C;  4X66 C;  4LF7 C;  1XMO C;  2HHH C;  4JV5 C;  4B3M C;  4LF4 C;  4DR5 C;  4JYA C;  2ZM6 C;  5LMN C;  1HNX C;  2E5L C;  5BR8 C;  4JI5 C;  4DR2 C;  4LF8 C;  4DV7 C;  4JI2 C;  1XNQ C;  5FLX D;  4GKK C;  5LMU C;  3J80 D;  2UUA C;  4YY3 C;  2F4V C;  3J81 D;  3JAM D;  5IWA C;  4LFA C;  4OX9 C;  4DV4 C;  4X62 C;  4DR6 C;  2UXB C;  1I94 C;  4JI3 C;  3OTO C;  4BSZ A;  1IBL C;  4DUY C;  4X64 C;  4DV1 C;  4DR7 C;  1IBK C;  1HNZ C;  1IBM C;  2UUC C;  1J5E C;  4AQY C;  4LF6 C;  4LFC C;  4DV3 C;  4JI6 C;  4LF9 C;  5IT9 D;  4DUZ C;  2VQF C;  4YHH C;  2VQE C;  4DR1 C;  2UXD C;  4B3T C;  5A2Q D;  1N33 C;  4DV2 C;  4DV0 C;  4K0K C;  2UXC C;  4JI0 C;  4JI7 C;  1N36 C;  4JI8 C;  4JI1 C;  4DV5 C;  4DV6 C;  1N32 C;  4X65 C;  1N34 C;  4JI4 C;  3J7A D;  4DR4 C;  4B3R C;  4KHP C;  3T1H C;  4NXM C;  1XMQ C;  4NXN C;  4LF5 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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