3J7YL

Structure of the large ribosomal subunit from human mitochondria
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
115
structure length
115
Chain Sequence
AIQKMTRVRVVDNSALGNSPYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S rRNA
publication title Structure of the large ribosomal subunit from human mitochondria.
pubmed doi rcsb
total genus 18
structure length 115
sequence length 115
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 3j7yL00
3CD6K 4IOAH 1VQ5K 2OTLK 5GADL 1Q82L 1VQ4K 4WFAH 3CC7K 3CC2K 1Q81L 3CCSK 3J7YL 1YJ9K 3CCVK 3CF5H 1K73L 1VQKK 2QA4K 1Q7YL 5JVHH 3DLLH 1VQ8K 4UY8K 4WFBH 1QVGJ 5GAEL 5AN9E 3I56K 3CPWJ 1VQLK 3G71K 3CMAK 4IOCH 5MLCM 1YIJK 1Q86L 1VQPK 3CC4K 4V19O 1YITK 3CCJK 3CCRK 5HL7H 4WF9H 1YI2K 1YJWK 1M90L 3I55K 1VQNK 3CCQK 1JJ2J 3G4SK 4WFNH 1WHIA 3J7ZK 5DM7H 3PIOH 1VQOK 3CXCJ 1K9ML 3CCLK 5GAHL 1KQSJ 1VQ6K 2OTJK 1N8RL 3CCMK 1KD1L 1KC8L 4WCEH 1M1KL 5DM6H 1K8AL 2ZJQH 1VQMK 1VQ9K 1VQ7K 1QVFJ 2ZJPH 1W2BJ 2QEXK 1NJIL 5H1SM 1S72K 3G6EK 3OW2J 1YHQK 4U67H 3PIPH 5JVGH 3CMEK 5GAGL 3CCUK 1YJNK 3CCEK 2ZJRH 4IO9H
chains in the Genus database with same CATH superfamily
3CD6K 4IOAH 1VQ5K 2OTLK 5GADL 1Q82L 1VQ4K 4WFAH 3CC7K 3CC2K 1Q81L 3CCSK 3J7YL 1YJ9K 3CCVK 3CF5H 1K73L 1VQKK 2QA4K 1Q7YL 5JVHH 3DLLH 1VQ8K 4UY8K 4WFBH 1QVGJ 5GAEL 5AN9E 3I56K 3CPWJ 1VQLK 3G71K 3CMAK 4IOCH 5MLCM 1YIJK 1Q86L 1VQPK 3CC4K 4V19O 1YITK 3CCJK 3CCRK 5HL7H 4WF9H 1YI2K 1YJWK 1M90L 3I55K 1VQNK 3CCQK 1JJ2J 3G4SK 4WFNH 1WHIA 3J7ZK 5DM7H 3PIOH 1VQOK 3CXCJ 1K9ML 3CCLK 5GAHL 1KQSJ 1VQ6K 2OTJK 1N8RL 3CCMK 1KD1L 1KC8L 4WCEH 1M1KL 5DM6H 1K8AL 2ZJQH 1VQMK 1VQ9K 1VQ7K 1QVFJ 2ZJPH 1W2BJ 2QEXK 1NJIL 5H1SM 1S72K 3G6EK 3OW2J 1YHQK 4U67H 3PIPH 5JVGH 3CMEK 5GAGL 3CCUK 1YJNK 3CCEK 2ZJRH 4IO9H
chains in the Genus database with same CATH topology
3CD6K 4IOAH 1VQ5K 2OTLK 5GADL 1Q82L 1VQ4K 4WFAH 3CC7K 3CC2K 1Q81L 3CCSK 3J7YL 1YJ9K 3CCVK 3CF5H 1K73L 1VQKK 2QA4K 1Q7YL 5JVHH 3DLLH 1VQ8K 4UY8K 4WFBH 1QVGJ 5GAEL 5AN9E 3I56K 3CPWJ 1VQLK 3G71K 3CMAK 4IOCH 5MLCM 1YIJK 1Q86L 1VQPK 3CC4K 4V19O 1YITK 3CCJK 3CCRK 5HL7H 4WF9H 1YI2K 1YJWK 1M90L 3I55K 1VQNK 3CCQK 1JJ2J 3G4SK 4WFNH 1WHIA 3J7ZK 5DM7H 3PIOH 1VQOK 3CXCJ 1K9ML 3CCLK 5GAHL 1KQSJ 1VQ6K 2OTJK 1N8RL 3CCMK 1KD1L 1KC8L 4WCEH 1M1KL 5DM6H 1K8AL 2ZJQH 1VQMK 1VQ9K 1VQ7K 1QVFJ 2ZJPH 1W2BJ 2QEXK 1NJIL 5H1SM 1S72K 3G6EK 3OW2J 1YHQK 4U67H 3PIPH 5JVGH 3CMEK 5GAGL 3CCUK 1YJNK 3CCEK 2ZJRH 4IO9H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CD6 K;  4IOA H;  1VQ5 K;  2OTL K;  5GAD L;  1Q82 L;  1VQ4 K;  4WFA H;  3CC7 K;  3CC2 K;  1Q81 L;  3CCS K;  3J7Y L;  1YJ9 K;  3CCV K;  3CF5 H;  1K73 L;  1VQK K;  2QA4 K;  1Q7Y L;  5JVH H;  3DLL H;  1VQ8 K;  4UY8 K;  4WFB H;  1QVG J;  5GAE L;  5AN9 E;  3I56 K;  3CPW J;  1VQL K;  3G71 K;  3CMA K;  4IOC H;  5MLC M;  1YIJ K;  1Q86 L;  1VQP K;  3CC4 K;  4V19 O;  1YIT K;  3CCJ K;  3CCR K;  5HL7 H;  4WF9 H;  1YI2 K;  1YJW K;  1M90 L;  3I55 K;  1VQN K;  3CCQ K;  1JJ2 J;  3G4S K;  4WFN H;  1WHI A;  3J7Z K;  5DM7 H;  3PIO H;  1VQO K;  3CXC J;  1K9M L;  3CCL K;  5GAH L;  1KQS J;  1VQ6 K;  2OTJ K;  1N8R L;  3CCM K;  1KD1 L;  1KC8 L;  4WCE H;  1M1K L;  5DM6 H;  1K8A L;  2ZJQ H;  1VQM K;  1VQ9 K;  1VQ7 K;  1QVF J;  2ZJP H;  1W2B J;  2QEX K;  1NJI L;  5H1S M;  1S72 K;  3G6E K;  3OW2 J;  1YHQ K;  4U67 H;  3PIP H;  5JVG H;  3CME K;  5GAG L;  3CCU K;  1YJN K;  3CCE K;  2ZJR H;  4IO9 H; 
#chains in the Genus database with same CATH topology
 3CD6 K;  4IOA H;  1VQ5 K;  2OTL K;  5GAD L;  1Q82 L;  1VQ4 K;  4WFA H;  3CC7 K;  3CC2 K;  1Q81 L;  3CCS K;  3J7Y L;  1YJ9 K;  3CCV K;  3CF5 H;  1K73 L;  1VQK K;  2QA4 K;  1Q7Y L;  5JVH H;  3DLL H;  1VQ8 K;  4UY8 K;  4WFB H;  1QVG J;  5GAE L;  5AN9 E;  3I56 K;  3CPW J;  1VQL K;  3G71 K;  3CMA K;  4IOC H;  5MLC M;  1YIJ K;  1Q86 L;  1VQP K;  3CC4 K;  4V19 O;  1YIT K;  3CCJ K;  3CCR K;  5HL7 H;  4WF9 H;  1YI2 K;  1YJW K;  1M90 L;  3I55 K;  1VQN K;  3CCQ K;  1JJ2 J;  3G4S K;  4WFN H;  1WHI A;  3J7Z K;  5DM7 H;  3PIO H;  1VQO K;  3CXC J;  1K9M L;  3CCL K;  5GAH L;  1KQS J;  1VQ6 K;  2OTJ K;  1N8R L;  3CCM K;  1KD1 L;  1KC8 L;  4WCE H;  1M1K L;  5DM6 H;  1K8A L;  2ZJQ H;  1VQM K;  1VQ9 K;  1VQ7 K;  1QVF J;  2ZJP H;  1W2B J;  2QEX K;  1NJI L;  5H1S M;  1S72 K;  3G6E K;  3OW2 J;  1YHQ K;  4U67 H;  3PIP H;  5JVG H;  3CME K;  5GAG L;  3CCU K;  1YJN K;  3CCE K;  2ZJR H;  4IO9 H; 
#chains in the Genus database with same CATH homology
 3CD6 K;  4IOA H;  1VQ5 K;  2OTL K;  5GAD L;  1Q82 L;  1VQ4 K;  4WFA H;  3CC7 K;  3CC2 K;  1Q81 L;  3CCS K;  3J7Y L;  1YJ9 K;  3CCV K;  3CF5 H;  1K73 L;  1VQK K;  2QA4 K;  1Q7Y L;  5JVH H;  3DLL H;  1VQ8 K;  4UY8 K;  4WFB H;  1QVG J;  5GAE L;  5AN9 E;  3I56 K;  3CPW J;  1VQL K;  3G71 K;  3CMA K;  4IOC H;  5MLC M;  1YIJ K;  1Q86 L;  1VQP K;  3CC4 K;  4V19 O;  1YIT K;  3CCJ K;  3CCR K;  5HL7 H;  4WF9 H;  1YI2 K;  1YJW K;  1M90 L;  3I55 K;  1VQN K;  3CCQ K;  1JJ2 J;  3G4S K;  4WFN H;  1WHI A;  3J7Z K;  5DM7 H;  3PIO H;  1VQO K;  3CXC J;  1K9M L;  3CCL K;  5GAH L;  1KQS J;  1VQ6 K;  2OTJ K;  1N8R L;  3CCM K;  1KD1 L;  1KC8 L;  4WCE H;  1M1K L;  5DM6 H;  1K8A L;  2ZJQ H;  1VQM K;  1VQ9 K;  1VQ7 K;  1QVF J;  2ZJP H;  1W2B J;  2QEX K;  1NJI L;  5H1S M;  1S72 K;  3G6E K;  3OW2 J;  1YHQ K;  4U67 H;  3PIP H;  5JVG H;  3CME K;  5GAG L;  3CCU K;  1YJN K;  3CCE K;  2ZJR H;  4IO9 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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