3J7YT

Structure of the large ribosomal subunit from human mitochondria
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
166
structure length
166
Chain Sequence
ISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSRTIVHTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S rRNA
publication title Structure of the large ribosomal subunit from human mitochondria.
pubmed doi rcsb
total genus 38
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3j7yT00
3CCJR 1Q82S 4WFNP 1K73S 4WF9P 3CMER 1NJIS 1KQSQ 1YJ9R 3CC4R 3CF5P 1K8AS 1VQ8R 3CCER 4WFBP 5HL7P 5DM6P 1VQ4R 1VQOR 1QVGQ 4WFAP 5JVGP 3CMAR 1VQ5R 1VQNR 1YJWR 1JJ2Q 1YJNR 1M1KS 4UY8S 4V19W 3CCLR 1YITR 3J7YT 3CXCQ 3CCRR 1KD1S 2ZJRP 4IOAP 3G4SR 1QVFQ 2ZJPP 3CCQR 3G6ER 3I55R 3I56R 1M90S 3CCMR 1VQ9R 5GAET 4U67P 5JVHP 1Q86S 4IOCP 1YHQR 1N8RS 1K9MS 3OW2Q 3PIOP 3CCUR 3CC7R 1VQ6R 3CCSR 2OTJR 3J7ZS 1VQLR 1BXEA 2OTLR 5DM7P 5GADT 3G71R 2QEXR 3CD6R 3CCVR 4WCEP 3PIPP 3DLLP 3CPWQ 1YI2R 1YIJR 5H1SU 1VQ7R 5MLCU 1W2BQ 1Q81S 1Q7YS 1VQPR 5GAHT 1S72R 2QA4R 2ZJQP 4IO9P 3CC2R 1KC8S 1VQKR 1I4JA 1VQMR 5GAGT
chains in the Genus database with same CATH superfamily
3CCJR 1Q82S 4WFNP 1K73S 3NE9A 4WF9P 3QMNA 3CMER 1NJIS 1KQSQ 1YJ9R 3CC4R 3CF5P 3H7QA 1K8AS 4MRTA 1VQ8R 3CCER 4WFBP 4DXEA 5HL7P 5DM6P 1VQ4R 1VQOR 1QVGQ 1FTFA 1F7LA 4WFAP 2CG5A 5JVGP 3CMAR 1VQ5R 1VQNR 5CXDA 1YJWR 1JJ2Q 1YJNR 1M1KS 4UY8S 4V19W 3NFDA 3CCLR 1YITR 3J7YT 3CXCQ 3CCRR 1KD1S 2ZJRP 4IOAP 3G4SR 1QVFQ 2ZJPP 3CCQR 3G6ER 3I55R 3I56R 2C43A 1M90S 3CCMR 2JBZA 1VQ9R 5GAET 4U67P 2WATA 3NE1A 5JVHP 2D0PA 1Q86S 4IOCP 1YHQR 1N8RS 5CMOA 4HC6A 2D0OA 2WDYA 3OW2Q 1K9MS 3PIOP 3CCUR 3CC7R 1VQ6R 1NBWA 3CCSR 2OTJR 3HQJA 3J7ZS 1VQLR 1BXEA 2WASA 1FTEA 2OTLR 5DM7P 2JCAA 5GADT 3G71R 2QEXR 1QR0A 3CD6R 3CCVR 2BDDA 2WDSA 3HYKA 4WCEP 3PIPP 3DLLP 3CPWQ 1FTHA 1YI2R 1YIJR 2WDOA 5H1SU 3GWMA 1F7TA 1VQ7R 5MLCU 1W2BQ 1Q81S 1Q7YS 1VQPR 4JM7A 1F80A 5GAHT 1S72R 2QA4R 2QG8A 2ZJQP 4IO9P 3CC2R 3NE3B 1KC8S 2BYDA 2WASB 1VQKR 1I4JA 1VQMR 5GAGT
chains in the Genus database with same CATH topology
3CCJR 1Q82S 4WFNP 1K73S 4WF9P 3CMER 1NJIS 1KQSQ 1YJ9R 3CC4R 3CF5P 1K8AS 1VQ8R 3CCER 4WFBP 5HL7P 5DM6P 1VQ4R 1VQOR 1QVGQ 4WFAP 5JVGP 3CMAR 1VQ5R 1VQNR 1YJWR 1JJ2Q 1YJNR 1M1KS 4UY8S 4V19W 3CCLR 1YITR 3J7YT 3CXCQ 3CCRR 1KD1S 2ZJRP 4IOAP 3G4SR 1QVFQ 2ZJPP 3CCQR 3G6ER 3I55R 3I56R 1M90S 3CCMR 1VQ9R 5GAET 4U67P 5JVHP 1Q86S 4IOCP 1YHQR 1N8RS 1K9MS 3OW2Q 3PIOP 3CCUR 3CC7R 1VQ6R 3CCSR 2OTJR 3J7ZS 1VQLR 1BXEA 2OTLR 5DM7P 5GADT 3G71R 2QEXR 3CD6R 3CCVR 4WCEP 3PIPP 3DLLP 3CPWQ 1YI2R 1YIJR 5H1SU 1VQ7R 5MLCU 1W2BQ 1Q81S 1Q7YS 1VQPR 5GAHT 1S72R 2QA4R 2ZJQP 4IO9P 3CC2R 1KC8S 1VQKR 1I4JA 1VQMR 5GAGT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCJ R;  1Q82 S;  4WFN P;  1K73 S;  4WF9 P;  3CME R;  1NJI S;  1KQS Q;  1YJ9 R;  3CC4 R;  3CF5 P;  1K8A S;  1VQ8 R;  3CCE R;  4WFB P;  5HL7 P;  5DM6 P;  1VQ4 R;  1VQO R;  1QVG Q;  4WFA P;  5JVG P;  3CMA R;  1VQ5 R;  1VQN R;  1YJW R;  1JJ2 Q;  1YJN R;  1M1K S;  4UY8 S;  4V19 W;  3CCL R;  1YIT R;  3J7Y T;  3CXC Q;  3CCR R;  1KD1 S;  2ZJR P;  4IOA P;  3G4S R;  1QVF Q;  2ZJP P;  3CCQ R;  3G6E R;  3I55 R;  3I56 R;  1M90 S;  3CCM R;  1VQ9 R;  5GAE T;  4U67 P;  5JVH P;  1Q86 S;  4IOC P;  1YHQ R;  1N8R S;  1K9M S;  3OW2 Q;  3PIO P;  3CCU R;  3CC7 R;  1VQ6 R;  3CCS R;  2OTJ R;  3J7Z S;  1VQL R;  1BXE A;  2OTL R;  5DM7 P;  5GAD T;  3G71 R;  2QEX R;  3CD6 R;  3CCV R;  4WCE P;  3PIP P;  3DLL P;  3CPW Q;  1YI2 R;  1YIJ R;  5H1S U;  1VQ7 R;  5MLC U;  1W2B Q;  1Q81 S;  1Q7Y S;  1VQP R;  5GAH T;  1S72 R;  2QA4 R;  2ZJQ P;  4IO9 P;  3CC2 R;  1KC8 S;  1VQK R;  1I4J A;  1VQM R;  5GAG T; 
#chains in the Genus database with same CATH topology
 3CCJ R;  1Q82 S;  4WFN P;  1K73 S;  3NE9 A;  4WF9 P;  3QMN A;  3CME R;  1NJI S;  1KQS Q;  1YJ9 R;  3CC4 R;  3CF5 P;  3H7Q A;  1K8A S;  4MRT A;  1VQ8 R;  3CCE R;  4WFB P;  4DXE A;  5HL7 P;  5DM6 P;  1VQ4 R;  1VQO R;  1QVG Q;  1FTF A;  1F7L A;  4WFA P;  2CG5 A;  5JVG P;  3CMA R;  1VQ5 R;  1VQN R;  5CXD A;  1YJW R;  1JJ2 Q;  1YJN R;  1M1K S;  4UY8 S;  4V19 W;  3NFD A;  3CCL R;  1YIT R;  3J7Y T;  3CXC Q;  3CCR R;  1KD1 S;  2ZJR P;  4IOA P;  3G4S R;  1QVF Q;  2ZJP P;  3CCQ R;  3G6E R;  3I55 R;  3I56 R;  2C43 A;  1M90 S;  3CCM R;  2JBZ A;  1VQ9 R;  5GAE T;  4U67 P;  2WAT A;  3NE1 A;  5JVH P;  2D0P A;  1Q86 S;  4IOC P;  1YHQ R;  1N8R S;  5CMO A;  4HC6 A;  2D0O A;  2WDY A;  3OW2 Q;  1K9M S;  3PIO P;  3CCU R;  3CC7 R;  1VQ6 R;  1NBW A;  3CCS R;  2OTJ R;  3HQJ A;  3J7Z S;  1VQL R;  1BXE A;  2WAS A;  1FTE A;  2OTL R;  5DM7 P;  2JCA A;  5GAD T;  3G71 R;  2QEX R;  1QR0 A;  3CD6 R;  3CCV R;  2BDD A;  2WDS A;  3HYK A;  4WCE P;  3PIP P;  3DLL P;  3CPW Q;  1FTH A;  1YI2 R;  1YIJ R;  2WDO A;  5H1S U;  3GWM A;  1F7T A;  1VQ7 R;  5MLC U;  1W2B Q;  1Q81 S;  1Q7Y S;  1VQP R;  4JM7 A;  1F80 A;  5GAH T;  1S72 R;  2QA4 R;  2QG8 A;  2ZJQ P;  4IO9 P;  3CC2 R;  3NE3 B;  1KC8 S;  2BYD A;  2WAS B;  1VQK R;  1I4J A;  1VQM R;  5GAG T; 
#chains in the Genus database with same CATH homology
 3CCJ R;  1Q82 S;  4WFN P;  1K73 S;  4WF9 P;  3CME R;  1NJI S;  1KQS Q;  1YJ9 R;  3CC4 R;  3CF5 P;  1K8A S;  1VQ8 R;  3CCE R;  4WFB P;  5HL7 P;  5DM6 P;  1VQ4 R;  1VQO R;  1QVG Q;  4WFA P;  5JVG P;  3CMA R;  1VQ5 R;  1VQN R;  1YJW R;  1JJ2 Q;  1YJN R;  1M1K S;  4UY8 S;  4V19 W;  3CCL R;  1YIT R;  3J7Y T;  3CXC Q;  3CCR R;  1KD1 S;  2ZJR P;  4IOA P;  3G4S R;  1QVF Q;  2ZJP P;  3CCQ R;  3G6E R;  3I55 R;  3I56 R;  1M90 S;  3CCM R;  1VQ9 R;  5GAE T;  4U67 P;  5JVH P;  1Q86 S;  4IOC P;  1YHQ R;  1N8R S;  1K9M S;  3OW2 Q;  3PIO P;  3CCU R;  3CC7 R;  1VQ6 R;  3CCS R;  2OTJ R;  3J7Z S;  1VQL R;  1BXE A;  2OTL R;  5DM7 P;  5GAD T;  3G71 R;  2QEX R;  3CD6 R;  3CCV R;  4WCE P;  3PIP P;  3DLL P;  3CPW Q;  1YI2 R;  1YIJ R;  5H1S U;  1VQ7 R;  5MLC U;  1W2B Q;  1Q81 S;  1Q7Y S;  1VQP R;  5GAH T;  1S72 R;  2QA4 R;  2ZJQ P;  4IO9 P;  3CC2 R;  1KC8 S;  1VQK R;  1I4J A;  1VQM R;  5GAG T; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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