3J7ZG

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
176
structure length
176
Chain Sequence
b'SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
total genus 30
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3j7zG02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3j7zG01
1QVFE 1QVGE 1K8AG 3G6EE 5GADG 3CMEE 2QA4E 1VQ4E 2ZJQE 1VQ6E 3CCEE 5JVGE 3I56E 4WFAE 3CCJE 3CC4E 3OW2E 1JJ2E 3DLLE 5HL7E 2ZJRE 1Q81G 4WFNE 3CC7E 1KC8G 1VQOE 5JVHE 3PIOE 5DM6E 3CF5E 4WCEE 1VQKE 3J7ZG 4UY8G 3CCSE 5GAHG 1K9MG 3I55E 1VQ5E 2OTLE 1VQNE 4WF9E 3G4SE 1N8RG 5MLCH 3CPWE 3CD6E 3G71E 1K73G 1NJIG 1YIJE 1W2BE 1Q7YG 3CMAE 5GAEG 1Q86G 5H1SI 1Q82G 4IOAE 3CCLE 1RL6A 1VQ8E 1YITE 4WFBE 5DM7E 1M1KG 1KQSE 1YJNE 1VQ9E 1M90G 3CCQE 2OTJE 3CCRE 5GAGG 2QEXE 3CC2E 4U67E 1KD1G 1YI2E 2ZJPE 4IOCE 1YJWE 1VQME 1VQLE 1YJ9E 3CCVE 3PIPE 3CCME 1VQ7E 1VQPE 1S72E 5AN9B 3CXCE 1YHQE 2CQLA 4IO9E 3CCUE
chains in the Genus database with same CATH superfamily
1QVFE 1QVGE 1K8AG 2FKJA 2OL7A 3G6EE 5B11O 5GADG 3CMEE 2QA4E 1VQ4E 2ZJQE 1VQ6E 3IGEA 3CCEE 5JVGE 3I56E 1P4PA 4WFAE 3CCJE 3CC4E 3IG9A 3OW2E 2OY1O 1JJ2E 1FJ1E 2HKDA 3CKGA 3DLLE 2ZJRE 5HL7E 3AUMO 4WFNE 1Q81G 3CC7E 1KC8G 1VQOE 2OY5O 5JVHE 3PIOE 5DM6E 3CF5E 4WCEE 1VQKE 2FKGA 3J7ZG 4UY8G 3CCSE 5GAHG 1K9MG 2G8CO 3I55E 1VQ5E 2OTLE 1VQNE 4WF9E 3G4SE 1N8RG 5MLCH 3CPWE 3EC5A 3CD6E 3G71E 1K73G 1NJIG 2OL8O 3CKFA 2OY7A 1YIJE 1W2BE 1Q7YG 3CMAE 5GAEG 1Q86G 5H1SI 1Q82G 4IOAE 2I5ZO 2I5VO 1OSPO 3CCLE 1RL6A 2OY8A 1VQ8E 1YITE 4WFBE 5DM7E 1M1KG 1KQSE 1YJNE 2AF5A 5B2AO 1VQ9E 1M90G 3CCQE 2OTJE 3CCRE 5GAGG 2QEXE 3CC2E 4U67E 1KD1G 1RJLC 1YI2E 2ZJPE 4IOCE 2OYBO 1YJWE 1VQME 1VQLE 2OL6O 1YJ9E 2PI3O 3CCVE 3PIPE 5B3MO 3CCME 1VQ7E 1VQPE 1S72E 5AN9B 5B10O 3CXCE 1YHQE 2CQLA 4IO9E 3CCUE
chains in the Genus database with same CATH topology
1QVFE 1QVGE 1K8AG 3G6EE 5GADG 3CMEE 2QA4E 1VQ4E 2ZJQE 1VQ6E 3CCEE 5JVGE 3I56E 4WFAE 3CCJE 3CC4E 3OW2E 1JJ2E 3DLLE 5HL7E 2ZJRE 1Q81G 4WFNE 3CC7E 1KC8G 1VQOE 5JVHE 3PIOE 5DM6E 3CF5E 4WCEE 1VQKE 3J7ZG 4UY8G 3CCSE 5GAHG 1K9MG 3I55E 1VQ5E 2OTLE 1VQNE 4WF9E 3G4SE 1N8RG 5MLCH 3CPWE 3CD6E 3G71E 1K73G 1NJIG 1YIJE 1W2BE 1Q7YG 3CMAE 5GAEG 1Q86G 5H1SI 1Q82G 4IOAE 3CCLE 1RL6A 1VQ8E 1YITE 4WFBE 5DM7E 1M1KG 1KQSE 1YJNE 1VQ9E 1M90G 3CCQE 2OTJE 3CCRE 5GAGG 2QEXE 3CC2E 4U67E 1KD1G 1YI2E 2ZJPE 4IOCE 1YJWE 1VQME 1VQLE 1YJ9E 3CCVE 3PIPE 3CCME 1VQ7E 1VQPE 1S72E 5AN9B 3CXCE 1YHQE 2CQLA 4IO9E 3CCUE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QVF E;  1QVG E;  1K8A G;  3G6E E;  5GAD G;  3CME E;  2QA4 E;  1VQ4 E;  2ZJQ E;  1VQ6 E;  3CCE E;  5JVG E;  3I56 E;  4WFA E;  3CCJ E;  3CC4 E;  3OW2 E;  1JJ2 E;  3DLL E;  5HL7 E;  2ZJR E;  1Q81 G;  4WFN E;  3CC7 E;  1KC8 G;  1VQO E;  5JVH E;  3PIO E;  5DM6 E;  3CF5 E;  4WCE E;  1VQK E;  3J7Z G;  4UY8 G;  3CCS E;  5GAH G;  1K9M G;  3I55 E;  1VQ5 E;  2OTL E;  1VQN E;  4WF9 E;  3G4S E;  1N8R G;  5MLC H;  3CPW E;  3CD6 E;  3G71 E;  1K73 G;  1NJI G;  1YIJ E;  1W2B E;  1Q7Y G;  3CMA E;  5GAE G;  1Q86 G;  5H1S I;  1Q82 G;  4IOA E;  3CCL E;  1RL6 A;  1VQ8 E;  1YIT E;  4WFB E;  5DM7 E;  1M1K G;  1KQS E;  1YJN E;  1VQ9 E;  1M90 G;  3CCQ E;  2OTJ E;  3CCR E;  5GAG G;  2QEX E;  3CC2 E;  4U67 E;  1KD1 G;  1YI2 E;  2ZJP E;  4IOC E;  1YJW E;  1VQM E;  1VQL E;  1YJ9 E;  3CCV E;  3PIP E;  3CCM E;  1VQ7 E;  1VQP E;  1S72 E;  5AN9 B;  3CXC E;  1YHQ E;  2CQL A;  4IO9 E;  3CCU E; 
#chains in the Genus database with same CATH topology
 1QVF E;  1QVG E;  1K8A G;  2FKJ A;  2OL7 A;  3G6E E;  5B11 O;  5GAD G;  3CME E;  2QA4 E;  1VQ4 E;  2ZJQ E;  1VQ6 E;  3IGE A;  3CCE E;  5JVG E;  3I56 E;  1P4P A;  4WFA E;  3CCJ E;  3CC4 E;  3IG9 A;  3OW2 E;  2OY1 O;  1JJ2 E;  1FJ1 E;  2HKD A;  3CKG A;  3DLL E;  2ZJR E;  5HL7 E;  3AUM O;  4WFN E;  1Q81 G;  3CC7 E;  1KC8 G;  1VQO E;  2OY5 O;  5JVH E;  3PIO E;  5DM6 E;  3CF5 E;  4WCE E;  1VQK E;  2FKG A;  3J7Z G;  4UY8 G;  3CCS E;  5GAH G;  1K9M G;  2G8C O;  3I55 E;  1VQ5 E;  2OTL E;  1VQN E;  4WF9 E;  3G4S E;  1N8R G;  5MLC H;  3CPW E;  3EC5 A;  3CD6 E;  3G71 E;  1K73 G;  1NJI G;  2OL8 O;  3CKF A;  2OY7 A;  1YIJ E;  1W2B E;  1Q7Y G;  3CMA E;  5GAE G;  1Q86 G;  5H1S I;  1Q82 G;  4IOA E;  2I5Z O;  2I5V O;  1OSP O;  3CCL E;  1RL6 A;  2OY8 A;  1VQ8 E;  1YIT E;  4WFB E;  5DM7 E;  1M1K G;  1KQS E;  1YJN E;  2AF5 A;  5B2A O;  1VQ9 E;  1M90 G;  3CCQ E;  2OTJ E;  3CCR E;  5GAG G;  2QEX E;  3CC2 E;  4U67 E;  1KD1 G;  1RJL C;  1YI2 E;  2ZJP E;  4IOC E;  2OYB O;  1YJW E;  1VQM E;  1VQL E;  2OL6 O;  1YJ9 E;  2PI3 O;  3CCV E;  3PIP E;  5B3M O;  3CCM E;  1VQ7 E;  1VQP E;  1S72 E;  5AN9 B;  5B10 O;  3CXC E;  1YHQ E;  2CQL A;  4IO9 E;  3CCU E; 
#chains in the Genus database with same CATH homology
 1QVF E;  1QVG E;  1K8A G;  3G6E E;  5GAD G;  3CME E;  2QA4 E;  1VQ4 E;  2ZJQ E;  1VQ6 E;  3CCE E;  5JVG E;  3I56 E;  4WFA E;  3CCJ E;  3CC4 E;  3OW2 E;  1JJ2 E;  3DLL E;  5HL7 E;  2ZJR E;  1Q81 G;  4WFN E;  3CC7 E;  1KC8 G;  1VQO E;  5JVH E;  3PIO E;  5DM6 E;  3CF5 E;  4WCE E;  1VQK E;  3J7Z G;  4UY8 G;  3CCS E;  5GAH G;  1K9M G;  3I55 E;  1VQ5 E;  2OTL E;  1VQN E;  4WF9 E;  3G4S E;  1N8R G;  5MLC H;  3CPW E;  3CD6 E;  3G71 E;  1K73 G;  1NJI G;  1YIJ E;  1W2B E;  1Q7Y G;  3CMA E;  5GAE G;  1Q86 G;  5H1S I;  1Q82 G;  4IOA E;  3CCL E;  1RL6 A;  1VQ8 E;  1YIT E;  4WFB E;  5DM7 E;  1M1K G;  1KQS E;  1YJN E;  1VQ9 E;  1M90 G;  3CCQ E;  2OTJ E;  3CCR E;  5GAG G;  2QEX E;  3CC2 E;  4U67 E;  1KD1 G;  1YI2 E;  2ZJP E;  4IOC E;  1YJW E;  1VQM E;  1VQL E;  1YJ9 E;  3CCV E;  3PIP E;  3CCM E;  1VQ7 E;  1VQP E;  1S72 E;  5AN9 B;  3CXC E;  1YHQ E;  2CQL A;  4IO9 E;  3CCU E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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