3J7ZH

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
50
structure length
50
Chain Sequence
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
total genus 7
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
H PF03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal protein L9, N-terminal domain 3j7zH00
2HBAA 3J7ZH 1CQUA 1DIVA 2HVFA 2HBBA 4UY8H
chains in the Genus database with same CATH superfamily
2HJQA 3J7ZH 1CQUA 4OO7A 2OUTA 3LPQA 4EZFA 3EW0A 3TBOA 4F1EA 3S2QA 4UY8H 4F2CA 1DIVA 2LSMA 2Q9QB 2EHOC 2HVFA 2E9XD 2QD0A 3ANWA 5EG5A 4OOAA 2Q9QA 3S2RA 4FS8A 2X49A 4FR0A 5GHSC 4F28A 3REEA 2QH7A 2HBBA 3TBNA 3FNVA 2HBAA 2X4AA 5GHRB 4KW7A 2E9XB 4FSDA 3CO4A 2R13A 4RSRA 3FNDA
chains in the Genus database with same CATH topology
2HBAA 3J7ZH 1CQUA 1DIVA 2HVFA 2HBBA 4UY8H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HBA A;  3J7Z H;  1CQU A;  1DIV A;  2HVF A;  2HBB A;  4UY8 H; 
#chains in the Genus database with same CATH topology
 2HJQ A;  3J7Z H;  1CQU A;  4OO7 A;  2OUT A;  3LPQ A;  4EZF A;  3EW0 A;  3TBO A;  4F1E A;  3S2Q A;  4UY8 H;  4F2C A;  1DIV A;  2LSM A;  2Q9Q B;  2EHO C;  2HVF A;  2E9X D;  2QD0 A;  3ANW A;  5EG5 A;  4OOA A;  2Q9Q A;  3S2R A;  4FS8 A;  2X49 A;  4FR0 A;  5GHS C;  4F28 A;  3REE A;  2QH7 A;  2HBB A;  3TBN A;  3FNV A;  2HBA A;  2X4A A;  5GHR B;  4KW7 A;  2E9X B;  4FSD A;  3CO4 A;  2R13 A;  4RSR A;  3FND A; 
#chains in the Genus database with same CATH homology
 2HBA A;  3J7Z H;  1CQU A;  1DIV A;  2HVF A;  2HBB A;  4UY8 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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