3J7ZK

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
122
structure length
122
Chain Sequence
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
total genus 21
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 3j7zK00
1S72K 1KQSJ 1VQPK 3CF5H 3J7ZK 3CXCJ 1VQ8K 3PIPH 1Q81L 4IO9H 3CC2K 1QVFJ 1KC8L 1VQMK 3J7YL 3OW2J 4U67H 1JJ2J 3CMEK 1KD1L 1YIJK 1WHIA 5GAGL 5H1SM 5DM7H 3I55K 4V19O 3CC7K 2QA4K 4WFAH 5GADL 1YHQK 4WF9H 3CPWJ 1VQLK 3G71K 3CCQK 1W2BJ 1VQ4K 4WCEH 3CD6K 5DM6H 1YITK 2ZJQH 3CCLK 2OTJK 1YJ9K 1K9ML 1VQNK 4UY8K 1Q82L 1K8AL 1VQ7K 1M90L 1VQ5K 3CCRK 3CMAK 1K73L 1M1KL 5MLCM 3G4SK 3CC4K 4IOCH 3CCVK 3CCEK 1VQ6K 1Q7YL 1QVGJ 3I56K 1Q86L 3CCMK 5JVGH 2OTLK 1VQOK 5JVHH 2ZJRH 5HL7H 4IOAH 3CCUK 1YI2K 3CCSK 3PIOH 1NJIL 1N8RL 1VQ9K 1YJWK 2ZJPH 4WFBH 5GAHL 3G6EK 5AN9E 3CCJK 1YJNK 3DLLH 4WFNH 2QEXK 5GAEL 1VQKK
chains in the Genus database with same CATH superfamily
1S72K 1KQSJ 1VQPK 3CF5H 3J7ZK 3CXCJ 1VQ8K 3PIPH 1Q81L 4IO9H 3CC2K 1QVFJ 1KC8L 1VQMK 3J7YL 3OW2J 4U67H 1JJ2J 3CMEK 1KD1L 1YIJK 1WHIA 5GAGL 5H1SM 5DM7H 3I55K 4V19O 3CC7K 2QA4K 4WFAH 5GADL 1YHQK 4WF9H 3CPWJ 1VQLK 3G71K 3CCQK 1W2BJ 1VQ4K 4WCEH 3CD6K 5DM6H 1YITK 2ZJQH 3CCLK 2OTJK 1YJ9K 1K9ML 1VQNK 4UY8K 1Q82L 1K8AL 1VQ7K 1M90L 1VQ5K 3CCRK 3CMAK 1K73L 1M1KL 5MLCM 3G4SK 3CC4K 4IOCH 3CCVK 3CCEK 1VQ6K 1Q7YL 1QVGJ 3I56K 1Q86L 3CCMK 5JVGH 2OTLK 1VQOK 5JVHH 2ZJRH 5HL7H 4IOAH 3CCUK 1YI2K 3CCSK 3PIOH 1NJIL 1N8RL 1VQ9K 1YJWK 2ZJPH 4WFBH 5GAHL 3G6EK 5AN9E 3CCJK 1YJNK 3DLLH 4WFNH 2QEXK 5GAEL 1VQKK
chains in the Genus database with same CATH topology
1S72K 1KQSJ 1VQPK 3CF5H 3J7ZK 3CXCJ 1VQ8K 3PIPH 1Q81L 4IO9H 3CC2K 1QVFJ 1KC8L 1VQMK 3J7YL 3OW2J 4U67H 1JJ2J 3CMEK 1KD1L 1YIJK 1WHIA 5GAGL 5H1SM 5DM7H 3I55K 4V19O 3CC7K 2QA4K 4WFAH 5GADL 1YHQK 4WF9H 3CPWJ 1VQLK 3G71K 3CCQK 1W2BJ 1VQ4K 4WCEH 3CD6K 5DM6H 1YITK 2ZJQH 3CCLK 2OTJK 1YJ9K 1K9ML 1VQNK 4UY8K 1Q82L 1K8AL 1VQ7K 1M90L 1VQ5K 3CCRK 3CMAK 1K73L 1M1KL 5MLCM 3G4SK 3CC4K 4IOCH 3CCVK 3CCEK 1VQ6K 1Q7YL 1QVGJ 3I56K 1Q86L 3CCMK 5JVGH 2OTLK 1VQOK 5JVHH 2ZJRH 5HL7H 4IOAH 3CCUK 1YI2K 3CCSK 3PIOH 1NJIL 1N8RL 1VQ9K 1YJWK 2ZJPH 4WFBH 5GAHL 3G6EK 5AN9E 3CCJK 1YJNK 3DLLH 4WFNH 2QEXK 5GAEL 1VQKK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S72 K;  1KQS J;  1VQP K;  3CF5 H;  3J7Z K;  3CXC J;  1VQ8 K;  3PIP H;  1Q81 L;  4IO9 H;  3CC2 K;  1QVF J;  1KC8 L;  1VQM K;  3J7Y L;  3OW2 J;  4U67 H;  1JJ2 J;  3CME K;  1KD1 L;  1YIJ K;  1WHI A;  5GAG L;  5H1S M;  5DM7 H;  3I55 K;  4V19 O;  3CC7 K;  2QA4 K;  4WFA H;  5GAD L;  1YHQ K;  4WF9 H;  3CPW J;  1VQL K;  3G71 K;  3CCQ K;  1W2B J;  1VQ4 K;  4WCE H;  3CD6 K;  5DM6 H;  1YIT K;  2ZJQ H;  3CCL K;  2OTJ K;  1YJ9 K;  1K9M L;  1VQN K;  4UY8 K;  1Q82 L;  1K8A L;  1VQ7 K;  1M90 L;  1VQ5 K;  3CCR K;  3CMA K;  1K73 L;  1M1K L;  5MLC M;  3G4S K;  3CC4 K;  4IOC H;  3CCV K;  3CCE K;  1VQ6 K;  1Q7Y L;  1QVG J;  3I56 K;  1Q86 L;  3CCM K;  5JVG H;  2OTL K;  1VQO K;  5JVH H;  2ZJR H;  5HL7 H;  4IOA H;  3CCU K;  1YI2 K;  3CCS K;  3PIO H;  1NJI L;  1N8R L;  1VQ9 K;  1YJW K;  2ZJP H;  4WFB H;  5GAH L;  3G6E K;  5AN9 E;  3CCJ K;  1YJN K;  3DLL H;  4WFN H;  2QEX K;  5GAE L;  1VQK K; 
#chains in the Genus database with same CATH topology
 1S72 K;  1KQS J;  1VQP K;  3CF5 H;  3J7Z K;  3CXC J;  1VQ8 K;  3PIP H;  1Q81 L;  4IO9 H;  3CC2 K;  1QVF J;  1KC8 L;  1VQM K;  3J7Y L;  3OW2 J;  4U67 H;  1JJ2 J;  3CME K;  1KD1 L;  1YIJ K;  1WHI A;  5GAG L;  5H1S M;  5DM7 H;  3I55 K;  4V19 O;  3CC7 K;  2QA4 K;  4WFA H;  5GAD L;  1YHQ K;  4WF9 H;  3CPW J;  1VQL K;  3G71 K;  3CCQ K;  1W2B J;  1VQ4 K;  4WCE H;  3CD6 K;  5DM6 H;  1YIT K;  2ZJQ H;  3CCL K;  2OTJ K;  1YJ9 K;  1K9M L;  1VQN K;  4UY8 K;  1Q82 L;  1K8A L;  1VQ7 K;  1M90 L;  1VQ5 K;  3CCR K;  3CMA K;  1K73 L;  1M1K L;  5MLC M;  3G4S K;  3CC4 K;  4IOC H;  3CCV K;  3CCE K;  1VQ6 K;  1Q7Y L;  1QVG J;  3I56 K;  1Q86 L;  3CCM K;  5JVG H;  2OTL K;  1VQO K;  5JVH H;  2ZJR H;  5HL7 H;  4IOA H;  3CCU K;  1YI2 K;  3CCS K;  3PIO H;  1NJI L;  1N8R L;  1VQ9 K;  1YJW K;  2ZJP H;  4WFB H;  5GAH L;  3G6E K;  5AN9 E;  3CCJ K;  1YJN K;  3DLL H;  4WFN H;  2QEX K;  5GAE L;  1VQK K; 
#chains in the Genus database with same CATH homology
 1S72 K;  1KQS J;  1VQP K;  3CF5 H;  3J7Z K;  3CXC J;  1VQ8 K;  3PIP H;  1Q81 L;  4IO9 H;  3CC2 K;  1QVF J;  1KC8 L;  1VQM K;  3J7Y L;  3OW2 J;  4U67 H;  1JJ2 J;  3CME K;  1KD1 L;  1YIJ K;  1WHI A;  5GAG L;  5H1S M;  5DM7 H;  3I55 K;  4V19 O;  3CC7 K;  2QA4 K;  4WFA H;  5GAD L;  1YHQ K;  4WF9 H;  3CPW J;  1VQL K;  3G71 K;  3CCQ K;  1W2B J;  1VQ4 K;  4WCE H;  3CD6 K;  5DM6 H;  1YIT K;  2ZJQ H;  3CCL K;  2OTJ K;  1YJ9 K;  1K9M L;  1VQN K;  4UY8 K;  1Q82 L;  1K8A L;  1VQ7 K;  1M90 L;  1VQ5 K;  3CCR K;  3CMA K;  1K73 L;  1M1K L;  5MLC M;  3G4S K;  3CC4 K;  4IOC H;  3CCV K;  3CCE K;  1VQ6 K;  1Q7Y L;  1QVG J;  3I56 K;  1Q86 L;  3CCM K;  5JVG H;  2OTL K;  1VQO K;  5JVH H;  2ZJR H;  5HL7 H;  4IOA H;  3CCU K;  1YI2 K;  3CCS K;  3PIO H;  1NJI L;  1N8R L;  1VQ9 K;  1YJW K;  2ZJP H;  4WFB H;  5GAH L;  3G6E K;  5AN9 E;  3CCJ K;  1YJN K;  3DLL H;  4WFN H;  2QEX K;  5GAE L;  1VQK K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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