3J7ZX

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 12
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
77
structure length
77
Chain Sequence
SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
total genus 12
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00830 Ribosomal_L28 Ribosomal L28 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.40 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal protein L28/L24 3j7zX00
5MLCY 5DM6U 3J7ZX 5H1SY 2JZ6A 4UY8X
chains in the Genus database with same CATH superfamily
1M90V 3I56U 1YJWU 1VQKU 3CC4U 1M1KV 1Q7YV 1KC8V 1VQ7U 1Q86V 1YJ9U 1JJ2T 3AO0A 1VQ9U 3CCLU 2JZ6A 1K9MV 1VQNU 3ANYA 3CD6U 1JJDA 3CC7U 3G4SU 3CXCT 1Q82V 3ABRA 1VQ4U 3ABOA 5DM6U 3CC2U 1YIJU 1QVGT 2OTLU 3J7ZX 1KD1V 3CCSU 3G71U 1YHQU 1S72U 1N8RV 3CCJU 3CMEU 5AN9G 3I55U 1VQ8U 1VQPU 1VQ5U 3CCEU 5H1SY 1KQST 1VQMU 1K8AV 3CCRU 1K73V 3CMAU 3CCQU 1Q81V 3CCVU 2OTJU 2QA4U 1W2BT 3CCUU 1QVFT 1VQLU 5MLCY 3OW2T 2QEZA 2QEXU 1YITU 1YJNU 1YI2U 3ABQA 1VQ6U 3CPWT 1NJIV 3G6EU 4UY8X 1VQOU 3CCMU 3ABSA
chains in the Genus database with same CATH topology
5MLCY 5DM6U 3J7ZX 5H1SY 2JZ6A 4UY8X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5MLC Y;  5DM6 U;  3J7Z X;  5H1S Y;  2JZ6 A;  4UY8 X; 
#chains in the Genus database with same CATH topology
 1M90 V;  3I56 U;  1YJW U;  1VQK U;  3CC4 U;  1M1K V;  1Q7Y V;  1KC8 V;  1VQ7 U;  1Q86 V;  1YJ9 U;  1JJ2 T;  3AO0 A;  1VQ9 U;  3CCL U;  2JZ6 A;  1K9M V;  1VQN U;  3ANY A;  3CD6 U;  1JJD A;  3CC7 U;  3G4S U;  3CXC T;  1Q82 V;  3ABR A;  1VQ4 U;  3ABO A;  5DM6 U;  3CC2 U;  1YIJ U;  1QVG T;  2OTL U;  3J7Z X;  1KD1 V;  3CCS U;  3G71 U;  1YHQ U;  1S72 U;  1N8R V;  3CCJ U;  3CME U;  5AN9 G;  3I55 U;  1VQ8 U;  1VQP U;  1VQ5 U;  3CCE U;  5H1S Y;  1KQS T;  1VQM U;  1K8A V;  3CCR U;  1K73 V;  3CMA U;  3CCQ U;  1Q81 V;  3CCV U;  2OTJ U;  2QA4 U;  1W2B T;  3CCU U;  1QVF T;  1VQL U;  5MLC Y;  3OW2 T;  2QEZ A;  2QEX U;  1YIT U;  1YJN U;  1YI2 U;  3ABQ A;  1VQ6 U;  3CPW T;  1NJI V;  3G6E U;  4UY8 X;  1VQO U;  3CCM U;  3ABS A; 
#chains in the Genus database with same CATH homology
 5MLC Y;  5DM6 U;  3J7Z X;  5H1S Y;  2JZ6 A;  4UY8 X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...