3JROC

Nup84-nup145c-sec13 edge element of the npc lattice
Total Genus 93
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
392
structure length
379
Chain Sequence
IDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLDEMELHPYNSRGLFEKKLMQDNKQLYQIWIVMVWLKENTYVMERPPTSKWLNSITSGGLKSCDLDFPLRENTNVLDVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICMILCGIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQAGLDPYERAIYSYLSGAIPNQEVLQYSDWESDLHIHLNQILQTEIENYLLENNQVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLMASVILDSLPSVIHSSVEMLLDVVDKPYLLRIVTHLAICLDIINPGSVEEVDKSKLITTYISLLKLQG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein, structural protein
molecule keywords Fusion Protein of Protein Transport Protein SEC13 and Nucleo
publication title Molecular architecture of the Nup84-Nup145C-Sec13 edge element in the nuclear pore complex lattice.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 93
structure length 379
sequence length 392
ec nomenclature
pdb deposition date 2009-09-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3450.20 Mainly Alpha Orthogonal Bundle Hyaluronidase domain-like Hyaluronidase domain-like 3jroC02
3IKOC 3JROC
chains in the Genus database with same CATH superfamily
4P3EC 4P3GA 2GNXA 5M73C 3IKOC 2IJQA 3JROC 4P3FA
chains in the Genus database with same CATH topology
4P3EC 4P3GA 2GNXA 5M73C 3IKOC 3JROC 4P3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IKO C;  3JRO C; 
#chains in the Genus database with same CATH topology
 4P3E C;  4P3G A;  2GNX A;  5M73 C;  3IKO C;  2IJQ A;  3JRO C;  4P3F A; 
#chains in the Genus database with same CATH homology
 4P3E C;  4P3G A;  2GNX A;  5M73 C;  3IKO C;  3JRO C;  4P3F A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...