3JRVA

Structure of poxvirus k7 protein in complex with rna helicase ddx3
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
144
structure length
142
Chain Sequence
DYEDAVFYFVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKINEIVEAMSDHYINFTKVHDQESLFATIGICAKITEHWGYKKISESRFQSLGNITDLMTDDNINILILFLEKKLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/protein binding
molecule keywords Protein K7
publication title Structural basis for targeting of human RNA helicase DDX3 by poxvirus protein K7
pubmed doi rcsb
source organism Vaccinia virus wr
total genus 52
structure length 142
sequence length 144
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06227 Poxvirus dsDNA Poxvirus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.20 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Apoptosis Regulator Bcl-x 3jrvA00
2UXEA 4LQKA 3JRVA 4BBDA 4BBCA 2I39A 4BBBA 2VVXA 2VVWA 2VVYA 4M0SA 2K36A
chains in the Genus database with same CATH superfamily
1Q59A 1AF3A 4D2LA 4WMRA 1MAZA 4BBDA 1F16A 1R2GA 2K36A 3CVAX 2MHSA 2JBXA 2XA0A 4OQ5A 5FMIA 4BBCA 3ILCA 2VOHA 5FDOA 1YSWA 4QVXA 5KU9A 3KJ2A 4ZIEA 2A5YA 3BL2A 5C6HA 2V6QA 1O0LA 5C3FA 2RODA 1MK3A 1YSNA 4MI8A 1R2HA 4ZBIA 4K5BC 3D7VA 2O2NA 5JSBA 5IF4A 3IIGA 4ZIIA 1G5JA 3KJ1A 1BXLA 2UXEA 4ZIHA 4S0OA 5FC4A 4BD8A 1YSGA 2BZWA 2I39A 2O22A 2VVYA 2PQKA 4U2VA 2M5BA 3IO9A 2KUAA 2YV6A 3IHEA 1G5MA 2ROCA 3MQPA 2ME8A 4HW4A 1GJHA 4BD7A 4BPJA 4BPIA 4HW2A 4B4SA 1R2EA 4U2UA 4OQ6A 1ZY3A 2O21A 3QBRA 2IMTA 2KBWA 4HW3A 4BDUA 5KTGA 4M0SA 2JBYA 4ZIGA 2BIDA 2IMSA 2VOFA 4UF1A 2VOGA 4UF3A 4YJ4A 4ZIFA 2NL9A 4UF2A 1R2DA 3WIYA 1WSXA 1DDBA 2VVWA 3IHCA 3WIXA 2W3LA 3IHDA 2O2FA 1PQ0A 4QNQA 3JRVA 2WH6A 2JM6B 1TY4A 4YK9A 2XPXA 3KZ0A 2MEJA 3MK8A 4LQKA 1YSIA 4BBBA 2VVXA 1R2IA 2VM6A 1OHUA 1PQ1A 3I1HA 2O42A 4OYDA 4BD2A 3DVUA 4ZEQA 4BD6A 3KJ0A 2ABOA 1LXLA 3IIHA 4ZBFA 2LR1A 2VTYA 3PK1A 5FDRA 2NLAA 2K7WA 4G35A 4D2MA 2B48A 5IEZA 4S0PA 2JCNA 2O2MA 2VOIA 1K3KA
chains in the Genus database with same CATH topology
4D2LA 4LQKA 4BBDA 4BBBA 2VVXA 4M0SA 2K36A 2JBYA 2UXEA 4UF1A 2JBXA 4BBCA 2I39A 4UF3A 2O42A 2VVYA 4UF2A 2VTYA 2VVWA 3JRVA 4D2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UXE A;  4LQK A;  3JRV A;  4BBD A;  4BBC A;  2I39 A;  4BBB A;  2VVX A;  2VVW A;  2VVY A;  4M0S A;  2K36 A; 
#chains in the Genus database with same CATH topology
 1Q59 A;  1AF3 A;  4D2L A;  4WMR A;  1MAZ A;  4BBD A;  1F16 A;  1R2G A;  2K36 A;  3CVA X;  2MHS A;  2JBX A;  2XA0 A;  4OQ5 A;  5FMI A;  4BBC A;  3ILC A;  2VOH A;  5FDO A;  1YSW A;  4QVX A;  5KU9 A;  3KJ2 A;  4ZIE A;  2A5Y A;  3BL2 A;  5C6H A;  2V6Q A;  1O0L A;  5C3F A;  2ROD A;  1MK3 A;  1YSN A;  4MI8 A;  1R2H A;  4ZBI A;  4K5B C;  3D7V A;  2O2N A;  5JSB A;  5IF4 A;  3IIG A;  4ZII A;  1G5J A;  3KJ1 A;  1BXL A;  2UXE A;  4ZIH A;  4S0O A;  5FC4 A;  4BD8 A;  1YSG A;  2BZW A;  2I39 A;  2O22 A;  2VVY A;  2PQK A;  4U2V A;  2M5B A;  3IO9 A;  2KUA A;  2YV6 A;  3IHE A;  1G5M A;  2ROC A;  3MQP A;  2ME8 A;  4HW4 A;  1GJH A;  4BD7 A;  4BPJ A;  4BPI A;  4HW2 A;  4B4S A;  1R2E A;  4U2U A;  4OQ6 A;  1ZY3 A;  2O21 A;  3QBR A;  2IMT A;  2KBW A;  4HW3 A;  4BDU A;  5KTG A;  4M0S A;  2JBY A;  4ZIG A;  2BID A;  2IMS A;  2VOF A;  4UF1 A;  2VOG A;  4UF3 A;  4YJ4 A;  4ZIF A;  2NL9 A;  4UF2 A;  1R2D A;  3WIY A;  1WSX A;  1DDB A;  2VVW A;  3IHC A;  3WIX A;  2W3L A;  3IHD A;  2O2F A;  1PQ0 A;  4QNQ A;  3JRV A;  2WH6 A;  2JM6 B;  1TY4 A;  4YK9 A;  2XPX A;  3KZ0 A;  2MEJ A;  3MK8 A;  4LQK A;  1YSI A;  4BBB A;  2VVX A;  1R2I A;  2VM6 A;  1OHU A;  1PQ1 A;  3I1H A;  2O42 A;  4OYD A;  4BD2 A;  3DVU A;  4ZEQ A;  4BD6 A;  3KJ0 A;  2ABO A;  1LXL A;  3IIH A;  4ZBF A;  2LR1 A;  2VTY A;  3PK1 A;  5FDR A;  2NLA A;  2K7W A;  4G35 A;  4D2M A;  2B48 A;  5IEZ A;  4S0P A;  2JCN A;  2O2M A;  2VOI A;  1K3K A; 
#chains in the Genus database with same CATH homology
 4D2L A;  4LQK A;  4BBD A;  4BBB A;  2VVX A;  4M0S A;  2K36 A;  2JBY A;  2UXE A;  4UF1 A;  2JBX A;  4BBC A;  2I39 A;  4UF3 A;  2O42 A;  2VVY A;  4UF2 A;  2VTY A;  2VVW A;  3JRV A;  4D2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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