3JS8A

Solvent-stable cholesterol oxidase
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
538
structure length
538
Chain Sequence
SQPNNFPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGAYALRKFARNDPQIAPLLAHVGRSLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLDSAGRVEAIWFPFTSNPWLKVWTVTPNKPLFSRQTDKPFNYPFSDNLPDEVTDLANKILSLGDGKLTPAFGKAQFAAASAGLVATASWDLWGWSKNLLLYVKPTTLRVTANGYAVLTRRENVQRVLNEFVTFYQARVQAYQQQGRYPMNGPVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSPLLDSLGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural characterization of the organic solvent-stable cholesterol oxidase from Chromobacterium sp. DS-1.
pubmed doi rcsb
source organism Chromobacterium sp. ds-1
molecule tags Oxidoreductase
molecule keywords Cholesterol oxidase
total genus 177
structure length 538
sequence length 538
ec nomenclature ec 1.1.3.6: Cholesterol oxidase.
pdb deposition date 2009-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09129 Chol_subst-bind Cholesterol oxidase, substrate-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 3js8A04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3js8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3js8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3js8A03
1W1MA 1VDVA 4DNSA 1F0XA 2Q85A 3AM9A 1E0YA 1FFVC 1W1RA 2GQTA 4JB1A 3DQ0A 1W1OA 3NVZB 2PLSA 1E8FA 3W8XA 2W3SA 2VFVA 3VTEA 3KJMA 3D2DA 4JAYA 4PVHA 4PZFA 1AHVA 1QLUA 3S1FA 2EXRA 3W8ZA 1W1SA 3I99A 5FXDA 2W54A 3S1DA 1MBBA 2BVGA 1W1KA 3D2JA 5D79A 3S1EA 5AE1A 3NRZB 1E8HA 2BVFA 3S1CA 3LAEA 4O95A 2BVHA 2GQUA 2OAIA 3AN1A 4PYTA 1WVFA 1W1QA 2MBRA 1VAOA 1UXYA 2AXRA 4OALA 2QPMA 2R2ZA 1WVEA 2YVSA 1QLTA 3TSHA 1SB3B 1FO4A 5FXPA 1ZR6A 2P3HA 1FFUC 2P4PA 2PLIA 1DZNA 1DIIA 4PVKA 3NVVB 3FWAA 1JRPA 5FXFA 3D2HA 1N61C 3W8WA 2P13A 4HG0A 5ADZA 4PVJA 1N60C 1ZXIC 3FW7A 4XLOA 3C0PA 3ETRB 3SR6B 3B9JB 3EUB3 1W1LA 3DEDA 3HRDC 2VFSA 2I0KA 3BW7A 4MLAA 2VFRA 5HQXA 1N63C 1FIQB 5FXEA 2E3TA 1N5WC 2VFTA 2W3RA 1HSKA 1E8GA 2QKNA 1V97A 3TX1A 2R8DA 5AE3A 3NVWB 4BCAA 2NQWA 2VFUA 1I19A 1AHUA 5AE2A 4PVEA 1WYGA 4UD8A 1AHZA 3LLBA 5HHZA 2Q4WA 1DIQA 1T3QC 3NS1B 4BBYA 3NVYB 3PM9A 2RK5A 4PWCA 2O3GA 2W55A 4EC3A 2VAOA 3TSJA 4ZOHB 4PWBA 3GSYA 1W1JA 1MBTA 3FW9A 3JS8A 4BC7A 1JROA 5G5HB 1N5XA 1N62C 3FW8A 5G5GB 3AMZA 1RM6B 5HMRA 4ML8A 4BC9A
chains in the Genus database with same CATH superfamily
1W1MA 1VDVA 3EJDB 4DNSA 2UUVA 1F0XA 2Q85A 3AM9A 2UUUA 1E0YA 1FFVC 1W1RA 2GQTA 4JB1A 2WDWA 3DQ0A 1W1OA 3NVZB 3EJBB 2PLSA 1E8FA 3W8XA 2W3SA 2VFVA 3VTEA 3KJMA 3D2DA 4JAYA 4PVHA 4PZFA 1AHVA 1QLUA 3S1FA 2EXRA 3W8ZA 1W1SA 3I99A 5FXDA 2W54A 3S1DA 1MBBA 2BVGA 1W1KA 3D2JA 5D79A 2Y4GA 3S1EA 5AE1A 3NRZB 1E8HA 2BVFA 3S1CA 3LAEA 5I1VA 5I1WA 4O95A 2BVHA 2GQUA 2OAIA 3AN1A 4PYTA 1WVFA 3PQBA 1W1QA 2MBRA 1VAOA 1UXYA 2AXRA 4OALA 2QPMA 2R2ZA 1WVEA 2YVSA 2Y3RA 1QLTA 3TSHA 1SB3B 1FO4A 5FXPA 1ZR6A 2P3HA 1FFUC 2P4PA 2PLIA 1DZNA 5L6FA 1DIIA 4PVKA 3NVVB 3FWAA 1JRPA 5FXFA 3D2HA 1N61C 3W8WA 2P13A 2Y08A 4HG0A 5L6GA 5ADZA 4PVJA 1N60C 3EJEB 1ZXIC 3POPA 3FW7A 4XLOA 3C0PA 3ETRB 3SR6B 3B9JB 3EUB3 1W1LA 3DEDA 3HRDC 2VFSA 2I0KA 3BW7A 4MLAA 2VFRA 2Y3SA 5HQXA 1N63C 1FIQB 2IPIA 5FXEA 2E3TA 1N5WC 2VFTA 2W3RA 1HSKA 1E8GA 2QKNA 1V97A 3TX1A 2R8DA 5AE3A 3NVWB 4BCAA 2NQWA 2VFUA 1I19A 1AHUA 5AE2A 4PVEA 1WYGA 4UD8A 1AHZA 3LLBA 5HHZA 2Q4WA 1DIQA 1T3QC 5K8EA 3NS1B 4BBYA 3NVYB 3PM9A 2RK5A 3RJAA 4PWCA 2O3GA 2W55A 4EC3A 2VAOA 3TSJA 3RJ8A 4ZOHB 4PWBA 3GSYA 1W1JA 1MBTA 3HSUA 5AWVA 3FW9A 3JS8A 4BC7A 1JROA 5G5HB 1N5XA 1N62C 3FW8A 5G5GB 3AMZA 1RM6B 5HMRA 4ML8A 4BC9A
chains in the Genus database with same CATH topology
1W1MA 1VDVA 4DNSA 2UUVA 1F0XA 2Q85A 3AM9A 2UUUA 1E0YA 1FFVC 1W1RA 2GQTA 4JB1A 2WDWA 3DQ0A 1W1OA 3NVZB 2PLSA 1E8FA 3W8XA 2W3SA 2VFVA 3VTEA 3KJMA 3D2DA 4JAYA 4PVHA 4PZFA 1AHVA 1QLUA 3S1FA 2EXRA 3W8ZA 1W1SA 3I99A 5FXDA 2W54A 3S1DA 1MBBA 2BVGA 1W1KA 3D2JA 5D79A 2Y4GA 3S1EA 5AE1A 3NRZB 1E8HA 2BVFA 3S1CA 3LAEA 5I1VA 5I1WA 4O95A 2BVHA 2GQUA 2OAIA 3AN1A 4PYTA 1WVFA 3PQBA 1W1QA 2MBRA 1VAOA 1UXYA 2AXRA 4OALA 2QPMA 2R2ZA 1WVEA 2YVSA 2Y3RA 1QLTA 3TSHA 1SB3B 1FO4A 5FXPA 1ZR6A 2P3HA 1FFUC 2P4PA 2PLIA 1DZNA 5L6FA 1DIIA 4PVKA 3NVVB 3FWAA 1JRPA 5FXFA 3D2HA 1N61C 3W8WA 2P13A 2Y08A 4HG0A 5L6GA 5ADZA 4PVJA 1N60C 3POPA 1ZXIC 3FW7A 4XLOA 3C0PA 3ETRB 3SR6B 3B9JB 3EUB3 1W1LA 3DEDA 3HRDC 2VFSA 2I0KA 3BW7A 4MLAA 2VFRA 2Y3SA 5HQXA 1N63C 1FIQB 2IPIA 5FXEA 2E3TA 1N5WC 2VFTA 2W3RA 1HSKA 1E8GA 2QKNA 1V97A 3TX1A 2R8DA 5AE3A 3NVWB 4BCAA 2NQWA 2VFUA 1I19A 1AHUA 5AE2A 4PVEA 1WYGA 4UD8A 1AHZA 3LLBA 5HHZA 2Q4WA 1DIQA 1T3QC 5K8EA 3NS1B 4BBYA 3NVYB 3PM9A 2RK5A 3RJAA 4PWCA 2O3GA 2W55A 4EC3A 2VAOA 3TSJA 3RJ8A 4ZOHB 4PWBA 3GSYA 1W1JA 1MBTA 3HSUA 5AWVA 3FW9A 3JS8A 4BC7A 1JROA 5G5HB 1N5XA 1N62C 3FW8A 5G5GB 3AMZA 1RM6B 5HMRA 4ML8A 4BC9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W1M A;  1VDV A;  4DNS A;  1F0X A;  2Q85 A;  3AM9 A;  1E0Y A;  1FFV C;  1W1R A;  2GQT A;  4JB1 A;  3DQ0 A;  1W1O A;  3NVZ B;  2PLS A;  1E8F A;  3W8X A;  2W3S A;  2VFV A;  3VTE A;  3KJM A;  3D2D A;  4JAY A;  4PVH A;  4PZF A;  1AHV A;  1QLU A;  3S1F A;  2EXR A;  3W8Z A;  1W1S A;  3I99 A;  5FXD A;  2W54 A;  3S1D A;  1MBB A;  2BVG A;  1W1K A;  3D2J A;  5D79 A;  3S1E A;  5AE1 A;  3NRZ B;  1E8H A;  2BVF A;  3S1C A;  3LAE A;  4O95 A;  2BVH A;  2GQU A;  2OAI A;  3AN1 A;  4PYT A;  1WVF A;  1W1Q A;  2MBR A;  1VAO A;  1UXY A;  2AXR A;  4OAL A;  2QPM A;  2R2Z A;  1WVE A;  2YVS A;  1QLT A;  3TSH A;  1SB3 B;  1FO4 A;  5FXP A;  1ZR6 A;  2P3H A;  1FFU C;  2P4P A;  2PLI A;  1DZN A;  1DII A;  4PVK A;  3NVV B;  3FWA A;  1JRP A;  5FXF A;  3D2H A;  1N61 C;  3W8W A;  2P13 A;  4HG0 A;  5ADZ A;  4PVJ A;  1N60 C;  1ZXI C;  3FW7 A;  4XLO A;  3C0P A;  3ETR B;  3SR6 B;  3B9J B;  3EUB 3;  1W1L A;  3DED A;  3HRD C;  2VFS A;  2I0K A;  3BW7 A;  4MLA A;  2VFR A;  5HQX A;  1N63 C;  1FIQ B;  5FXE A;  2E3T A;  1N5W C;  2VFT A;  2W3R A;  1HSK A;  1E8G A;  2QKN A;  1V97 A;  3TX1 A;  2R8D A;  5AE3 A;  3NVW B;  4BCA A;  2NQW A;  2VFU A;  1I19 A;  1AHU A;  5AE2 A;  4PVE A;  1WYG A;  4UD8 A;  1AHZ A;  3LLB A;  5HHZ A;  2Q4W A;  1DIQ A;  1T3Q C;  3NS1 B;  4BBY A;  3NVY B;  3PM9 A;  2RK5 A;  4PWC A;  2O3G A;  2W55 A;  4EC3 A;  2VAO A;  3TSJ A;  4ZOH B;  4PWB A;  3GSY A;  1W1J A;  1MBT A;  3FW9 A;  3JS8 A;  4BC7 A;  1JRO A;  5G5H B;  1N5X A;  1N62 C;  3FW8 A;  5G5G B;  3AMZ A;  1RM6 B;  5HMR A;  4ML8 A;  4BC9 A; 
#chains in the Genus database with same CATH topology
 1W1M A;  1VDV A;  3EJD B;  4DNS A;  2UUV A;  1F0X A;  2Q85 A;  3AM9 A;  2UUU A;  1E0Y A;  1FFV C;  1W1R A;  2GQT A;  4JB1 A;  2WDW A;  3DQ0 A;  1W1O A;  3NVZ B;  3EJB B;  2PLS A;  1E8F A;  3W8X A;  2W3S A;  2VFV A;  3VTE A;  3KJM A;  3D2D A;  4JAY A;  4PVH A;  4PZF A;  1AHV A;  1QLU A;  3S1F A;  2EXR A;  3W8Z A;  1W1S A;  3I99 A;  5FXD A;  2W54 A;  3S1D A;  1MBB A;  2BVG A;  1W1K A;  3D2J A;  5D79 A;  2Y4G A;  3S1E A;  5AE1 A;  3NRZ B;  1E8H A;  2BVF A;  3S1C A;  3LAE A;  5I1V A;  5I1W A;  4O95 A;  2BVH A;  2GQU A;  2OAI A;  3AN1 A;  4PYT A;  1WVF A;  3PQB A;  1W1Q A;  2MBR A;  1VAO A;  1UXY A;  2AXR A;  4OAL A;  2QPM A;  2R2Z A;  1WVE A;  2YVS A;  2Y3R A;  1QLT A;  3TSH A;  1SB3 B;  1FO4 A;  5FXP A;  1ZR6 A;  2P3H A;  1FFU C;  2P4P A;  2PLI A;  1DZN A;  5L6F A;  1DII A;  4PVK A;  3NVV B;  3FWA A;  1JRP A;  5FXF A;  3D2H A;  1N61 C;  3W8W A;  2P13 A;  2Y08 A;  4HG0 A;  5L6G A;  5ADZ A;  4PVJ A;  1N60 C;  3EJE B;  1ZXI C;  3POP A;  3FW7 A;  4XLO A;  3C0P A;  3ETR B;  3SR6 B;  3B9J B;  3EUB 3;  1W1L A;  3DED A;  3HRD C;  2VFS A;  2I0K A;  3BW7 A;  4MLA A;  2VFR A;  2Y3S A;  5HQX A;  1N63 C;  1FIQ B;  2IPI A;  5FXE A;  2E3T A;  1N5W C;  2VFT A;  2W3R A;  1HSK A;  1E8G A;  2QKN A;  1V97 A;  3TX1 A;  2R8D A;  5AE3 A;  3NVW B;  4BCA A;  2NQW A;  2VFU A;  1I19 A;  1AHU A;  5AE2 A;  4PVE A;  1WYG A;  4UD8 A;  1AHZ A;  3LLB A;  5HHZ A;  2Q4W A;  1DIQ A;  1T3Q C;  5K8E A;  3NS1 B;  4BBY A;  3NVY B;  3PM9 A;  2RK5 A;  3RJA A;  4PWC A;  2O3G A;  2W55 A;  4EC3 A;  2VAO A;  3TSJ A;  3RJ8 A;  4ZOH B;  4PWB A;  3GSY A;  1W1J A;  1MBT A;  3HSU A;  5AWV A;  3FW9 A;  3JS8 A;  4BC7 A;  1JRO A;  5G5H B;  1N5X A;  1N62 C;  3FW8 A;  5G5G B;  3AMZ A;  1RM6 B;  5HMR A;  4ML8 A;  4BC9 A; 
#chains in the Genus database with same CATH homology
 1W1M A;  1VDV A;  4DNS A;  2UUV A;  1F0X A;  2Q85 A;  3AM9 A;  2UUU A;  1E0Y A;  1FFV C;  1W1R A;  2GQT A;  4JB1 A;  2WDW A;  3DQ0 A;  1W1O A;  3NVZ B;  2PLS A;  1E8F A;  3W8X A;  2W3S A;  2VFV A;  3VTE A;  3KJM A;  3D2D A;  4JAY A;  4PVH A;  4PZF A;  1AHV A;  1QLU A;  3S1F A;  2EXR A;  3W8Z A;  1W1S A;  3I99 A;  5FXD A;  2W54 A;  3S1D A;  1MBB A;  2BVG A;  1W1K A;  3D2J A;  5D79 A;  2Y4G A;  3S1E A;  5AE1 A;  3NRZ B;  1E8H A;  2BVF A;  3S1C A;  3LAE A;  5I1V A;  5I1W A;  4O95 A;  2BVH A;  2GQU A;  2OAI A;  3AN1 A;  4PYT A;  1WVF A;  3PQB A;  1W1Q A;  2MBR A;  1VAO A;  1UXY A;  2AXR A;  4OAL A;  2QPM A;  2R2Z A;  1WVE A;  2YVS A;  2Y3R A;  1QLT A;  3TSH A;  1SB3 B;  1FO4 A;  5FXP A;  1ZR6 A;  2P3H A;  1FFU C;  2P4P A;  2PLI A;  1DZN A;  5L6F A;  1DII A;  4PVK A;  3NVV B;  3FWA A;  1JRP A;  5FXF A;  3D2H A;  1N61 C;  3W8W A;  2P13 A;  2Y08 A;  4HG0 A;  5L6G A;  5ADZ A;  4PVJ A;  1N60 C;  3POP A;  1ZXI C;  3FW7 A;  4XLO A;  3C0P A;  3ETR B;  3SR6 B;  3B9J B;  3EUB 3;  1W1L A;  3DED A;  3HRD C;  2VFS A;  2I0K A;  3BW7 A;  4MLA A;  2VFR A;  2Y3S A;  5HQX A;  1N63 C;  1FIQ B;  2IPI A;  5FXE A;  2E3T A;  1N5W C;  2VFT A;  2W3R A;  1HSK A;  1E8G A;  2QKN A;  1V97 A;  3TX1 A;  2R8D A;  5AE3 A;  3NVW B;  4BCA A;  2NQW A;  2VFU A;  1I19 A;  1AHU A;  5AE2 A;  4PVE A;  1WYG A;  4UD8 A;  1AHZ A;  3LLB A;  5HHZ A;  2Q4W A;  1DIQ A;  1T3Q C;  5K8E A;  3NS1 B;  4BBY A;  3NVY B;  3PM9 A;  2RK5 A;  3RJA A;  4PWC A;  2O3G A;  2W55 A;  4EC3 A;  2VAO A;  3TSJ A;  3RJ8 A;  4ZOH B;  4PWB A;  3GSY A;  1W1J A;  1MBT A;  3HSU A;  5AWV A;  3FW9 A;  3JS8 A;  4BC7 A;  1JRO A;  5G5H B;  1N5X A;  1N62 C;  3FW8 A;  5G5G B;  3AMZ A;  1RM6 B;  5HMR A;  4ML8 A;  4BC9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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