3JTFA

The cbs domain pair structure of a magnesium and cobalt efflux protein from bordetella parapertussis in complex with amp
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
124
Chain Sequence
ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEGGISGLVTMEDVLEQIVGDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Magnesium and cobalt efflux protein
publication title The CBS Domain Pair Structure of a magnesium and cobalt efflux protein from Bordetella parapertussis in complex with AMP
rcsb
source organism Bordetella parapertussis
total genus 30
structure length 124
sequence length 125
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1280.20 Alpha Beta Alpha-Beta Complex CBS domain Like CBS domain Like 3jtfA02
3.90.1280.20 Alpha Beta Alpha-Beta Complex CBS domain Like CBS domain Like 3jtfA01
2J9LA 3NQRA 1VR9A 3GHDA 3LFRA 2JA3A 3JTFA 3OI8A
chains in the Genus database with same CATH superfamily
2J9LA 3NQRA 1VR9A 3GHDA 3LFRA 1VZYA 2JA3A 1VQ0A 3JTFA 1XJHA 3OI8A
chains in the Genus database with same CATH topology
2J9LA 3NQRA 1VR9A 3GHDA 3LFRA 2JA3A 3JTFA 3OI8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J9L A;  3NQR A;  1VR9 A;  3GHD A;  3LFR A;  2JA3 A;  3JTF A;  3OI8 A; 
#chains in the Genus database with same CATH topology
 2J9L A;  3NQR A;  1VR9 A;  3GHD A;  3LFR A;  1VZY A;  2JA3 A;  1VQ0 A;  3JTF A;  1XJH A;  3OI8 A; 
#chains in the Genus database with same CATH homology
 2J9L A;  3NQR A;  1VR9 A;  3GHD A;  3LFR A;  2JA3 A;  3JTF A;  3OI8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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