3JX8A

Crystal structure of putative lipid binding protein (yp_001304415.1) from parabacteroides distasonis atcc 8503 at 2.16 a resolution
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
247
structure length
247
Chain Sequence
DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
source organism Parabacteroides distasonis atcc 8503
publication title Crystal structure of Putative lipid binding protein (YP_001304415.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution
rcsb
molecule keywords Putative lipoprotein
total genus 88
structure length 247
sequence length 247
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2009-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3jx8A00
3LJYA 3LYCA 3JX8A 3PETA 4OPWA
chains in the Genus database with same CATH superfamily
3B4NA 4PMHA 4URRA 2YUHA 2BM5A 1OGMX 2XT4A 5JMCB 4YELA 4NK8A 2INUA 3P4GA 1O8IA 3GQAA 4U4BA 4NK6A 1H80A 1VBLA 4XLCA 1O8HA 1QJVA 3N6ZA 3GQ7A 3FY3A 1CZFA 1O8FA 4XLAA 3SY2A 3NAWA 1KQ5A 3RIQA 3GQ9A 4XN3A 2VFQA 1HG8A 1O8KA 4XORA 5C1EA 1BN8A 3BH6B 2XT2A 2XTWA 3LYCA 4XN0A 2IOUG 4MR0A 3SYJA 4C2LA 1IB4A 2QZAA 2O6WA 1O8LA 1KCDA 3LMWA 2NT6A 4XKVA 1NHCA 4Z06A 4XNFA 2EWEA 1CLWA 2B0RA 4YEJA 1K5CA 1OFMA 3SZEA 3VSTA 1K4ZA 1KTWA 2BM7A 2IQ7A 1OFEA 2X6XA 4OJPA 2W7ZA 2O0VA 4YZQA 1O8GA 1WMRA 1HF2A 2X85A 3EQOA 1QA1A 1RMGA 4U49A 2BM4A 2O04A 2VBKA 1PXZA 4JRAC 2NT9A 4YEIA 1RWRA 3B8YA 4YFOA 1PE9A 3VMVA 2QXZA 4W8RA 3DU1X 5DNSA 4MXNA 2PECA 2VFOA 2J8IA 4XMYA 1DBGA 4YZXA 1TSPA 1TYUA 2UVEA 1OGOX 1X0CA 4OJ5A 1OOCA 3PSZA 1IA5A 2XC1A 2V5IA 4XONA 2VBEA 1IDJA 3PSSA 1IDKA 4Z03A 1JRGA 4W8QA 2VJIA 3B90A 4XOPA 2X6WA 4XOTA 2F3LA 4OM9A 3VSUA 4XQFA 2UVFA 1O8EA 4OJ6A 5AMVA 2G0YA 4OZZA 1L1IA 1TYWA 3AK5A 1XG2A 1LLZA 1AIRA 1PLUA 3GQ8A 4HWVA 1DBOA 2INVA 1O8JA 2NSPA 1DABA 2PYGA 1RU4A 3ML3A 3TH0A 4AVZA 4YZ0A 4XKWA 1QRCA 4EW9A 2BM6A 3N90A 2VJJA 1OFLA 4XR6A 1QA2A 1QRBA 2NTBA 2Z8GA 2BSPA 5C1CA 1K8FA 4XLHA 4YCQA 4OZYA 2XTYA 3ZPPA 1LM1A 4Z05A 1O8DA 2NZMA 2VFPA 1EE6A 3LJYA 3WWGA 2QY1A 4W8SA 2PYHA 2ODLA 2QX3A 1JTAA 1QCXA 1LLWA 1TYXA 4XM3A 5JLVC 1O88A 1EZGA 2BX6A 2NTQA 3GRHA 2QYUA 2X3HA 3BH7B 2O17A 1OFDA 3SQVA 4YC5A 1TYVA 1QA3A 2X6YA 3VMWA 3T9GA 4XLFA 4I84A 1O8MA 3H09A 2J8KA 3JX8A 3PETA 3UW0A 1QQ1A 2NTPA 3ZSCA 3JURA 1WXRA 3EQNA 1GQ8A 1EA0A 4YDTA 2O0WA 2XTXA 2VFMA 4V02C 4XLEA 3VSVA 3KRGA 3SUCA 2NSTA 4OJLA 4YZAA 1KCCA 2VFNA 4OJOA 3NB2A 1BHEA 4XL9A 2VBMA 4OPWA 4KH3A 4W8TA 2O1DA
chains in the Genus database with same CATH topology
1HF2A 2BX6A 1QA1A 2BM4A 2BM5A 2YUHA 5JMCB 1DABA 3ML3A 3P4GA 3BH7B 4JRAC 3TH0A 1QA2A 1TYVA 1QRCA 1QA3A 3N6ZA 2BM6A 3N90A 3H09A 3JX8A 3PETA 1KQ5A 2VFOA 2J8IA 1QQ1A 1QRBA 2VFQA 3RIQA 1TSPA 1TYUA 1K8FA 3BH6B 4OJ5A 1WXRA 3LYCA 2IOUG 3SYJA 2XC1A 2V5IA 4V02C 2VFMA 2VFPA 1CLWA 2B0RA 2F3LA 3LJYA 4OJLA 4OM9A 3SZEA 1K4ZA 2VFNA 4OJ6A 2G0YA 4OJOA 5JLVC 1TYWA 1TYXA 2BM7A 3AK5A 4OJPA 2W7ZA 4OPWA 4KH3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LJY A;  3LYC A;  3JX8 A;  3PET A;  4OPW A; 
#chains in the Genus database with same CATH topology
 3B4N A;  4PMH A;  4URR A;  2YUH A;  2BM5 A;  1OGM X;  2XT4 A;  5JMC B;  4YEL A;  4NK8 A;  2INU A;  3P4G A;  1O8I A;  3GQA A;  4U4B A;  4NK6 A;  1H80 A;  1VBL A;  4XLC A;  1O8H A;  1QJV A;  3N6Z A;  3GQ7 A;  3FY3 A;  1CZF A;  1O8F A;  4XLA A;  3SY2 A;  3NAW A;  1KQ5 A;  3RIQ A;  3GQ9 A;  4XN3 A;  2VFQ A;  1HG8 A;  1O8K A;  4XOR A;  5C1E A;  1BN8 A;  3BH6 B;  2XT2 A;  2XTW A;  3LYC A;  4XN0 A;  2IOU G;  4MR0 A;  3SYJ A;  4C2L A;  1IB4 A;  2QZA A;  2O6W A;  1O8L A;  1KCD A;  3LMW A;  2NT6 A;  4XKV A;  1NHC A;  4Z06 A;  4XNF A;  2EWE A;  1CLW A;  2B0R A;  4YEJ A;  1K5C A;  1OFM A;  3SZE A;  3VST A;  1K4Z A;  1KTW A;  2BM7 A;  2IQ7 A;  1OFE A;  2X6X A;  4OJP A;  2W7Z A;  2O0V A;  4YZQ A;  1O8G A;  1WMR A;  1HF2 A;  2X85 A;  3EQO A;  1QA1 A;  1RMG A;  4U49 A;  2BM4 A;  2O04 A;  2VBK A;  1PXZ A;  4JRA C;  2NT9 A;  4YEI A;  1RWR A;  3B8Y A;  4YFO A;  1PE9 A;  3VMV A;  2QXZ A;  4W8R A;  3DU1 X;  5DNS A;  4MXN A;  2PEC A;  2VFO A;  2J8I A;  4XMY A;  1DBG A;  4YZX A;  1TSP A;  1TYU A;  2UVE A;  1OGO X;  1X0C A;  4OJ5 A;  1OOC A;  3PSZ A;  1IA5 A;  2XC1 A;  2V5I A;  4XON A;  2VBE A;  1IDJ A;  3PSS A;  1IDK A;  4Z03 A;  1JRG A;  4W8Q A;  2VJI A;  3B90 A;  4XOP A;  2X6W A;  4XOT A;  2F3L A;  4OM9 A;  3VSU A;  4XQF A;  2UVF A;  1O8E A;  4OJ6 A;  5AMV A;  2G0Y A;  4OZZ A;  1L1I A;  1TYW A;  3AK5 A;  1XG2 A;  1LLZ A;  1AIR A;  1PLU A;  3GQ8 A;  4HWV A;  1DBO A;  2INV A;  1O8J A;  2NSP A;  1DAB A;  2PYG A;  1RU4 A;  3ML3 A;  3TH0 A;  4AVZ A;  4YZ0 A;  4XKW A;  1QRC A;  4EW9 A;  2BM6 A;  3N90 A;  2VJJ A;  1OFL A;  4XR6 A;  1QA2 A;  1QRB A;  2NTB A;  2Z8G A;  2BSP A;  5C1C A;  1K8F A;  4XLH A;  4YCQ A;  4OZY A;  2XTY A;  3ZPP A;  1LM1 A;  4Z05 A;  1O8D A;  2NZM A;  2VFP A;  1EE6 A;  3LJY A;  3WWG A;  2QY1 A;  4W8S A;  2PYH A;  2ODL A;  2QX3 A;  1JTA A;  1QCX A;  1LLW A;  1TYX A;  4XM3 A;  5JLV C;  1O88 A;  1EZG A;  2BX6 A;  2NTQ A;  3GRH A;  2QYU A;  2X3H A;  3BH7 B;  2O17 A;  1OFD A;  3SQV A;  4YC5 A;  1TYV A;  1QA3 A;  2X6Y A;  3VMW A;  3T9G A;  4XLF A;  4I84 A;  1O8M A;  3H09 A;  2J8K A;  3JX8 A;  3PET A;  3UW0 A;  1QQ1 A;  2NTP A;  3ZSC A;  3JUR A;  1WXR A;  3EQN A;  1GQ8 A;  1EA0 A;  4YDT A;  2O0W A;  2XTX A;  2VFM A;  4V02 C;  4XLE A;  3VSV A;  3KRG A;  3SUC A;  2NST A;  4OJL A;  4YZA A;  1KCC A;  2VFN A;  4OJO A;  3NB2 A;  1BHE A;  4XL9 A;  2VBM A;  4OPW A;  4KH3 A;  4W8T A;  2O1D A; 
#chains in the Genus database with same CATH homology
 1HF2 A;  2BX6 A;  1QA1 A;  2BM4 A;  2BM5 A;  2YUH A;  5JMC B;  1DAB A;  3ML3 A;  3P4G A;  3BH7 B;  4JRA C;  3TH0 A;  1QA2 A;  1TYV A;  1QRC A;  1QA3 A;  3N6Z A;  2BM6 A;  3N90 A;  3H09 A;  3JX8 A;  3PET A;  1KQ5 A;  2VFO A;  2J8I A;  1QQ1 A;  1QRB A;  2VFQ A;  3RIQ A;  1TSP A;  1TYU A;  1K8F A;  3BH6 B;  4OJ5 A;  1WXR A;  3LYC A;  2IOU G;  3SYJ A;  2XC1 A;  2V5I A;  4V02 C;  2VFM A;  2VFP A;  1CLW A;  2B0R A;  2F3L A;  3LJY A;  4OJL A;  4OM9 A;  3SZE A;  1K4Z A;  2VFN A;  4OJ6 A;  2G0Y A;  4OJO A;  5JLV C;  1TYW A;  1TYX A;  2BM7 A;  3AK5 A;  4OJP A;  2W7Z A;  4OPW A;  4KH3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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