3JX8A

Crystal structure of putative lipid binding protein (yp_001304415.1) from parabacteroides distasonis atcc 8503 at 2.16 a resolution
Total Genus 88
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
247
structure length
247
Chain Sequence
DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of Putative lipid binding protein (YP_001304415.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution
rcsb
molecule keywords Putative lipoprotein
source organism Parabacteroides distasonis atcc 8503
molecule tags Cell adhesion
total genus 88
structure length 247
sequence length 247
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2009-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3jx8A00
3JX8A 3PETA 4OPWA 3LYCA 3LJYA
chains in the Genus database with same CATH superfamily
4URRA 4HWVA 3VMWA 4Z03A 4XL9A 3NB2A 4XORA 3SUCA 1QJVA 3GQAA 2XC1A 1O8DA 3B90A 2O6WA 4OJOA 2B0RA 3GQ7A 4Z06A 2VBEA 1HG8A 3N6ZA 4MXNA 1O8JA 3VMVA 2O0VA 1K5CA 4I84A 2VBMA 2VJJA 1PXZA 4XLHA 2BM7A 3RIQA 1BN8A 4V02C 2YUHA 4W8SA 4KH3A 1QRCA 1RMGA 3GQ9A 1PLUA 4XLCA 3SQVA 1O8FA 3SY2A 1K4ZA 4XM3A 3DU1X 2IOUG 2BSPA 2UVFA 1BHEA 1CZFA 4MR0A 4U49A 4XONA 4YC5A 1EA0A 3WWGA 2X6XA 4OZZA 3NAWA 2PYGA 4YDTA 2XT2A 4YZAA 2BM4A 2INUA 5AMVA 4YCQA 2BX6A 3N90A 2UVEA 2X6YA 3UW0A 3VSTA 3VSVA 2Z8GA 3VSUA 4XLFA 5JLVC 2VFQA 2X6WA 3LJYA 1LM1A 4YFOA 1O8EA 5JMCB 1HF2A 2VFPA 3SZEA 4W8RA 4XMYA 4OJLA 4NK8A 1H80A 2XT4A 1QA1A 2NTPA 4YZXA 1JTAA 2VBKA 2XTWA 1IDKA 2G0YA 2NTBA 4C2LA 3AK5A 1QA2A 2IQ7A 4OPWA 1CLWA 4OM9A 4OZYA 4Z05A 2NT9A 2O17A 3BH7B 1O8MA 4YELA 2O0WA 2F3LA 2QY1A 1O88A 2XTXA 1DBGA 2O1DA 3B4NA 3FY3A 3JURA 1OFLA 1AIRA 3EQOA 1O8IA 4AVZA 3PSSA 2VFNA 2VJIA 4OJPA 1JRGA 3H09A 4EW9A 1LLZA 2EWEA 1OGOX 4XR6A 1O8LA 1QRBA 1LLWA 2ODLA 2PYHA 3BH6B 3T9GA 1KTWA 2NTQA 1OFEA 3EQNA 1IB4A 5DNSA 1O8KA 1K8FA 2VFOA 1DBOA 3PETA 2QX3A 1L1IA 1XG2A 4JRAC 2QXZA 1QCXA 4XNFA 4W8QA 1TYWA 3P4GA 2BM5A 4YEJA 1DABA 1OOCA 4W8TA 3ZPPA 1OGMX 4XN0A 2PECA 3GQ8A 1TYUA 1O8GA 2X3HA 2BM6A 4XLAA 2XTYA 1IA5A 2NZMA 1RU4A 5C1CA 4XQFA 2NT6A 1OFDA 4XOTA 1O8HA 2INVA 2J8KA 4YZQA 1TSPA 1TYXA 1KQ5A 4OJ6A 1X0CA 1VBLA 1WXRA 1QQ1A 3GRHA 4OJ5A 2VFMA 3LMWA 1EZGA 3TH0A 2QYUA 2X85A 3ML3A 1WMRA 3JX8A 2J8IA 4PMHA 1GQ8A 4XN3A 4YEIA 2NSPA 2V5IA 3LYCA 1KCDA 1RWRA 2O04A 2W7ZA 4XLEA 3PSZA 4XKWA 3SYJA 1PE9A 1OFMA 4U4BA 4XKVA 4YZ0A 3KRGA 3ZSCA 1NHCA 1IDJA 1TYVA 1KCCA 5C1EA 3B8YA 2QZAA 1QA3A 2NSTA 4XOPA 1EE6A 4NK6A
chains in the Genus database with same CATH topology
1TSPA 1TYXA 1KQ5A 4OJ6A 1QRBA 1WXRA 3BH6B 1QQ1A 4OJ5A 2XC1A 2VFMA 5JLVC 2VFQA 3TH0A 3LJYA 2B0RA 3ML3A 4OJOA 2VFOA 1K8FA 3JX8A 2J8IA 1HF2A 3N6ZA 2VFPA 3PETA 3SZEA 5JMCB 4JRAC 4OJLA 3H09A 2V5IA 3LYCA 2BM7A 3RIQA 1TYWA 4V02C 1QA1A 2YUHA 3P4GA 2W7ZA 2BM5A 4KH3A 2G0YA 3SYJA 1QRCA 1DABA 1QA2A 4OPWA 3AK5A 1CLWA 4OM9A 1K4ZA 3BH7B 2IOUG 1TYUA 1TYVA 2F3LA 2BM6A 1QA3A 2VFNA 2BM4A 4OJPA 2BX6A 3N90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JX8 A;  3PET A;  4OPW A;  3LYC A;  3LJY A; 
#chains in the Genus database with same CATH topology
 4URR A;  4HWV A;  3VMW A;  4Z03 A;  4XL9 A;  3NB2 A;  4XOR A;  3SUC A;  1QJV A;  3GQA A;  2XC1 A;  1O8D A;  3B90 A;  2O6W A;  4OJO A;  2B0R A;  3GQ7 A;  4Z06 A;  2VBE A;  1HG8 A;  3N6Z A;  4MXN A;  1O8J A;  3VMV A;  2O0V A;  1K5C A;  4I84 A;  2VBM A;  2VJJ A;  1PXZ A;  4XLH A;  2BM7 A;  3RIQ A;  1BN8 A;  4V02 C;  2YUH A;  4W8S A;  4KH3 A;  1QRC A;  1RMG A;  3GQ9 A;  1PLU A;  4XLC A;  3SQV A;  1O8F A;  3SY2 A;  1K4Z A;  4XM3 A;  3DU1 X;  2IOU G;  2BSP A;  2UVF A;  1BHE A;  1CZF A;  4MR0 A;  4U49 A;  4XON A;  4YC5 A;  1EA0 A;  3WWG A;  2X6X A;  4OZZ A;  3NAW A;  2PYG A;  4YDT A;  2XT2 A;  4YZA A;  2BM4 A;  2INU A;  5AMV A;  4YCQ A;  2BX6 A;  3N90 A;  2UVE A;  2X6Y A;  3UW0 A;  3VST A;  3VSV A;  2Z8G A;  3VSU A;  4XLF A;  5JLV C;  2VFQ A;  2X6W A;  3LJY A;  1LM1 A;  4YFO A;  1O8E A;  5JMC B;  1HF2 A;  2VFP A;  3SZE A;  4W8R A;  4XMY A;  4OJL A;  4NK8 A;  1H80 A;  2XT4 A;  1QA1 A;  2NTP A;  4YZX A;  1JTA A;  2VBK A;  2XTW A;  1IDK A;  2G0Y A;  2NTB A;  4C2L A;  3AK5 A;  1QA2 A;  2IQ7 A;  4OPW A;  1CLW A;  4OM9 A;  4OZY A;  4Z05 A;  2NT9 A;  2O17 A;  3BH7 B;  1O8M A;  4YEL A;  2O0W A;  2F3L A;  2QY1 A;  1O88 A;  2XTX A;  1DBG A;  2O1D A;  3B4N A;  3FY3 A;  3JUR A;  1OFL A;  1AIR A;  3EQO A;  1O8I A;  4AVZ A;  3PSS A;  2VFN A;  2VJI A;  4OJP A;  1JRG A;  3H09 A;  4EW9 A;  1LLZ A;  2EWE A;  1OGO X;  4XR6 A;  1O8L A;  1QRB A;  1LLW A;  2ODL A;  2PYH A;  3BH6 B;  3T9G A;  1KTW A;  2NTQ A;  1OFE A;  3EQN A;  1IB4 A;  5DNS A;  1O8K A;  1K8F A;  2VFO A;  1DBO A;  3PET A;  2QX3 A;  1L1I A;  1XG2 A;  4JRA C;  2QXZ A;  1QCX A;  4XNF A;  4W8Q A;  1TYW A;  3P4G A;  2BM5 A;  4YEJ A;  1DAB A;  1OOC A;  4W8T A;  3ZPP A;  1OGM X;  4XN0 A;  2PEC A;  3GQ8 A;  1TYU A;  1O8G A;  2X3H A;  2BM6 A;  4XLA A;  2XTY A;  1IA5 A;  2NZM A;  1RU4 A;  5C1C A;  4XQF A;  2NT6 A;  1OFD A;  4XOT A;  1O8H A;  2INV A;  2J8K A;  4YZQ A;  1TSP A;  1TYX A;  1KQ5 A;  4OJ6 A;  1X0C A;  1VBL A;  1WXR A;  1QQ1 A;  3GRH A;  4OJ5 A;  2VFM A;  3LMW A;  1EZG A;  3TH0 A;  2QYU A;  2X85 A;  3ML3 A;  1WMR A;  3JX8 A;  2J8I A;  4PMH A;  1GQ8 A;  4XN3 A;  4YEI A;  2NSP A;  2V5I A;  3LYC A;  1KCD A;  1RWR A;  2O04 A;  2W7Z A;  4XLE A;  3PSZ A;  4XKW A;  3SYJ A;  1PE9 A;  1OFM A;  4U4B A;  4XKV A;  4YZ0 A;  3KRG A;  3ZSC A;  1NHC A;  1IDJ A;  1TYV A;  1KCC A;  5C1E A;  3B8Y A;  2QZA A;  1QA3 A;  2NST A;  4XOP A;  1EE6 A;  4NK6 A; 
#chains in the Genus database with same CATH homology
 1TSP A;  1TYX A;  1KQ5 A;  4OJ6 A;  1QRB A;  1WXR A;  3BH6 B;  1QQ1 A;  4OJ5 A;  2XC1 A;  2VFM A;  5JLV C;  2VFQ A;  3TH0 A;  3LJY A;  2B0R A;  3ML3 A;  4OJO A;  2VFO A;  1K8F A;  3JX8 A;  2J8I A;  1HF2 A;  3N6Z A;  2VFP A;  3PET A;  3SZE A;  5JMC B;  4JRA C;  4OJL A;  3H09 A;  2V5I A;  3LYC A;  2BM7 A;  3RIQ A;  1TYW A;  4V02 C;  1QA1 A;  2YUH A;  3P4G A;  2W7Z A;  2BM5 A;  4KH3 A;  2G0Y A;  3SYJ A;  1QRC A;  1DAB A;  1QA2 A;  4OPW A;  3AK5 A;  1CLW A;  4OM9 A;  1K4Z A;  3BH7 B;  2IOU G;  1TYU A;  1TYV A;  2F3L A;  2BM6 A;  1QA3 A;  2VFN A;  2BM4 A;  4OJP A;  2BX6 A;  3N90 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...