3K4IA

Crystal structure of uncharacterized protein pspto_3204 from pseudomonas syringae pv. tomato str. dc3000
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
212
structure length
202
Chain Sequence
FEYTPIAQSVLDECEHLDTASLSDALDSLGIDGGLPGIASQVPGTRCVGIAFTVQYQPVNYIDQVPSGSVIVSSNSGRHDCTVWGDIMTHFALANGIKGTVIDGVARDIDTVINCNYPLFSRGRFMQSAKNRTQLKAVQVPLVIDGITIQPGDLMVCDGSGCVVVPQQLAAEVVLRARAVEQTERRIIEAISSGSTLEQARM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords uncharacterized protein
publication title CRYSTAL STRUCTURE OF uncharacterized protein PSPTO_3204 from Pseudomonas syringae pv. tomato str. DC3000
rcsb
source organism Pseudomonas syringae pv. tomato
total genus 58
structure length 202
sequence length 212
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 3k4iA01
1Q5XA 1NXJA 1VI4A 3C8OA 3NOJA 3K4IA 2YJVA 2PCNA 1J3LA 2YJTA
chains in the Genus database with same CATH superfamily
1Q5XA 3T05A 3FEEA 1XF1A 3FF3A 2HWGA 4OC0A 4JVOA 4NGNA 3S9NA 2XEIA 1CX8A 1M6VB 4CDJA 2C6GA 3D7FA 2D0PA 4MCQA 4OC3A 4TWEA 1JDBC 2HROA 3TLGA 5IB9A 2B0AA 2PCNA 2JBKA 3S9MA 1T36B 3ICUA 5FD8A 4INJA 1BXRB 4OC1A 3SJFA 4C8FA 1ZYMA 4MI1A 2EZAA 3TLGB 3FECA 1KEEB 1C30B 1VBHA 2PVWA 1EZBA 3BI0A 1Y9ZA 4P4FA 1R61A 4J0NA 1GGOA 4JZ0A 4MCRA 3D7HA 4YN3A 4NGPA 3TLAA 3TLEA 4C84A 5JVLA 3BHXA 4NGQA 3KASA 4C8CA 3EZBA 4M8DA 1V6CA 3TLCA 3EZEA 3BXMA 4NGSA 3VTAA 1Z8LA 2AUMA 3KRVA 3U1BA 4P4EA 2OOTA 4P4JA 5JYBA 2XEJA 2D0OA 4MCSA 3SR3A 4CZ1A 5F9MA 1ZRSA 5F1YA 4CDKA 4H1HA 2YJVA 2JBJA 5F5XA 4CO9A 1VBGA 4COBA 3FEDA 2FM4A 3C8OA 2PVVA 3GJZA 3IIBA 4TJXA 1KBLA 4X3RA 4MCPA 1KC7A 3TYXA 2XEGA 3SJEA 2C5QA 3T07A 4EYSA 4W9YA 2CIJA 5D29A 3I74A 2EK8A 4NGMA 1ZL0A 3TLYA 5IR2A 3K9TA 4OC5A 4P4DA 4C9RA 2E28A 3EZAA 2XEFA 3EIFA 4KNGE 4P45A 2EZBA 2EZCA 1EZAA 4NGTA 4IIYA 3G23A 1C3OB 3IWWA 4P44A 4C9UA 3SJGA 4P4BA 2YJTA 2AUNA 5F09A 1VI4A 2MP0A 4JYWA 3K4IA 1JDEA 2OLSA 1CS0B 4OC4A 4MJXA 4LQGA 4C9EA 4C9AA 3TLBA 4E94A 5ELYA 4E5SA 3D7GA 4C8PA 2HI6A 4COGA 1WVMA 3BI1A 2X0SA 3S9LA 2C6CA 1NXJA 4P4IA 2OR4A 3NOJA 1NBWA 2GP4A 3T5MA 4OC2A 4C85A 4C8AA 4OMEA 4C86A 1CE8B 1DIKA 3RBUA 3SJXA 2DIKA 3I6SA 3TLZA 3T0TA 4C8TA 4C9VA 2EK9A 1A9XB 4NGRA 4C8UA 3D7DA 4IIXA 1DE4C 4TJVA 2C6PA 4C99A 5K99A 1J3LA 2R82A
chains in the Genus database with same CATH topology
1Q5XA 1NXJA 1VI4A 3C8OA 3NOJA 3K4IA 2YJVA 2PCNA 1J3LA 2YJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q5X A;  1NXJ A;  1VI4 A;  3C8O A;  3NOJ A;  3K4I A;  2YJV A;  2PCN A;  1J3L A;  2YJT A; 
#chains in the Genus database with same CATH topology
 1Q5X A;  3T05 A;  3FEE A;  1XF1 A;  3FF3 A;  2HWG A;  4OC0 A;  4JVO A;  4NGN A;  3S9N A;  2XEI A;  1CX8 A;  1M6V B;  4CDJ A;  2C6G A;  3D7F A;  2D0P A;  4MCQ A;  4OC3 A;  4TWE A;  1JDB C;  2HRO A;  3TLG A;  5IB9 A;  2B0A A;  2PCN A;  2JBK A;  3S9M A;  1T36 B;  3ICU A;  5FD8 A;  4INJ A;  1BXR B;  4OC1 A;  3SJF A;  4C8F A;  1ZYM A;  4MI1 A;  2EZA A;  3TLG B;  3FEC A;  1KEE B;  1C30 B;  1VBH A;  2PVW A;  1EZB A;  3BI0 A;  1Y9Z A;  4P4F A;  1R61 A;  4J0N A;  1GGO A;  4JZ0 A;  4MCR A;  3D7H A;  4YN3 A;  4NGP A;  3TLA A;  3TLE A;  4C84 A;  5JVL A;  3BHX A;  4NGQ A;  3KAS A;  4C8C A;  3EZB A;  4M8D A;  1V6C A;  3TLC A;  3EZE A;  3BXM A;  4NGS A;  3VTA A;  1Z8L A;  2AUM A;  3KRV A;  3U1B A;  4P4E A;  2OOT A;  4P4J A;  5JYB A;  2XEJ A;  2D0O A;  4MCS A;  3SR3 A;  4CZ1 A;  5F9M A;  1ZRS A;  5F1Y A;  4CDK A;  4H1H A;  2YJV A;  2JBJ A;  5F5X A;  4CO9 A;  1VBG A;  4COB A;  3FED A;  2FM4 A;  3C8O A;  2PVV A;  3GJZ A;  3IIB A;  4TJX A;  1KBL A;  4X3R A;  4MCP A;  1KC7 A;  3TYX A;  2XEG A;  3SJE A;  2C5Q A;  3T07 A;  4EYS A;  4W9Y A;  2CIJ A;  5D29 A;  3I74 A;  2EK8 A;  4NGM A;  1ZL0 A;  3TLY A;  5IR2 A;  3K9T A;  4OC5 A;  4P4D A;  4C9R A;  2E28 A;  3EZA A;  2XEF A;  3EIF A;  4KNG E;  4P45 A;  2EZB A;  2EZC A;  1EZA A;  4NGT A;  4IIY A;  3G23 A;  1C3O B;  3IWW A;  4P44 A;  4C9U A;  3SJG A;  4P4B A;  2YJT A;  2AUN A;  5F09 A;  1VI4 A;  2MP0 A;  4JYW A;  3K4I A;  1JDE A;  2OLS A;  1CS0 B;  4OC4 A;  4MJX A;  4LQG A;  4C9E A;  4C9A A;  3TLB A;  4E94 A;  5ELY A;  4E5S A;  3D7G A;  4C8P A;  2HI6 A;  4COG A;  1WVM A;  3BI1 A;  2X0S A;  3S9L A;  2C6C A;  1NXJ A;  4P4I A;  2OR4 A;  3NOJ A;  1NBW A;  2GP4 A;  3T5M A;  4OC2 A;  4C85 A;  4C8A A;  4OME A;  4C86 A;  1CE8 B;  1DIK A;  3RBU A;  3SJX A;  2DIK A;  3I6S A;  3TLZ A;  3T0T A;  4C8T A;  4C9V A;  2EK9 A;  1A9X B;  4NGR A;  4C8U A;  3D7D A;  4IIX A;  1DE4 C;  4TJV A;  2C6P A;  4C99 A;  5K99 A;  1J3L A;  2R82 A; 
#chains in the Genus database with same CATH homology
 1Q5X A;  1NXJ A;  1VI4 A;  3C8O A;  3NOJ A;  3K4I A;  2YJV A;  2PCN A;  1J3L A;  2YJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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