3K51B

Crystal structure of dcr3-tl1a complex
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
163
structure length
161
Chain Sequence
ETPTYPWRDAEERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Tumor necrosis factor ligand superfamily member 15, secreted
publication title Decoy Strategies: The Structure of TL1A:DcR3 Complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 161
sequence length 163
ec nomenclature
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3k51B02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3k51B01
1ZA3R 4I9XC 4KGQC 2X10A 4YN0A 3QBQB 2HEVR 4FHQA 3MI8D 1SG1X 4GIQR 3ME2R 5BNQR 3MHDD 3U3PA 4BK4A 3X3FA 3URFZ 3U3SA 1D4VA 3THMF 4M4PA 3U3TA 1EXTA 4E4DR 1NCFA 1TNRR 2HEYR 3MBWA 4OD2S 4J6GC 1DU3A 4KGGC 1JMAB 3U3VA 5CIRE 5L36B 3QD6R 3BUKC 5IHLA 1D0GR 1FT4A 3IJ2X 4BK5A 2AW2B 3QO4A 3ME4A 3ALQR 4M4RA 3K51B 4MSVB 2UWIA 4N90R 5DMJA 4RSUD 3TJEF 3WVTA 3FL7A 3U3QA 2H9GR 4MXWR
chains in the Genus database with same CATH superfamily
1ZA3R 2QR6A 4I9XC 4KGQC 2X10A 4YN0A 3QBQB 2HEVR 4FHQA 3MI8D 2E4YA 1SG1X 4GIQR 3ME2R 5BNQR 3MHDD 3U3PA 4BK4A 2E4WA 2E4VA 3URFZ 3X3FA 3U3SA 1D4VA 3THMF 4M4PA 3U3TA 1EXTA 4E4DR 1NCFA 1TNRR 2HEYR 3MBWA 4OD2S 4J6GC 1DU3A 4KGGC 1JMAB 3U3VA 5CIRE 5L36B 3QD6R 2E4UA 3BUKC 5IHLA 1D0GR 1FT4A 3IJ2X 4BK5A 2AW2B 3QO4A 3ME4A 3ALQR 4M4RA 3K51B 4MSVB 2UWIA 4N90R 5DMJA 4RSUD 3TJEF 3WVTA 3FL7A 2E4XA 3U3QA 2H9GR 4MXWR
chains in the Genus database with same CATH topology
1ZA3R 4I9XC 4KGQC 2X10A 4YN0A 3QBQB 2HEVR 4FHQA 3MI8D 1SG1X 4GIQR 3ME2R 5BNQR 3MHDD 3U3PA 4BK4A 3X3FA 3URFZ 3U3SA 1D4VA 3THMF 4M4PA 3U3TA 1EXTA 4E4DR 1NCFA 1TNRR 2HEYR 3MBWA 4OD2S 4J6GC 1DU3A 4KGGC 1JMAB 3U3VA 5CIRE 5L36B 3QD6R 3BUKC 5IHLA 1D0GR 1FT4A 3IJ2X 4BK5A 2AW2B 3QO4A 3ME4A 3ALQR 4M4RA 3K51B 4MSVB 2UWIA 4N90R 5DMJA 4RSUD 3TJEF 3WVTA 3FL7A 3U3QA 2H9GR 4MXWR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZA3 R;  4I9X C;  4KGQ C;  2X10 A;  4YN0 A;  3QBQ B;  2HEV R;  4FHQ A;  3MI8 D;  1SG1 X;  4GIQ R;  3ME2 R;  5BNQ R;  3MHD D;  3U3P A;  4BK4 A;  3X3F A;  3URF Z;  3U3S A;  1D4V A;  3THM F;  4M4P A;  3U3T A;  1EXT A;  4E4D R;  1NCF A;  1TNR R;  2HEY R;  3MBW A;  4OD2 S;  4J6G C;  1DU3 A;  4KGG C;  1JMA B;  3U3V A;  5CIR E;  5L36 B;  3QD6 R;  3BUK C;  5IHL A;  1D0G R;  1FT4 A;  3IJ2 X;  4BK5 A;  2AW2 B;  3QO4 A;  3ME4 A;  3ALQ R;  4M4R A;  3K51 B;  4MSV B;  2UWI A;  4N90 R;  5DMJ A;  4RSU D;  3TJE F;  3WVT A;  3FL7 A;  3U3Q A;  2H9G R;  4MXW R; 
#chains in the Genus database with same CATH topology
 1ZA3 R;  2QR6 A;  4I9X C;  4KGQ C;  2X10 A;  4YN0 A;  3QBQ B;  2HEV R;  4FHQ A;  3MI8 D;  2E4Y A;  1SG1 X;  4GIQ R;  3ME2 R;  5BNQ R;  3MHD D;  3U3P A;  4BK4 A;  2E4W A;  2E4V A;  3URF Z;  3X3F A;  3U3S A;  1D4V A;  3THM F;  4M4P A;  3U3T A;  1EXT A;  4E4D R;  1NCF A;  1TNR R;  2HEY R;  3MBW A;  4OD2 S;  4J6G C;  1DU3 A;  4KGG C;  1JMA B;  3U3V A;  5CIR E;  5L36 B;  3QD6 R;  2E4U A;  3BUK C;  5IHL A;  1D0G R;  1FT4 A;  3IJ2 X;  4BK5 A;  2AW2 B;  3QO4 A;  3ME4 A;  3ALQ R;  4M4R A;  3K51 B;  4MSV B;  2UWI A;  4N90 R;  5DMJ A;  4RSU D;  3TJE F;  3WVT A;  3FL7 A;  2E4X A;  3U3Q A;  2H9G R;  4MXW R; 
#chains in the Genus database with same CATH homology
 1ZA3 R;  4I9X C;  4KGQ C;  2X10 A;  4YN0 A;  3QBQ B;  2HEV R;  4FHQ A;  3MI8 D;  1SG1 X;  4GIQ R;  3ME2 R;  5BNQ R;  3MHD D;  3U3P A;  4BK4 A;  3X3F A;  3URF Z;  3U3S A;  1D4V A;  3THM F;  4M4P A;  3U3T A;  1EXT A;  4E4D R;  1NCF A;  1TNR R;  2HEY R;  3MBW A;  4OD2 S;  4J6G C;  1DU3 A;  4KGG C;  1JMA B;  3U3V A;  5CIR E;  5L36 B;  3QD6 R;  3BUK C;  5IHL A;  1D0G R;  1FT4 A;  3IJ2 X;  4BK5 A;  2AW2 B;  3QO4 A;  3ME4 A;  3ALQ R;  4M4R A;  3K51 B;  4MSV B;  2UWI A;  4N90 R;  5DMJ A;  4RSU D;  3TJE F;  3WVT A;  3FL7 A;  3U3Q A;  2H9G R;  4MXW R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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