3K56A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp beta-s
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
260
structure length
260
Chain Sequence
b'MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 81
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k56A00
1B7BA 3AB4A 4NDPB 2BRXA 2J5TA 3K56A 4A7XA 3L86A 2JJ4A 3C1MA 3QURA 4NDRB 3WWMA 3EK6A 2X2WA 3T7BA 3ZZFA 2RD5A 2R8VA 4AXSA 3K4YA 3D40A 3K52A 3C20A 2J0WA 2BUFA 2WE4A 1OHAA 1GSJA 4JZ8A 2V4YA 3K4OA 3WWNA 2BRIA 2JJXA 3LL9A 2BTYA 4NDOB 3NWYA 2J0XA 1GS5A 3TVIA 2J4KA 1OH9A 2BNFA 3QUOA 3KZFA 1OHBA 4F6TB 2CDQA 3AAWA 2VA1A 3S6KA 3D2PA 3U6UA 3D2MA 3QVFA 4I49A 4OLCA 1Z9DA 2AP9A 4NDPA 4NDQA 1YBDA 3C1NA 2OGXA 3S6HA 3LKKA 4JZ9A 3ZZHA 2WE5A 3QVHA 4Q1TA 3D41A 2J5VA 3ZZGA 2A1FA 2J4JA 4USJA 2R98A 2W21A 4NDOA 2JI5A 2BMUA 2IJ9A 3ZZIA 3AB2A 4NDQB 4F6TA 2AKOA 3L76A 4NDRA 2OGXB 3EK5A 4JZ7A 4AB7A 2E9YA 4KZTA 3QUNA 3LL5A 2BNEA 2J4LA 3B8GA 2BNDA 4A7WA 1E19A 3S6GA 2V5HA 2HMFA 2WXBA
chains in the Genus database with same CATH superfamily
1B7BA 3AB4A 4NDPB 2BRXA 2J5TA 3K56A 4A7XA 3L86A 2JJ4A 3C1MA 3QURA 4NDRB 3WWMA 3EK6A 2X2WA 3T7BA 3ZZFA 2RD5A 2R8VA 4AXSA 3K4YA 3D40A 3K52A 3C20A 2J0WA 2BUFA 2WE4A 1OHAA 1GSJA 4JZ8A 2V4YA 3K4OA 3WWNA 2BRIA 2JJXA 3LL9A 2BTYA 4NDOB 3NWYA 2J0XA 1GS5A 3TVIA 2J4KA 1OH9A 2BNFA 3QUOA 3KZFA 1OHBA 4F6TB 2CDQA 3AAWA 2VA1A 3S6KA 3D2PA 3U6UA 3D2MA 3QVFA 4I49A 4OLCA 1Z9DA 2AP9A 4NDPA 4NDQA 1YBDA 3C1NA 2OGXA 3S6HA 3LKKA 4JZ9A 3ZZHA 2WE5A 3QVHA 4Q1TA 3D41A 2J5VA 3ZZGA 2A1FA 2J4JA 4USJA 2R98A 2W21A 4NDOA 2JI5A 2BMUA 2IJ9A 3ZZIA 3AB2A 4NDQB 4F6TA 2AKOA 3L76A 4NDRA 2OGXB 3EK5A 4JZ7A 4AB7A 2E9YA 4KZTA 3QUNA 3LL5A 2BNEA 2J4LA 3B8GA 2BNDA 4A7WA 1E19A 3S6GA 2V5HA 2HMFA 2WXBA
chains in the Genus database with same CATH topology
1B7BA 3AB4A 4NDPB 2BRXA 2J5TA 3K56A 4A7XA 3L86A 2JJ4A 3C1MA 3QURA 4NDRB 3WWMA 3EK6A 2X2WA 3T7BA 3ZZFA 2RD5A 2R8VA 4AXSA 3K4YA 3D40A 3K52A 3C20A 2J0WA 2BUFA 2WE4A 1OHAA 1GSJA 4JZ8A 2V4YA 3K4OA 3WWNA 2BRIA 2JJXA 3LL9A 2BTYA 4NDOB 3NWYA 2J0XA 1GS5A 3TVIA 2J4KA 1OH9A 2BNFA 3QUOA 3KZFA 1OHBA 4F6TB 2CDQA 3AAWA 2VA1A 3S6KA 3D2PA 3U6UA 3D2MA 3QVFA 4I49A 4OLCA 1Z9DA 2AP9A 4NDPA 4NDQA 1YBDA 3C1NA 2OGXA 3S6HA 3LKKA 4JZ9A 3ZZHA 2WE5A 3QVHA 4Q1TA 3D41A 2J5VA 3ZZGA 2A1FA 2J4JA 4USJA 2R98A 2W21A 4NDOA 2JI5A 2BMUA 2IJ9A 3ZZIA 3AB2A 4NDQB 4F6TA 2AKOA 3L76A 4NDRA 2OGXB 3EK5A 4JZ7A 4AB7A 2E9YA 4KZTA 3QUNA 3LL5A 2BNEA 2J4LA 3B8GA 2BNDA 4A7WA 1E19A 3S6GA 2V5HA 2HMFA 2WXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B7B A;  3AB4 A;  4NDP B;  2BRX A;  2J5T A;  3K56 A;  4A7X A;  3L86 A;  2JJ4 A;  3C1M A;  3QUR A;  4NDR B;  3WWM A;  3EK6 A;  2X2W A;  3T7B A;  3ZZF A;  2RD5 A;  2R8V A;  4AXS A;  3K4Y A;  3D40 A;  3K52 A;  3C20 A;  2J0W A;  2BUF A;  2WE4 A;  1OHA A;  1GSJ A;  4JZ8 A;  2V4Y A;  3K4O A;  3WWN A;  2BRI A;  2JJX A;  3LL9 A;  2BTY A;  4NDO B;  3NWY A;  2J0X A;  1GS5 A;  3TVI A;  2J4K A;  1OH9 A;  2BNF A;  3QUO A;  3KZF A;  1OHB A;  4F6T B;  2CDQ A;  3AAW A;  2VA1 A;  3S6K A;  3D2P A;  3U6U A;  3D2M A;  3QVF A;  4I49 A;  4OLC A;  1Z9D A;  2AP9 A;  4NDP A;  4NDQ A;  1YBD A;  3C1N A;  2OGX A;  3S6H A;  3LKK A;  4JZ9 A;  3ZZH A;  2WE5 A;  3QVH A;  4Q1T A;  3D41 A;  2J5V A;  3ZZG A;  2A1F A;  2J4J A;  4USJ A;  2R98 A;  2W21 A;  4NDO A;  2JI5 A;  2BMU A;  2IJ9 A;  3ZZI A;  3AB2 A;  4NDQ B;  4F6T A;  2AKO A;  3L76 A;  4NDR A;  2OGX B;  3EK5 A;  4JZ7 A;  4AB7 A;  2E9Y A;  4KZT A;  3QUN A;  3LL5 A;  2BNE A;  2J4L A;  3B8G A;  2BND A;  4A7W A;  1E19 A;  3S6G A;  2V5H A;  2HMF A;  2WXB A; 
#chains in the Genus database with same CATH topology
 1B7B A;  3AB4 A;  4NDP B;  2BRX A;  2J5T A;  3K56 A;  4A7X A;  3L86 A;  2JJ4 A;  3C1M A;  3QUR A;  4NDR B;  3WWM A;  3EK6 A;  2X2W A;  3T7B A;  3ZZF A;  2RD5 A;  2R8V A;  4AXS A;  3K4Y A;  3D40 A;  3K52 A;  3C20 A;  2J0W A;  2BUF A;  2WE4 A;  1OHA A;  1GSJ A;  4JZ8 A;  2V4Y A;  3K4O A;  3WWN A;  2BRI A;  2JJX A;  3LL9 A;  2BTY A;  4NDO B;  3NWY A;  2J0X A;  1GS5 A;  3TVI A;  2J4K A;  1OH9 A;  2BNF A;  3QUO A;  3KZF A;  1OHB A;  4F6T B;  2CDQ A;  3AAW A;  2VA1 A;  3S6K A;  3D2P A;  3U6U A;  3D2M A;  3QVF A;  4I49 A;  4OLC A;  1Z9D A;  2AP9 A;  4NDP A;  4NDQ A;  1YBD A;  3C1N A;  2OGX A;  3S6H A;  3LKK A;  4JZ9 A;  3ZZH A;  2WE5 A;  3QVH A;  4Q1T A;  3D41 A;  2J5V A;  3ZZG A;  2A1F A;  2J4J A;  4USJ A;  2R98 A;  2W21 A;  4NDO A;  2JI5 A;  2BMU A;  2IJ9 A;  3ZZI A;  3AB2 A;  4NDQ B;  4F6T A;  2AKO A;  3L76 A;  4NDR A;  2OGX B;  3EK5 A;  4JZ7 A;  4AB7 A;  2E9Y A;  4KZT A;  3QUN A;  3LL5 A;  2BNE A;  2J4L A;  3B8G A;  2BND A;  4A7W A;  1E19 A;  3S6G A;  2V5H A;  2HMF A;  2WXB A; 
#chains in the Genus database with same CATH homology
 1B7B A;  3AB4 A;  4NDP B;  2BRX A;  2J5T A;  3K56 A;  4A7X A;  3L86 A;  2JJ4 A;  3C1M A;  3QUR A;  4NDR B;  3WWM A;  3EK6 A;  2X2W A;  3T7B A;  3ZZF A;  2RD5 A;  2R8V A;  4AXS A;  3K4Y A;  3D40 A;  3K52 A;  3C20 A;  2J0W A;  2BUF A;  2WE4 A;  1OHA A;  1GSJ A;  4JZ8 A;  2V4Y A;  3K4O A;  3WWN A;  2BRI A;  2JJX A;  3LL9 A;  2BTY A;  4NDO B;  3NWY A;  2J0X A;  1GS5 A;  3TVI A;  2J4K A;  1OH9 A;  2BNF A;  3QUO A;  3KZF A;  1OHB A;  4F6T B;  2CDQ A;  3AAW A;  2VA1 A;  3S6K A;  3D2P A;  3U6U A;  3D2M A;  3QVF A;  4I49 A;  4OLC A;  1Z9D A;  2AP9 A;  4NDP A;  4NDQ A;  1YBD A;  3C1N A;  2OGX A;  3S6H A;  3LKK A;  4JZ9 A;  3ZZH A;  2WE5 A;  3QVH A;  4Q1T A;  3D41 A;  2J5V A;  3ZZG A;  2A1F A;  2J4J A;  4USJ A;  2R98 A;  2W21 A;  4NDO A;  2JI5 A;  2BMU A;  2IJ9 A;  3ZZI A;  3AB2 A;  4NDQ B;  4F6T A;  2AKO A;  3L76 A;  4NDR A;  2OGX B;  3EK5 A;  4JZ7 A;  4AB7 A;  2E9Y A;  4KZT A;  3QUN A;  3LL5 A;  2BNE A;  2J4L A;  3B8G A;  2BND A;  4A7W A;  1E19 A;  3S6G A;  2V5H A;  2HMF A;  2WXB A; 
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similar chains in the Genus database (?% sequence similarity)
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