3K56A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp beta-s
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
total genus 81
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k56A00
3C1NA 2BRXA 2JJ4A 3K56A 3EK5A 4F6TB 3TVIA 4F6TA 3D41A 3QUOA 2OGXB 1GSJA 2BNFA 2AP9A 3WWNA 2V5HA 1OHBA 3QUNA 4A7WA 3S6KA 1YBDA 4AXSA 2J4JA 1GS5A 1OH9A 2V4YA 3QURA 3NWYA 4OLCA 2J0WA 1E19A 1Z9DA 2A1FA 3D2MA 1OHAA 3LKKA 2BNDA 2HMFA 4NDRA 3ZZFA 1B7BA 3K4OA 2WE5A 4JZ9A 3ZZGA 3LL9A 4Q1TA 4A7XA 3D2PA 2JI5A 2R8VA 2R98A 3AB2A 2E9YA 3K52A 2RD5A 3D40A 3AAWA 4KZTA 3ZZIA 3WWMA 4I49A 3KZFA 3ZZHA 4JZ8A 2J5VA 2X2WA 2OGXA 2J4KA 2BTYA 4NDOB 2J0XA 2AKOA 2BMUA 2J5TA 2WE4A 2WXBA 2JJXA 4NDPB 4NDQA 2IJ9A 4NDRB 3B8GA 2CDQA 3L76A 2W21A 3C1MA 4NDQB 3S6GA 4AB7A 3S6HA 2BUFA 3QVHA 3QVFA 3T7BA 3C20A 3EK6A 2BRIA 2BNEA 4NDOA 4JZ7A 2VA1A 3L86A 3LL5A 4NDPA 3U6UA 4USJA 3AB4A 2J4LA 3K4YA
chains in the Genus database with same CATH superfamily
3C1NA 2BRXA 2JJ4A 3K56A 3EK5A 4F6TB 3TVIA 4F6TA 3D41A 3QUOA 2OGXB 1GSJA 2BNFA 2AP9A 3WWNA 2V5HA 1OHBA 3QUNA 4A7WA 3S6KA 1YBDA 4AXSA 2J4JA 1GS5A 1OH9A 2V4YA 3QURA 3NWYA 4OLCA 2J0WA 1E19A 1Z9DA 2A1FA 3D2MA 1OHAA 3LKKA 2BNDA 2HMFA 4NDRA 3ZZFA 1B7BA 3K4OA 2WE5A 4JZ9A 3ZZGA 3LL9A 4Q1TA 4A7XA 3D2PA 2JI5A 2R8VA 2R98A 3AB2A 2E9YA 3K52A 2RD5A 3D40A 3AAWA 4KZTA 3ZZIA 3WWMA 4I49A 3KZFA 3ZZHA 4JZ8A 2J5VA 2X2WA 2OGXA 2J4KA 2BTYA 4NDOB 2J0XA 2AKOA 2BMUA 2J5TA 2WE4A 2WXBA 2JJXA 4NDPB 4NDQA 2IJ9A 4NDRB 3B8GA 2CDQA 3L76A 2W21A 3C1MA 4NDQB 3S6GA 4AB7A 3S6HA 2BUFA 3QVHA 3QVFA 3T7BA 3C20A 3EK6A 2BRIA 2BNEA 4NDOA 4JZ7A 2VA1A 3L86A 3LL5A 4NDPA 3U6UA 4USJA 3AB4A 2J4LA 3K4YA
chains in the Genus database with same CATH topology
3C1NA 2BRXA 2JJ4A 3K56A 3EK5A 4F6TB 3TVIA 4F6TA 3D41A 3QUOA 2OGXB 1GSJA 2BNFA 2AP9A 3WWNA 2V5HA 1OHBA 3QUNA 4A7WA 3S6KA 1YBDA 4AXSA 2J4JA 1GS5A 1OH9A 2V4YA 3QURA 3NWYA 4OLCA 2J0WA 1E19A 1Z9DA 2A1FA 3D2MA 1OHAA 3LKKA 2BNDA 2HMFA 4NDRA 3ZZFA 1B7BA 3K4OA 2WE5A 4JZ9A 3ZZGA 3LL9A 4Q1TA 4A7XA 3D2PA 2JI5A 2R8VA 2R98A 3AB2A 2E9YA 3K52A 2RD5A 3D40A 3AAWA 4KZTA 3ZZIA 3WWMA 4I49A 3KZFA 3ZZHA 4JZ8A 2J5VA 2X2WA 2OGXA 2J4KA 2BTYA 4NDOB 2J0XA 2AKOA 2BMUA 2J5TA 2WE4A 2WXBA 2JJXA 4NDPB 4NDQA 2IJ9A 4NDRB 3B8GA 2CDQA 3L76A 2W21A 3C1MA 4NDQB 3S6GA 4AB7A 3S6HA 2BUFA 3QVHA 3QVFA 3T7BA 3C20A 3EK6A 2BRIA 2BNEA 4NDOA 4JZ7A 2VA1A 3L86A 3LL5A 4NDPA 3U6UA 4USJA 3AB4A 2J4LA 3K4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C1N A;  2BRX A;  2JJ4 A;  3K56 A;  3EK5 A;  4F6T B;  3TVI A;  4F6T A;  3D41 A;  3QUO A;  2OGX B;  1GSJ A;  2BNF A;  2AP9 A;  3WWN A;  2V5H A;  1OHB A;  3QUN A;  4A7W A;  3S6K A;  1YBD A;  4AXS A;  2J4J A;  1GS5 A;  1OH9 A;  2V4Y A;  3QUR A;  3NWY A;  4OLC A;  2J0W A;  1E19 A;  1Z9D A;  2A1F A;  3D2M A;  1OHA A;  3LKK A;  2BND A;  2HMF A;  4NDR A;  3ZZF A;  1B7B A;  3K4O A;  2WE5 A;  4JZ9 A;  3ZZG A;  3LL9 A;  4Q1T A;  4A7X A;  3D2P A;  2JI5 A;  2R8V A;  2R98 A;  3AB2 A;  2E9Y A;  3K52 A;  2RD5 A;  3D40 A;  3AAW A;  4KZT A;  3ZZI A;  3WWM A;  4I49 A;  3KZF A;  3ZZH A;  4JZ8 A;  2J5V A;  2X2W A;  2OGX A;  2J4K A;  2BTY A;  4NDO B;  2J0X A;  2AKO A;  2BMU A;  2J5T A;  2WE4 A;  2WXB A;  2JJX A;  4NDP B;  4NDQ A;  2IJ9 A;  4NDR B;  3B8G A;  2CDQ A;  3L76 A;  2W21 A;  3C1M A;  4NDQ B;  3S6G A;  4AB7 A;  3S6H A;  2BUF A;  3QVH A;  3QVF A;  3T7B A;  3C20 A;  3EK6 A;  2BRI A;  2BNE A;  4NDO A;  4JZ7 A;  2VA1 A;  3L86 A;  3LL5 A;  4NDP A;  3U6U A;  4USJ A;  3AB4 A;  2J4L A;  3K4Y A; 
#chains in the Genus database with same CATH topology
 3C1N A;  2BRX A;  2JJ4 A;  3K56 A;  3EK5 A;  4F6T B;  3TVI A;  4F6T A;  3D41 A;  3QUO A;  2OGX B;  1GSJ A;  2BNF A;  2AP9 A;  3WWN A;  2V5H A;  1OHB A;  3QUN A;  4A7W A;  3S6K A;  1YBD A;  4AXS A;  2J4J A;  1GS5 A;  1OH9 A;  2V4Y A;  3QUR A;  3NWY A;  4OLC A;  2J0W A;  1E19 A;  1Z9D A;  2A1F A;  3D2M A;  1OHA A;  3LKK A;  2BND A;  2HMF A;  4NDR A;  3ZZF A;  1B7B A;  3K4O A;  2WE5 A;  4JZ9 A;  3ZZG A;  3LL9 A;  4Q1T A;  4A7X A;  3D2P A;  2JI5 A;  2R8V A;  2R98 A;  3AB2 A;  2E9Y A;  3K52 A;  2RD5 A;  3D40 A;  3AAW A;  4KZT A;  3ZZI A;  3WWM A;  4I49 A;  3KZF A;  3ZZH A;  4JZ8 A;  2J5V A;  2X2W A;  2OGX A;  2J4K A;  2BTY A;  4NDO B;  2J0X A;  2AKO A;  2BMU A;  2J5T A;  2WE4 A;  2WXB A;  2JJX A;  4NDP B;  4NDQ A;  2IJ9 A;  4NDR B;  3B8G A;  2CDQ A;  3L76 A;  2W21 A;  3C1M A;  4NDQ B;  3S6G A;  4AB7 A;  3S6H A;  2BUF A;  3QVH A;  3QVF A;  3T7B A;  3C20 A;  3EK6 A;  2BRI A;  2BNE A;  4NDO A;  4JZ7 A;  2VA1 A;  3L86 A;  3LL5 A;  4NDP A;  3U6U A;  4USJ A;  3AB4 A;  2J4L A;  3K4Y A; 
#chains in the Genus database with same CATH homology
 3C1N A;  2BRX A;  2JJ4 A;  3K56 A;  3EK5 A;  4F6T B;  3TVI A;  4F6T A;  3D41 A;  3QUO A;  2OGX B;  1GSJ A;  2BNF A;  2AP9 A;  3WWN A;  2V5H A;  1OHB A;  3QUN A;  4A7W A;  3S6K A;  1YBD A;  4AXS A;  2J4J A;  1GS5 A;  1OH9 A;  2V4Y A;  3QUR A;  3NWY A;  4OLC A;  2J0W A;  1E19 A;  1Z9D A;  2A1F A;  3D2M A;  1OHA A;  3LKK A;  2BND A;  2HMF A;  4NDR A;  3ZZF A;  1B7B A;  3K4O A;  2WE5 A;  4JZ9 A;  3ZZG A;  3LL9 A;  4Q1T A;  4A7X A;  3D2P A;  2JI5 A;  2R8V A;  2R98 A;  3AB2 A;  2E9Y A;  3K52 A;  2RD5 A;  3D40 A;  3AAW A;  4KZT A;  3ZZI A;  3WWM A;  4I49 A;  3KZF A;  3ZZH A;  4JZ8 A;  2J5V A;  2X2W A;  2OGX A;  2J4K A;  2BTY A;  4NDO B;  2J0X A;  2AKO A;  2BMU A;  2J5T A;  2WE4 A;  2WXB A;  2JJX A;  4NDP B;  4NDQ A;  2IJ9 A;  4NDR B;  3B8G A;  2CDQ A;  3L76 A;  2W21 A;  3C1M A;  4NDQ B;  3S6G A;  4AB7 A;  3S6H A;  2BUF A;  3QVH A;  3QVF A;  3T7B A;  3C20 A;  3EK6 A;  2BRI A;  2BNE A;  4NDO A;  4JZ7 A;  2VA1 A;  3L86 A;  3LL5 A;  4NDP A;  3U6U A;  4USJ A;  3AB4 A;  2J4L A;  3K4Y A; 
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similar chains in the Genus database (?% sequence similarity)
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