3K56A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp beta-s
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 81
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k56A00
3D2MA 4F6TB 2HMFA 3LKKA 3ZZGA 3EK6A 1GS5A 2RD5A 2BRIA 3LL9A 3KZFA 3S6KA 4AB7A 2R98A 4NDOB 2BNEA 3D41A 2J0WA 4F6TA 2J4LA 3AB4A 2BMUA 2V4YA 2WE5A 1OH9A 2W21A 3TVIA 3AAWA 1E19A 4KZTA 2BRXA 1B7BA 2JJXA 4AXSA 2J0XA 1YBDA 2JJ4A 3C1MA 3C1NA 4NDOA 3L86A 2E9YA 3T7BA 3WWMA 2BNFA 3EK5A 3ZZFA 1OHBA 3WWNA 2J4KA 3K4YA 4I49A 4NDQA 3QURA 2J5VA 3QVFA 3QVHA 3LL5A 4NDQB 1Z9DA 3AB2A 2VA1A 2R8VA 4USJA 2BUFA 2WE4A 3S6GA 4JZ9A 2IJ9A 3K52A 2BNDA 4NDRA 3U6UA 2V5HA 4A7XA 1GSJA 2AP9A 2JI5A 4NDRB 2AKOA 2WXBA 2J4JA 4NDPA 4JZ7A 3NWYA 2J5TA 4JZ8A 3K56A 3S6HA 3ZZHA 4Q1TA 3K4OA 2BTYA 4NDPB 2X2WA 3L76A 2OGXA 4OLCA 4A7WA 2A1FA 3ZZIA 2OGXB 3B8GA 3QUOA 3D40A 3D2PA 3C20A 3QUNA 1OHAA 2CDQA
chains in the Genus database with same CATH superfamily
3D2MA 4F6TB 2HMFA 3LKKA 3ZZGA 3EK6A 1GS5A 2RD5A 2BRIA 3LL9A 3KZFA 3S6KA 4AB7A 2R98A 4NDOB 2BNEA 3D41A 2J0WA 4F6TA 2J4LA 3AB4A 2BMUA 2V4YA 2WE5A 1OH9A 2W21A 3TVIA 3AAWA 1E19A 4KZTA 2BRXA 1B7BA 2JJXA 4AXSA 2J0XA 1YBDA 2JJ4A 3C1MA 3C1NA 4NDOA 3L86A 2E9YA 3T7BA 3WWMA 2BNFA 3EK5A 3ZZFA 1OHBA 3WWNA 2J4KA 3K4YA 4I49A 4NDQA 3QURA 2J5VA 3QVFA 3QVHA 3LL5A 4NDQB 1Z9DA 3AB2A 2VA1A 2R8VA 4USJA 2BUFA 2WE4A 3S6GA 4JZ9A 2IJ9A 3K52A 2BNDA 4NDRA 3U6UA 2V5HA 4A7XA 1GSJA 2AP9A 2JI5A 4NDRB 2AKOA 2WXBA 2J4JA 4NDPA 4JZ7A 3NWYA 2J5TA 4JZ8A 3K56A 3S6HA 3ZZHA 4Q1TA 3K4OA 2BTYA 4NDPB 2X2WA 3L76A 2OGXA 4OLCA 4A7WA 2A1FA 3ZZIA 2OGXB 3B8GA 3QUOA 3D40A 3D2PA 3C20A 3QUNA 1OHAA 2CDQA
chains in the Genus database with same CATH topology
3D2MA 4F6TB 2HMFA 3LKKA 3ZZGA 3EK6A 1GS5A 2RD5A 2BRIA 3LL9A 3KZFA 3S6KA 4AB7A 2R98A 4NDOB 2BNEA 3D41A 2J0WA 4F6TA 2J4LA 3AB4A 2BMUA 2V4YA 2WE5A 1OH9A 2W21A 3TVIA 3AAWA 1E19A 4KZTA 2BRXA 1B7BA 2JJXA 4AXSA 2J0XA 1YBDA 2JJ4A 3C1MA 3C1NA 4NDOA 3L86A 2E9YA 3T7BA 3WWMA 2BNFA 3EK5A 3ZZFA 1OHBA 3WWNA 2J4KA 3K4YA 4I49A 4NDQA 3QURA 2J5VA 3QVFA 3QVHA 3LL5A 4NDQB 1Z9DA 3AB2A 2VA1A 2R8VA 4USJA 2BUFA 2WE4A 3S6GA 4JZ9A 2IJ9A 3K52A 2BNDA 4NDRA 3U6UA 2V5HA 4A7XA 1GSJA 2AP9A 2JI5A 4NDRB 2AKOA 2WXBA 2J4JA 4NDPA 4JZ7A 3NWYA 2J5TA 4JZ8A 3K56A 3S6HA 3ZZHA 4Q1TA 3K4OA 2BTYA 4NDPB 2X2WA 3L76A 2OGXA 4OLCA 4A7WA 2A1FA 3ZZIA 2OGXB 3B8GA 3QUOA 3D40A 3D2PA 3C20A 3QUNA 1OHAA 2CDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2M A;  4F6T B;  2HMF A;  3LKK A;  3ZZG A;  3EK6 A;  1GS5 A;  2RD5 A;  2BRI A;  3LL9 A;  3KZF A;  3S6K A;  4AB7 A;  2R98 A;  4NDO B;  2BNE A;  3D41 A;  2J0W A;  4F6T A;  2J4L A;  3AB4 A;  2BMU A;  2V4Y A;  2WE5 A;  1OH9 A;  2W21 A;  3TVI A;  3AAW A;  1E19 A;  4KZT A;  2BRX A;  1B7B A;  2JJX A;  4AXS A;  2J0X A;  1YBD A;  2JJ4 A;  3C1M A;  3C1N A;  4NDO A;  3L86 A;  2E9Y A;  3T7B A;  3WWM A;  2BNF A;  3EK5 A;  3ZZF A;  1OHB A;  3WWN A;  2J4K A;  3K4Y A;  4I49 A;  4NDQ A;  3QUR A;  2J5V A;  3QVF A;  3QVH A;  3LL5 A;  4NDQ B;  1Z9D A;  3AB2 A;  2VA1 A;  2R8V A;  4USJ A;  2BUF A;  2WE4 A;  3S6G A;  4JZ9 A;  2IJ9 A;  3K52 A;  2BND A;  4NDR A;  3U6U A;  2V5H A;  4A7X A;  1GSJ A;  2AP9 A;  2JI5 A;  4NDR B;  2AKO A;  2WXB A;  2J4J A;  4NDP A;  4JZ7 A;  3NWY A;  2J5T A;  4JZ8 A;  3K56 A;  3S6H A;  3ZZH A;  4Q1T A;  3K4O A;  2BTY A;  4NDP B;  2X2W A;  3L76 A;  2OGX A;  4OLC A;  4A7W A;  2A1F A;  3ZZI A;  2OGX B;  3B8G A;  3QUO A;  3D40 A;  3D2P A;  3C20 A;  3QUN A;  1OHA A;  2CDQ A; 
#chains in the Genus database with same CATH topology
 3D2M A;  4F6T B;  2HMF A;  3LKK A;  3ZZG A;  3EK6 A;  1GS5 A;  2RD5 A;  2BRI A;  3LL9 A;  3KZF A;  3S6K A;  4AB7 A;  2R98 A;  4NDO B;  2BNE A;  3D41 A;  2J0W A;  4F6T A;  2J4L A;  3AB4 A;  2BMU A;  2V4Y A;  2WE5 A;  1OH9 A;  2W21 A;  3TVI A;  3AAW A;  1E19 A;  4KZT A;  2BRX A;  1B7B A;  2JJX A;  4AXS A;  2J0X A;  1YBD A;  2JJ4 A;  3C1M A;  3C1N A;  4NDO A;  3L86 A;  2E9Y A;  3T7B A;  3WWM A;  2BNF A;  3EK5 A;  3ZZF A;  1OHB A;  3WWN A;  2J4K A;  3K4Y A;  4I49 A;  4NDQ A;  3QUR A;  2J5V A;  3QVF A;  3QVH A;  3LL5 A;  4NDQ B;  1Z9D A;  3AB2 A;  2VA1 A;  2R8V A;  4USJ A;  2BUF A;  2WE4 A;  3S6G A;  4JZ9 A;  2IJ9 A;  3K52 A;  2BND A;  4NDR A;  3U6U A;  2V5H A;  4A7X A;  1GSJ A;  2AP9 A;  2JI5 A;  4NDR B;  2AKO A;  2WXB A;  2J4J A;  4NDP A;  4JZ7 A;  3NWY A;  2J5T A;  4JZ8 A;  3K56 A;  3S6H A;  3ZZH A;  4Q1T A;  3K4O A;  2BTY A;  4NDP B;  2X2W A;  3L76 A;  2OGX A;  4OLC A;  4A7W A;  2A1F A;  3ZZI A;  2OGX B;  3B8G A;  3QUO A;  3D40 A;  3D2P A;  3C20 A;  3QUN A;  1OHA A;  2CDQ A; 
#chains in the Genus database with same CATH homology
 3D2M A;  4F6T B;  2HMF A;  3LKK A;  3ZZG A;  3EK6 A;  1GS5 A;  2RD5 A;  2BRI A;  3LL9 A;  3KZF A;  3S6K A;  4AB7 A;  2R98 A;  4NDO B;  2BNE A;  3D41 A;  2J0W A;  4F6T A;  2J4L A;  3AB4 A;  2BMU A;  2V4Y A;  2WE5 A;  1OH9 A;  2W21 A;  3TVI A;  3AAW A;  1E19 A;  4KZT A;  2BRX A;  1B7B A;  2JJX A;  4AXS A;  2J0X A;  1YBD A;  2JJ4 A;  3C1M A;  3C1N A;  4NDO A;  3L86 A;  2E9Y A;  3T7B A;  3WWM A;  2BNF A;  3EK5 A;  3ZZF A;  1OHB A;  3WWN A;  2J4K A;  3K4Y A;  4I49 A;  4NDQ A;  3QUR A;  2J5V A;  3QVF A;  3QVH A;  3LL5 A;  4NDQ B;  1Z9D A;  3AB2 A;  2VA1 A;  2R8V A;  4USJ A;  2BUF A;  2WE4 A;  3S6G A;  4JZ9 A;  2IJ9 A;  3K52 A;  2BND A;  4NDR A;  3U6U A;  2V5H A;  4A7X A;  1GSJ A;  2AP9 A;  2JI5 A;  4NDR B;  2AKO A;  2WXB A;  2J4J A;  4NDP A;  4JZ7 A;  3NWY A;  2J5T A;  4JZ8 A;  3K56 A;  3S6H A;  3ZZH A;  4Q1T A;  3K4O A;  2BTY A;  4NDP B;  2X2W A;  3L76 A;  2OGX A;  4OLC A;  4A7W A;  2A1F A;  3ZZI A;  2OGX B;  3B8G A;  3QUO A;  3D40 A;  3D2P A;  3C20 A;  3QUN A;  1OHA A;  2CDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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