3K6MA

Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart.
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
480
structure length
465
Chain Sequence
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondr
publication title The high-resolution structure of pig heart succinyl-CoA:3-oxoacid coenzyme A transferase.
pubmed doi rcsb
molecule tags Transferase
total genus 141
structure length 465
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2009-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3k6mA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3k6mA02
1O9LA 3D3UA 1K6DA 1OOZA 1M3EA 3GK7A 2NRCA 3OXOA 2OASA 1OOYA 3EH7A 1POIB 2HJ0A 2AHVA 3CDKB 4KGBA 5DBNB 3RRLB 3QDQA 2AHWA 2AHUA 3K6MA 1POIA 1OPEA 3DLXA 3CDKA 1XR4A 5DBNA 3RRLA 2NRBA
chains in the Genus database with same CATH superfamily
1O9LA 3D3UA 1K6DA 1OOZA 1M3EA 3GK7A 2NRCA 3OXOA 2OASA 1OOYA 3EH7A 1POIB 2HJ0A 2AHVA 3CDKB 4KGBA 5DBNB 3RRLB 3QDQA 2AHWA 2AHUA 3K6MA 1POIA 1OPEA 3DLXA 3CDKA 1XR4A 5DBNA 3RRLA 2NRBA
chains in the Genus database with same CATH topology
1O9LA 3D3UA 1K6DA 1OOZA 1M3EA 3GK7A 2NRCA 3OXOA 2OASA 1OOYA 3EH7A 1POIB 2HJ0A 2AHVA 3CDKB 4KGBA 5DBNB 3RRLB 3QDQA 2AHWA 2AHUA 3K6MA 1POIA 1OPEA 3DLXA 3CDKA 1XR4A 5DBNA 3RRLA 2NRBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O9L A;  3D3U A;  1K6D A;  1OOZ A;  1M3E A;  3GK7 A;  2NRC A;  3OXO A;  2OAS A;  1OOY A;  3EH7 A;  1POI B;  2HJ0 A;  2AHV A;  3CDK B;  4KGB A;  5DBN B;  3RRL B;  3QDQ A;  2AHW A;  2AHU A;  3K6M A;  1POI A;  1OPE A;  3DLX A;  3CDK A;  1XR4 A;  5DBN A;  3RRL A;  2NRB A; 
#chains in the Genus database with same CATH topology
 1O9L A;  3D3U A;  1K6D A;  1OOZ A;  1M3E A;  3GK7 A;  2NRC A;  3OXO A;  2OAS A;  1OOY A;  3EH7 A;  1POI B;  2HJ0 A;  2AHV A;  3CDK B;  4KGB A;  5DBN B;  3RRL B;  3QDQ A;  2AHW A;  2AHU A;  3K6M A;  1POI A;  1OPE A;  3DLX A;  3CDK A;  1XR4 A;  5DBN A;  3RRL A;  2NRB A; 
#chains in the Genus database with same CATH homology
 1O9L A;  3D3U A;  1K6D A;  1OOZ A;  1M3E A;  3GK7 A;  2NRC A;  3OXO A;  2OAS A;  1OOY A;  3EH7 A;  1POI B;  2HJ0 A;  2AHV A;  3CDK B;  4KGB A;  5DBN B;  3RRL B;  3QDQ A;  2AHW A;  2AHU A;  3K6M A;  1POI A;  1OPE A;  3DLX A;  3CDK A;  1XR4 A;  5DBN A;  3RRL A;  2NRB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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