3K8RA

Crystal structure of protein of unknown function (yp_427503.1) from rhodospirillum rubrum atcc 11170 at 2.75 a resolution
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
85
structure length
85
Chain Sequence
EPRAAKARYDRSSARVIVDLENGCTFAFPPRLAQGLEGASDDQLCAVEILGQGYGLHWETLDVDLSLPGLMAGIFGTKAWMAKRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
publication title Crystal structure of protein of unknown function (YP_427503.1) from Rhodospirillum rubrum ATCC 11170 at 2.75 A resolution
rcsb
source organism Rhodospirillum rubrum atcc 11170
total genus 19
structure length 85
sequence length 85
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10387 DUF2442 Protein of unknown function (DUF2442)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2020.20 Alpha Beta 2-Layer Sandwich NE0471 N-terminal domain-like NE0471 N-terminal domain-like 3k8rA01
3K8RA 2X8NA
chains in the Genus database with same CATH superfamily
4BHFA 3K8RA 2X8NA 4BGKA 4C8RA 2AUWA 3O2GA 3N6WA 4BHIA 4BHGA 3MS5A 4BG1A 3LUUA 4BGMA 4CWDA 4C5WA
chains in the Genus database with same CATH topology
4BHFA 3K8RA 2X8NA 4BGKA 4C8RA 3O2GA 3N6WA 4BHIA 4BHGA 3MS5A 4BG1A 3LUUA 4BGMA 4CWDA 4C5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K8R A;  2X8N A; 
#chains in the Genus database with same CATH topology
 4BHF A;  3K8R A;  2X8N A;  4BGK A;  4C8R A;  2AUW A;  3O2G A;  3N6W A;  4BHI A;  4BHG A;  3MS5 A;  4BG1 A;  3LUU A;  4BGM A;  4CWD A;  4C5W A; 
#chains in the Genus database with same CATH homology
 4BHF A;  3K8R A;  2X8N A;  4BGK A;  4C8R A;  3O2G A;  3N6W A;  4BHI A;  4BHG A;  3MS5 A;  4BG1 A;  3LUU A;  4BGM A;  4CWD A;  4C5W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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