3KATA

Crystal structure of the card domain of the human nlrp1 protein, northeast structural genomics consortium target hr3486e
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
84
structure length
84
Chain Sequence
LHFVDQYREQLIARVTSVEVVLDKLHGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
molecule keywords NACHT, LRR and PYD domains-containing protein 1
publication title Northeast Structural Genomics Consortium Target HR3486E
rcsb
source organism Homo sapiens
total genus 21
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3katA00
4LWDA 3YGSP 3EZQA 1D2ZB 4O6XA 1FADA 2HM2Q 2G7RA 1C15A 4ZBWA 1NGRA 2O71A 3EZQB 4JQWA 2DO9A 3CRDA 1E3YA 4N1KA 2DBFA 1YGOA 2B1WA 2YU0A 4O9FA 2OF5A 3MOPK 4N1LA 2L9MA 2YGSA 2N7ZA 4M9SA 4F44A 1WMGA 2MS7A 2A5YB 1PN5A 2DBDA 2MS8A 4P4HA 4N1JA 2M5VA 2MPCA 4E9MA 2DBGA 3CL3A 1CY5A 1N3KA 2MB9A 2LS7A 1DGNA 4QOBA 4NQKA 1UCPA 2MN4A 2GF5A 2N00A 2NZ7A 4IZ5E 2LWDA 3MOPG 4O7QA 2N1FA 3LQRA 2LWEA 2L6AA 3MOPA 2NAQA 2N80A 1ICHA 4A2QA 4IZ7B 1Z6TA 3QF2A 1A1ZA 2A9IA 2BBZA 2VGQA 2F1SA 4FH0A 4JUPA 3T6PA 4RHWA 3KATA 4M9XA 4RHWE 4UZ0A 1E41A 3J6JA 4M9ZA 2N83A 2YQFA 4P4HI 4A2WA 2NSNA 1WH4A 2BBRA 2KN6A 4DWNA 3YGSC 2OF5H 2IB1A 1WXPA 2D96A 4D8OA 1DDFA 1A1WA 3LQQA 2YVIA 2DBHA 1CWWA 4IZAB 2N97A 1D2ZA 4EWIA 2KM6A 3J63A 2P1HA 4O9LA 4F42A 4I16A
chains in the Genus database with same CATH superfamily
4LWDA 3YGSP 3EZQA 1D2ZB 4O6XA 1FADA 2HM2Q 2G7RA 1C15A 4ZBWA 1NGRA 2O71A 3EZQB 4JQWA 2DO9A 3CRDA 1E3YA 4N1KA 2DBFA 1YGOA 2B1WA 2YU0A 4O9FA 2OF5A 3MOPK 4N1LA 2L9MA 2YGSA 2N7ZA 4M9SA 4F44A 1WMGA 2MS7A 2A5YB 1PN5A 2DBDA 2MS8A 4P4HA 4N1JA 2M5VA 2MPCA 4E9MA 2DBGA 3CL3A 1CY5A 1N3KA 2MB9A 2LS7A 1DGNA 4QOBA 4NQKA 1UCPA 2MN4A 2GF5A 2N00A 2NZ7A 4IZ5E 2LWDA 3MOPG 4O7QA 2N1FA 3LQRA 2LWEA 2L6AA 3MOPA 2NAQA 2N80A 1ICHA 4A2QA 4IZ7B 1Z6TA 3QF2A 1A1ZA 2A9IA 2BBZA 2VGQA 2F1SA 4FH0A 4JUPA 3T6PA 4RHWA 3KATA 4M9XA 4RHWE 4UZ0A 1E41A 3J6JA 2XV9A 4M9ZA 2N83A 2YQFA 4P4HI 4A2WA 2NSNA 1WH4A 2BBRA 2KN6A 4DWNA 3YGSC 2OF5H 2IB1A 1WXPA 2D96A 4D8OA 1DDFA 1A1WA 3LQQA 2YVIA 2MJMA 2DBHA 1CWWA 4IZAB 2N97A 1D2ZA 4EWIA 2KM6A 3J63A 2P1HA 4O9LA 4F42A 4I16A
chains in the Genus database with same CATH topology
4LWDA 3YGSP 3EZQA 1D2ZB 4O6XA 1FADA 2HM2Q 2G7RA 1C15A 4ZBWA 1NGRA 2O71A 3EZQB 4JQWA 2DO9A 3CRDA 1E3YA 4N1KA 2DBFA 1YGOA 2B1WA 2YU0A 4O9FA 2OF5A 3MOPK 4N1LA 2L9MA 2YGSA 2N7ZA 4M9SA 4F44A 1WMGA 2MS7A 2A5YB 1PN5A 2DBDA 2MS8A 4P4HA 4N1JA 2M5VA 2MPCA 4E9MA 2DBGA 3CL3A 1CY5A 1N3KA 2MB9A 2LS7A 1DGNA 4QOBA 4NQKA 1UCPA 2MN4A 2GF5A 2N00A 2NZ7A 4IZ5E 2LWDA 3MOPG 4O7QA 2N1FA 3LQRA 2LWEA 2L6AA 3MOPA 2NAQA 2N80A 1ICHA 4A2QA 4IZ7B 1Z6TA 3QF2A 1A1ZA 2A9IA 2BBZA 2VGQA 2F1SA 4FH0A 4JUPA 3T6PA 4RHWA 3KATA 4M9XA 4RHWE 4UZ0A 1E41A 3J6JA 2XV9A 4M9ZA 2N83A 2YQFA 4P4HI 4A2WA 2NSNA 1WH4A 2BBRA 2KN6A 4DWNA 3YGSC 2OF5H 2IB1A 1WXPA 2D96A 4D8OA 1DDFA 1A1WA 3LQQA 2YVIA 2MJMA 2DBHA 1CWWA 4IZAB 2N97A 1D2ZA 4EWIA 2KM6A 3J63A 2P1HA 4O9LA 4F42A 4I16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LWD A;  3YGS P;  3EZQ A;  1D2Z B;  4O6X A;  1FAD A;  2HM2 Q;  2G7R A;  1C15 A;  4ZBW A;  1NGR A;  2O71 A;  3EZQ B;  4JQW A;  2DO9 A;  3CRD A;  1E3Y A;  4N1K A;  2DBF A;  1YGO A;  2B1W A;  2YU0 A;  4O9F A;  2OF5 A;  3MOP K;  4N1L A;  2L9M A;  2YGS A;  2N7Z A;  4M9S A;  4F44 A;  1WMG A;  2MS7 A;  2A5Y B;  1PN5 A;  2DBD A;  2MS8 A;  4P4H A;  4N1J A;  2M5V A;  2MPC A;  4E9M A;  2DBG A;  3CL3 A;  1CY5 A;  1N3K A;  2MB9 A;  2LS7 A;  1DGN A;  4QOB A;  4NQK A;  1UCP A;  2MN4 A;  2GF5 A;  2N00 A;  2NZ7 A;  4IZ5 E;  2LWD A;  3MOP G;  4O7Q A;  2N1F A;  3LQR A;  2LWE A;  2L6A A;  3MOP A;  2NAQ A;  2N80 A;  1ICH A;  4A2Q A;  4IZ7 B;  1Z6T A;  3QF2 A;  1A1Z A;  2A9I A;  2BBZ A;  2VGQ A;  2F1S A;  4FH0 A;  4JUP A;  3T6P A;  4RHW A;  3KAT A;  4M9X A;  4RHW E;  4UZ0 A;  1E41 A;  3J6J A;  4M9Z A;  2N83 A;  2YQF A;  4P4H I;  4A2W A;  2NSN A;  1WH4 A;  2BBR A;  2KN6 A;  4DWN A;  3YGS C;  2OF5 H;  2IB1 A;  1WXP A;  2D96 A;  4D8O A;  1DDF A;  1A1W A;  3LQQ A;  2YVI A;  2DBH A;  1CWW A;  4IZA B;  2N97 A;  1D2Z A;  4EWI A;  2KM6 A;  3J63 A;  2P1H A;  4O9L A;  4F42 A;  4I16 A; 
#chains in the Genus database with same CATH topology
 4LWD A;  3YGS P;  3EZQ A;  1D2Z B;  4O6X A;  1FAD A;  2HM2 Q;  2G7R A;  1C15 A;  4ZBW A;  1NGR A;  2O71 A;  3EZQ B;  4JQW A;  2DO9 A;  3CRD A;  1E3Y A;  4N1K A;  2DBF A;  1YGO A;  2B1W A;  2YU0 A;  4O9F A;  2OF5 A;  3MOP K;  4N1L A;  2L9M A;  2YGS A;  2N7Z A;  4M9S A;  4F44 A;  1WMG A;  2MS7 A;  2A5Y B;  1PN5 A;  2DBD A;  2MS8 A;  4P4H A;  4N1J A;  2M5V A;  2MPC A;  4E9M A;  2DBG A;  3CL3 A;  1CY5 A;  1N3K A;  2MB9 A;  2LS7 A;  1DGN A;  4QOB A;  4NQK A;  1UCP A;  2MN4 A;  2GF5 A;  2N00 A;  2NZ7 A;  4IZ5 E;  2LWD A;  3MOP G;  4O7Q A;  2N1F A;  3LQR A;  2LWE A;  2L6A A;  3MOP A;  2NAQ A;  2N80 A;  1ICH A;  4A2Q A;  4IZ7 B;  1Z6T A;  3QF2 A;  1A1Z A;  2A9I A;  2BBZ A;  2VGQ A;  2F1S A;  4FH0 A;  4JUP A;  3T6P A;  4RHW A;  3KAT A;  4M9X A;  4RHW E;  4UZ0 A;  1E41 A;  3J6J A;  2XV9 A;  4M9Z A;  2N83 A;  2YQF A;  4P4H I;  4A2W A;  2NSN A;  1WH4 A;  2BBR A;  2KN6 A;  4DWN A;  3YGS C;  2OF5 H;  2IB1 A;  1WXP A;  2D96 A;  4D8O A;  1DDF A;  1A1W A;  3LQQ A;  2YVI A;  2MJM A;  2DBH A;  1CWW A;  4IZA B;  2N97 A;  1D2Z A;  4EWI A;  2KM6 A;  3J63 A;  2P1H A;  4O9L A;  4F42 A;  4I16 A; 
#chains in the Genus database with same CATH homology
 4LWD A;  3YGS P;  3EZQ A;  1D2Z B;  4O6X A;  1FAD A;  2HM2 Q;  2G7R A;  1C15 A;  4ZBW A;  1NGR A;  2O71 A;  3EZQ B;  4JQW A;  2DO9 A;  3CRD A;  1E3Y A;  4N1K A;  2DBF A;  1YGO A;  2B1W A;  2YU0 A;  4O9F A;  2OF5 A;  3MOP K;  4N1L A;  2L9M A;  2YGS A;  2N7Z A;  4M9S A;  4F44 A;  1WMG A;  2MS7 A;  2A5Y B;  1PN5 A;  2DBD A;  2MS8 A;  4P4H A;  4N1J A;  2M5V A;  2MPC A;  4E9M A;  2DBG A;  3CL3 A;  1CY5 A;  1N3K A;  2MB9 A;  2LS7 A;  1DGN A;  4QOB A;  4NQK A;  1UCP A;  2MN4 A;  2GF5 A;  2N00 A;  2NZ7 A;  4IZ5 E;  2LWD A;  3MOP G;  4O7Q A;  2N1F A;  3LQR A;  2LWE A;  2L6A A;  3MOP A;  2NAQ A;  2N80 A;  1ICH A;  4A2Q A;  4IZ7 B;  1Z6T A;  3QF2 A;  1A1Z A;  2A9I A;  2BBZ A;  2VGQ A;  2F1S A;  4FH0 A;  4JUP A;  3T6P A;  4RHW A;  3KAT A;  4M9X A;  4RHW E;  4UZ0 A;  1E41 A;  3J6J A;  2XV9 A;  4M9Z A;  2N83 A;  2YQF A;  4P4H I;  4A2W A;  2NSN A;  1WH4 A;  2BBR A;  2KN6 A;  4DWN A;  3YGS C;  2OF5 H;  2IB1 A;  1WXP A;  2D96 A;  4D8O A;  1DDF A;  1A1W A;  3LQQ A;  2YVI A;  2MJM A;  2DBH A;  1CWW A;  4IZA B;  2N97 A;  1D2Z A;  4EWI A;  2KM6 A;  3J63 A;  2P1H A;  4O9L A;  4F42 A;  4I16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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