3KD8A

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
Knots found
sequence length
396
structure length
367
Chain Sequence
MKSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISPDTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPGSNYRGKIEKAVDLTSSHDFVLVNIKATGNYPLKRDVIEDIDRAMEPLKSIGDHAVICVTGDGDPVPIVFYTDGVMNDGVHLFDELSSASGSLRITSYNVMDILMQLAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Cofactor-Independent Phosphoglycerate mutase from Thermoplasma Acidophilum DSM 1728
rcsb
source organism Thermoplasma acidophilum
molecule tags Isomerase
total genus 115
structure length 367
sequence length 396
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3kd8A01
1EQJA 3BDHA 3MK0A 3M8WA 1EW2A 1AJCA 5TJ3A 4MY4A 4CXUA 5DLWA 5LRNA 2W5SA 1AJDA 1ELZA 3TWZA 3NKOA 1Y6VA 3UN2A 3UO0A 1ANIA 2VQRA 2W8SA 2W5TA 4MHXA 1EW9A 2IUCA 2QZUA 4GTYA 4LR2A 1B8JA 3BDGB 5IJSA 5LIAA 3NKRA 3BDGA 4LRCA 2GA3A 1KH4A 2W5XA 4LR7A 3B5QA 2D1GA 3UN5A 2IFYA 5HRTA 1N2KA 4CYRA 4GTZA 4GTXA 3SZZA 1E33P 4LQYA 3Q3QA 4B56A 4FDJA 1KHKA 4CYSA 4LR9A 4UORA 4CXKA 3TX0A 5DLVA 4UPKA 4GTWA 4NWXA 5EGEA 2W5QA 2W5VA 2GLQA 5L0EA 1E1ZP 4KAVA 2XRGA 5K4PA 3SZYA 3ED4A 2ANHA 5EGHA 1K7HA 3T02A 3TG0A 3IGYB 1ELYA 5INHA 3NKPA 1EJJA 3OT9A 4ZG9A 4LREA 5LRMA 3WAVA 3A52A 3E2DA 3DPCA 4ZGAA 4UPLA 4MIVA 3KD8A 4FDIA 1E3CP 5DLTA 1KH9A 1HJKA 3WBHA 4KJDA 5GOVA 3WAWA 4LR8A 2W5WA 4TN0A 3CMRA 2W5RA 1KH5A 4KM4A 1ANJA 4YR1A 1ZEDA 3NKQA 3T00A 4UPHA 1O99A 1SHQA 3WAXA 2XR9A 2GSNA 3IGZB 4UOPA 4CXSA 1EW8A 1ED8A 3MK1A 1EI6A 5AJ9A 3UN3A 3NVLA 1ZEBA 4LRFA 4ZG7A 2RH6A 4N7TA 1KHJA 4LRAA 1O98A 3NKNA 3UNYA 1ELXA 2ZKTA 5GRRA 1URBA 1ZEFA 3BDFA 3LXQA 3MK2A 2X98A 5KXAA 4KJGA 1HDHA 1KHLA 5IJQA 4UPIA 1ALKA 3DYCA 3WAYA 5L0KA 4NWJA 3NKMA 1N2LA 4LRBA 3M8ZA 4ZG6A 5L0BA 3M7VA 5LQQA 1SHNA 1AJBA 1HQAA 2IUCB 4QAXA 1KH7A 2GSOA 3M8YA 1ALJA 5C66A 1ALIA 2W8DA 1KHNA 2G9YA 4KAYA 3T01A 1E2SP 2GSUA 4LRDA 1FSUA 3IDDA 1P49A 1URAA 1AJAA 1AUKA 4UOOA 1Y7AA 1ED9A 1ALHA
chains in the Genus database with same CATH superfamily
1EQJA 3BDHA 3MK0A 3M8WA 1EW2A 1AJCA 5TJ3A 4MY4A 4CXUA 5DLWA 5LRNA 2W5SA 1AJDA 1ELZA 3TWZA 3NKOA 1Y6VA 3UN2A 3UO0A 1ANIA 2VQRA 2W8SA 2W5TA 4MHXA 1EW9A 2IUCA 2QZUA 4GTYA 4LR2A 1B8JA 3BDGB 5IJSA 5LIAA 3NKRA 3BDGA 4LRCA 2GA3A 1KH4A 2W5XA 4LR7A 3B5QA 2D1GA 3UN5A 2IFYA 5HRTA 1N2KA 4CYRA 4GTZA 4GTXA 3SZZA 1E33P 4LQYA 3Q3QA 4B56A 4FDJA 1KHKA 4CYSA 4LR9A 4UORA 4CXKA 3TX0A 5DLVA 4UPKA 4GTWA 4NWXA 5EGEA 2W5QA 2W5VA 2GLQA 5L0EA 1E1ZP 4KAVA 2XRGA 5K4PA 3SZYA 3ED4A 2ANHA 5EGHA 1K7HA 3T02A 3TG0A 3IGYB 1ELYA 5INHA 3NKPA 1EJJA 3OT9A 4ZG9A 4LREA 5LRMA 3WAVA 3A52A 3E2DA 3DPCA 4ZGAA 4UPLA 4MIVA 3KD8A 4FDIA 1E3CP 5DLTA 1KH9A 1HJKA 3WBHA 4KJDA 5GOVA 3WAWA 4LR8A 2W5WA 4TN0A 3CMRA 2W5RA 1KH5A 4KM4A 1ANJA 4YR1A 1ZEDA 3NKQA 3T00A 4UPHA 1O99A 1SHQA 3WAXA 2XR9A 2GSNA 3IGZB 4UOPA 4CXSA 1EW8A 1ED8A 3MK1A 1EI6A 5AJ9A 3UN3A 3NVLA 1ZEBA 4LRFA 4ZG7A 2RH6A 4N7TA 1KHJA 4LRAA 1O98A 3NKNA 3UNYA 1ELXA 2ZKTA 5GRRA 1URBA 1ZEFA 3BDFA 3LXQA 3MK2A 2X98A 5KXAA 4KJGA 1HDHA 1KHLA 5IJQA 4UPIA 1ALKA 3DYCA 3WAYA 5L0KA 4NWJA 3NKMA 1N2LA 4LRBA 3M8ZA 4ZG6A 5L0BA 3M7VA 5LQQA 1SHNA 1AJBA 1HQAA 2IUCB 4QAXA 1KH7A 2GSOA 3M8YA 1ALJA 5C66A 1ALIA 2W8DA 1KHNA 2G9YA 4KAYA 3T01A 1E2SP 2GSUA 4LRDA 1FSUA 3IDDA 1P49A 1URAA 1AJAA 1AUKA 4UOOA 1Y7AA 1ED9A 1ALHA
chains in the Genus database with same CATH topology
1EQJA 3BDHA 3MK0A 3M8WA 1EW2A 1AJCA 5TJ3A 4MY4A 4CXUA 5DLWA 5LRNA 2W5SA 1AJDA 1ELZA 3TWZA 3NKOA 1Y6VA 3UN2A 3UO0A 1ANIA 2VQRA 2W8SA 2W5TA 4MHXA 1EW9A 2IUCA 2QZUA 4GTYA 4LR2A 1B8JA 3BDGB 5IJSA 5LIAA 3NKRA 3BDGA 4LRCA 2GA3A 1KH4A 2W5XA 4LR7A 3B5QA 2D1GA 3UN5A 2IFYA 5HRTA 1N2KA 4CYRA 4GTZA 4GTXA 3SZZA 1E33P 4LQYA 3Q3QA 4B56A 4FDJA 1KHKA 4CYSA 4LR9A 4UORA 4CXKA 3TX0A 5DLVA 4UPKA 4GTWA 4NWXA 5EGEA 2W5QA 2W5VA 2GLQA 5L0EA 1E1ZP 4KAVA 2XRGA 5K4PA 3SZYA 3ED4A 2ANHA 5EGHA 1K7HA 3T02A 3TG0A 3IGYB 1ELYA 5INHA 3NKPA 1EJJA 3OT9A 4ZG9A 4LREA 5LRMA 3WAVA 3A52A 3E2DA 3DPCA 4ZGAA 4UPLA 4MIVA 3KD8A 4FDIA 1E3CP 5DLTA 1KH9A 1HJKA 3WBHA 4KJDA 5GOVA 3WAWA 4LR8A 2W5WA 4TN0A 3CMRA 2W5RA 1KH5A 4KM4A 1ANJA 4YR1A 1ZEDA 3NKQA 3T00A 4UPHA 1O99A 1SHQA 3WAXA 2XR9A 2GSNA 3IGZB 4UOPA 4CXSA 1EW8A 1ED8A 3MK1A 1EI6A 5AJ9A 3UN3A 3NVLA 1ZEBA 4LRFA 4ZG7A 2RH6A 4N7TA 1KHJA 4LRAA 1O98A 3NKNA 3UNYA 1ELXA 2ZKTA 5GRRA 1URBA 1ZEFA 3BDFA 3LXQA 3MK2A 2X98A 5KXAA 4KJGA 1HDHA 1KHLA 5IJQA 4UPIA 1ALKA 3DYCA 3WAYA 5L0KA 4NWJA 3NKMA 1N2LA 4LRBA 3M8ZA 4ZG6A 5L0BA 3M7VA 5LQQA 1SHNA 1AJBA 1HQAA 2IUCB 4QAXA 1KH7A 2GSOA 3M8YA 1ALJA 5C66A 1ALIA 2W8DA 1KHNA 2G9YA 4KAYA 3T01A 1E2SP 2GSUA 4LRDA 1FSUA 3IDDA 1P49A 1URAA 1AJAA 1AUKA 4UOOA 1Y7AA 1ED9A 1ALHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EQJ A;  3BDH A;  3MK0 A;  3M8W A;  1EW2 A;  1AJC A;  5TJ3 A;  4MY4 A;  4CXU A;  5DLW A;  5LRN A;  2W5S A;  1AJD A;  1ELZ A;  3TWZ A;  3NKO A;  1Y6V A;  3UN2 A;  3UO0 A;  1ANI A;  2VQR A;  2W8S A;  2W5T A;  4MHX A;  1EW9 A;  2IUC A;  2QZU A;  4GTY A;  4LR2 A;  1B8J A;  3BDG B;  5IJS A;  5LIA A;  3NKR A;  3BDG A;  4LRC A;  2GA3 A;  1KH4 A;  2W5X A;  4LR7 A;  3B5Q A;  2D1G A;  3UN5 A;  2IFY A;  5HRT A;  1N2K A;  4CYR A;  4GTZ A;  4GTX A;  3SZZ A;  1E33 P;  4LQY A;  3Q3Q A;  4B56 A;  4FDJ A;  1KHK A;  4CYS A;  4LR9 A;  4UOR A;  4CXK A;  3TX0 A;  5DLV A;  4UPK A;  4GTW A;  4NWX A;  5EGE A;  2W5Q A;  2W5V A;  2GLQ A;  5L0E A;  1E1Z P;  4KAV A;  2XRG A;  5K4P A;  3SZY A;  3ED4 A;  2ANH A;  5EGH A;  1K7H A;  3T02 A;  3TG0 A;  3IGY B;  1ELY A;  5INH A;  3NKP A;  1EJJ A;  3OT9 A;  4ZG9 A;  4LRE A;  5LRM A;  3WAV A;  3A52 A;  3E2D A;  3DPC A;  4ZGA A;  4UPL A;  4MIV A;  3KD8 A;  4FDI A;  1E3C P;  5DLT A;  1KH9 A;  1HJK A;  3WBH A;  4KJD A;  5GOV A;  3WAW A;  4LR8 A;  2W5W A;  4TN0 A;  3CMR A;  2W5R A;  1KH5 A;  4KM4 A;  1ANJ A;  4YR1 A;  1ZED A;  3NKQ A;  3T00 A;  4UPH A;  1O99 A;  1SHQ A;  3WAX A;  2XR9 A;  2GSN A;  3IGZ B;  4UOP A;  4CXS A;  1EW8 A;  1ED8 A;  3MK1 A;  1EI6 A;  5AJ9 A;  3UN3 A;  3NVL A;  1ZEB A;  4LRF A;  4ZG7 A;  2RH6 A;  4N7T A;  1KHJ A;  4LRA A;  1O98 A;  3NKN A;  3UNY A;  1ELX A;  2ZKT A;  5GRR A;  1URB A;  1ZEF A;  3BDF A;  3LXQ A;  3MK2 A;  2X98 A;  5KXA A;  4KJG A;  1HDH A;  1KHL A;  5IJQ A;  4UPI A;  1ALK A;  3DYC A;  3WAY A;  5L0K A;  4NWJ A;  3NKM A;  1N2L A;  4LRB A;  3M8Z A;  4ZG6 A;  5L0B A;  3M7V A;  5LQQ A;  1SHN A;  1AJB A;  1HQA A;  2IUC B;  4QAX A;  1KH7 A;  2GSO A;  3M8Y A;  1ALJ A;  5C66 A;  1ALI A;  2W8D A;  1KHN A;  2G9Y A;  4KAY A;  3T01 A;  1E2S P;  2GSU A;  4LRD A;  1FSU A;  3IDD A;  1P49 A;  1URA A;  1AJA A;  1AUK A;  4UOO A;  1Y7A A;  1ED9 A;  1ALH A; 
#chains in the Genus database with same CATH topology
 1EQJ A;  3BDH A;  3MK0 A;  3M8W A;  1EW2 A;  1AJC A;  5TJ3 A;  4MY4 A;  4CXU A;  5DLW A;  5LRN A;  2W5S A;  1AJD A;  1ELZ A;  3TWZ A;  3NKO A;  1Y6V A;  3UN2 A;  3UO0 A;  1ANI A;  2VQR A;  2W8S A;  2W5T A;  4MHX A;  1EW9 A;  2IUC A;  2QZU A;  4GTY A;  4LR2 A;  1B8J A;  3BDG B;  5IJS A;  5LIA A;  3NKR A;  3BDG A;  4LRC A;  2GA3 A;  1KH4 A;  2W5X A;  4LR7 A;  3B5Q A;  2D1G A;  3UN5 A;  2IFY A;  5HRT A;  1N2K A;  4CYR A;  4GTZ A;  4GTX A;  3SZZ A;  1E33 P;  4LQY A;  3Q3Q A;  4B56 A;  4FDJ A;  1KHK A;  4CYS A;  4LR9 A;  4UOR A;  4CXK A;  3TX0 A;  5DLV A;  4UPK A;  4GTW A;  4NWX A;  5EGE A;  2W5Q A;  2W5V A;  2GLQ A;  5L0E A;  1E1Z P;  4KAV A;  2XRG A;  5K4P A;  3SZY A;  3ED4 A;  2ANH A;  5EGH A;  1K7H A;  3T02 A;  3TG0 A;  3IGY B;  1ELY A;  5INH A;  3NKP A;  1EJJ A;  3OT9 A;  4ZG9 A;  4LRE A;  5LRM A;  3WAV A;  3A52 A;  3E2D A;  3DPC A;  4ZGA A;  4UPL A;  4MIV A;  3KD8 A;  4FDI A;  1E3C P;  5DLT A;  1KH9 A;  1HJK A;  3WBH A;  4KJD A;  5GOV A;  3WAW A;  4LR8 A;  2W5W A;  4TN0 A;  3CMR A;  2W5R A;  1KH5 A;  4KM4 A;  1ANJ A;  4YR1 A;  1ZED A;  3NKQ A;  3T00 A;  4UPH A;  1O99 A;  1SHQ A;  3WAX A;  2XR9 A;  2GSN A;  3IGZ B;  4UOP A;  4CXS A;  1EW8 A;  1ED8 A;  3MK1 A;  1EI6 A;  5AJ9 A;  3UN3 A;  3NVL A;  1ZEB A;  4LRF A;  4ZG7 A;  2RH6 A;  4N7T A;  1KHJ A;  4LRA A;  1O98 A;  3NKN A;  3UNY A;  1ELX A;  2ZKT A;  5GRR A;  1URB A;  1ZEF A;  3BDF A;  3LXQ A;  3MK2 A;  2X98 A;  5KXA A;  4KJG A;  1HDH A;  1KHL A;  5IJQ A;  4UPI A;  1ALK A;  3DYC A;  3WAY A;  5L0K A;  4NWJ A;  3NKM A;  1N2L A;  4LRB A;  3M8Z A;  4ZG6 A;  5L0B A;  3M7V A;  5LQQ A;  1SHN A;  1AJB A;  1HQA A;  2IUC B;  4QAX A;  1KH7 A;  2GSO A;  3M8Y A;  1ALJ A;  5C66 A;  1ALI A;  2W8D A;  1KHN A;  2G9Y A;  4KAY A;  3T01 A;  1E2S P;  2GSU A;  4LRD A;  1FSU A;  3IDD A;  1P49 A;  1URA A;  1AJA A;  1AUK A;  4UOO A;  1Y7A A;  1ED9 A;  1ALH A; 
#chains in the Genus database with same CATH homology
 1EQJ A;  3BDH A;  3MK0 A;  3M8W A;  1EW2 A;  1AJC A;  5TJ3 A;  4MY4 A;  4CXU A;  5DLW A;  5LRN A;  2W5S A;  1AJD A;  1ELZ A;  3TWZ A;  3NKO A;  1Y6V A;  3UN2 A;  3UO0 A;  1ANI A;  2VQR A;  2W8S A;  2W5T A;  4MHX A;  1EW9 A;  2IUC A;  2QZU A;  4GTY A;  4LR2 A;  1B8J A;  3BDG B;  5IJS A;  5LIA A;  3NKR A;  3BDG A;  4LRC A;  2GA3 A;  1KH4 A;  2W5X A;  4LR7 A;  3B5Q A;  2D1G A;  3UN5 A;  2IFY A;  5HRT A;  1N2K A;  4CYR A;  4GTZ A;  4GTX A;  3SZZ A;  1E33 P;  4LQY A;  3Q3Q A;  4B56 A;  4FDJ A;  1KHK A;  4CYS A;  4LR9 A;  4UOR A;  4CXK A;  3TX0 A;  5DLV A;  4UPK A;  4GTW A;  4NWX A;  5EGE A;  2W5Q A;  2W5V A;  2GLQ A;  5L0E A;  1E1Z P;  4KAV A;  2XRG A;  5K4P A;  3SZY A;  3ED4 A;  2ANH A;  5EGH A;  1K7H A;  3T02 A;  3TG0 A;  3IGY B;  1ELY A;  5INH A;  3NKP A;  1EJJ A;  3OT9 A;  4ZG9 A;  4LRE A;  5LRM A;  3WAV A;  3A52 A;  3E2D A;  3DPC A;  4ZGA A;  4UPL A;  4MIV A;  3KD8 A;  4FDI A;  1E3C P;  5DLT A;  1KH9 A;  1HJK A;  3WBH A;  4KJD A;  5GOV A;  3WAW A;  4LR8 A;  2W5W A;  4TN0 A;  3CMR A;  2W5R A;  1KH5 A;  4KM4 A;  1ANJ A;  4YR1 A;  1ZED A;  3NKQ A;  3T00 A;  4UPH A;  1O99 A;  1SHQ A;  3WAX A;  2XR9 A;  2GSN A;  3IGZ B;  4UOP A;  4CXS A;  1EW8 A;  1ED8 A;  3MK1 A;  1EI6 A;  5AJ9 A;  3UN3 A;  3NVL A;  1ZEB A;  4LRF A;  4ZG7 A;  2RH6 A;  4N7T A;  1KHJ A;  4LRA A;  1O98 A;  3NKN A;  3UNY A;  1ELX A;  2ZKT A;  5GRR A;  1URB A;  1ZEF A;  3BDF A;  3LXQ A;  3MK2 A;  2X98 A;  5KXA A;  4KJG A;  1HDH A;  1KHL A;  5IJQ A;  4UPI A;  1ALK A;  3DYC A;  3WAY A;  5L0K A;  4NWJ A;  3NKM A;  1N2L A;  4LRB A;  3M8Z A;  4ZG6 A;  5L0B A;  3M7V A;  5LQQ A;  1SHN A;  1AJB A;  1HQA A;  2IUC B;  4QAX A;  1KH7 A;  2GSO A;  3M8Y A;  1ALJ A;  5C66 A;  1ALI A;  2W8D A;  1KHN A;  2G9Y A;  4KAY A;  3T01 A;  1E2S P;  2GSU A;  4LRD A;  1FSU A;  3IDD A;  1P49 A;  1URA A;  1AJA A;  1AUK A;  4UOO A;  1Y7A A;  1ED9 A;  1ALH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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