3KFUE

Crystal structure of the transamidosome
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
468
structure length
468
Chain Sequence
LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase/rna
molecule keywords Non-discriminating and archaeal-type aspartyl-tRNA synthetas
publication title Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 158
structure length 468
sequence length 468
chains with identical sequence H
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2009-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 3kfuE00
1OCHA 4J5PA 3A1IA 2F2AA 5AC3A 1OCKA 2VYAA 4N0IA 4ISTA 1OBLA 1M21A 3H0MA 4N0HA 4GYSA 3QKVA 3K7FA 1O9QA 1M22A 1O9PA 3LJ6A 1MT5A 2DQNA 3A2PA 4CP8A 3A2QA 4DO3A 3OJ8A 3LJ7A 4ISSA 2WJ1A 2GI3A 2DF4A 1O9NA 3K84A 4YJ6A 2G5IA 3PR0A 3K83A 1OBJA 4GYRA 3H0LA 4YJIA 5EWQA 3AL0A 4WJ3A 2DC0A 1OCLA 3A1KA 3H0RA 3QK5A 3KFUE 3PPMA 1OBKA 1OCMA 3IP4A 3QJ9A 3QJ8A 2G5HA 2WAPA 4HBPA 1OBIA 2WJ2A 1O9OA
chains in the Genus database with same CATH superfamily
1OCHA 4J5PA 3A1IA 2F2AA 5AC3A 1OCKA 2VYAA 4N0IA 4ISTA 1OBLA 1M21A 3H0MA 4N0HA 4GYSA 3QKVA 3K7FA 1O9QA 1M22A 1O9PA 3LJ6A 1MT5A 2DQNA 3A2PA 4CP8A 3A2QA 4DO3A 3OJ8A 3LJ7A 4ISSA 2WJ1A 2GI3A 2DF4A 1O9NA 3K84A 4YJ6A 2G5IA 3PR0A 3K83A 1OBJA 4GYRA 3H0LA 4YJIA 5EWQA 3AL0A 4WJ3A 2DC0A 1OCLA 3A1KA 3H0RA 3QK5A 3KFUE 3PPMA 1OBKA 1OCMA 3IP4A 3QJ9A 3QJ8A 2G5HA 2WAPA 4HBPA 1OBIA 2WJ2A 1O9OA
chains in the Genus database with same CATH topology
1OCHA 4J5PA 3A1IA 2F2AA 5AC3A 1OCKA 2VYAA 4N0IA 4ISTA 1OBLA 1M21A 3H0MA 4N0HA 4GYSA 3QKVA 3K7FA 1O9QA 1M22A 1O9PA 3LJ6A 1MT5A 2DQNA 3A2PA 4CP8A 3A2QA 4DO3A 3OJ8A 3LJ7A 4ISSA 2WJ1A 2GI3A 2DF4A 1O9NA 3K84A 4YJ6A 2G5IA 3PR0A 3K83A 1OBJA 4GYRA 3H0LA 4YJIA 5EWQA 3AL0A 4WJ3A 2DC0A 1OCLA 3A1KA 3H0RA 3QK5A 3KFUE 3PPMA 1OBKA 1OCMA 3IP4A 3QJ9A 3QJ8A 2G5HA 2WAPA 4HBPA 1OBIA 2WJ2A 1O9OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCH A;  4J5P A;  3A1I A;  2F2A A;  5AC3 A;  1OCK A;  2VYA A;  4N0I A;  4IST A;  1OBL A;  1M21 A;  3H0M A;  4N0H A;  4GYS A;  3QKV A;  3K7F A;  1O9Q A;  1M22 A;  1O9P A;  3LJ6 A;  1MT5 A;  2DQN A;  3A2P A;  4CP8 A;  3A2Q A;  4DO3 A;  3OJ8 A;  3LJ7 A;  4ISS A;  2WJ1 A;  2GI3 A;  2DF4 A;  1O9N A;  3K84 A;  4YJ6 A;  2G5I A;  3PR0 A;  3K83 A;  1OBJ A;  4GYR A;  3H0L A;  4YJI A;  5EWQ A;  3AL0 A;  4WJ3 A;  2DC0 A;  1OCL A;  3A1K A;  3H0R A;  3QK5 A;  3KFU E;  3PPM A;  1OBK A;  1OCM A;  3IP4 A;  3QJ9 A;  3QJ8 A;  2G5H A;  2WAP A;  4HBP A;  1OBI A;  2WJ2 A;  1O9O A; 
#chains in the Genus database with same CATH topology
 1OCH A;  4J5P A;  3A1I A;  2F2A A;  5AC3 A;  1OCK A;  2VYA A;  4N0I A;  4IST A;  1OBL A;  1M21 A;  3H0M A;  4N0H A;  4GYS A;  3QKV A;  3K7F A;  1O9Q A;  1M22 A;  1O9P A;  3LJ6 A;  1MT5 A;  2DQN A;  3A2P A;  4CP8 A;  3A2Q A;  4DO3 A;  3OJ8 A;  3LJ7 A;  4ISS A;  2WJ1 A;  2GI3 A;  2DF4 A;  1O9N A;  3K84 A;  4YJ6 A;  2G5I A;  3PR0 A;  3K83 A;  1OBJ A;  4GYR A;  3H0L A;  4YJI A;  5EWQ A;  3AL0 A;  4WJ3 A;  2DC0 A;  1OCL A;  3A1K A;  3H0R A;  3QK5 A;  3KFU E;  3PPM A;  1OBK A;  1OCM A;  3IP4 A;  3QJ9 A;  3QJ8 A;  2G5H A;  2WAP A;  4HBP A;  1OBI A;  2WJ2 A;  1O9O A; 
#chains in the Genus database with same CATH homology
 1OCH A;  4J5P A;  3A1I A;  2F2A A;  5AC3 A;  1OCK A;  2VYA A;  4N0I A;  4IST A;  1OBL A;  1M21 A;  3H0M A;  4N0H A;  4GYS A;  3QKV A;  3K7F A;  1O9Q A;  1M22 A;  1O9P A;  3LJ6 A;  1MT5 A;  2DQN A;  3A2P A;  4CP8 A;  3A2Q A;  4DO3 A;  3OJ8 A;  3LJ7 A;  4ISS A;  2WJ1 A;  2GI3 A;  2DF4 A;  1O9N A;  3K84 A;  4YJ6 A;  2G5I A;  3PR0 A;  3K83 A;  1OBJ A;  4GYR A;  3H0L A;  4YJI A;  5EWQ A;  3AL0 A;  4WJ3 A;  2DC0 A;  1OCL A;  3A1K A;  3H0R A;  3QK5 A;  3KFU E;  3PPM A;  1OBK A;  1OCM A;  3IP4 A;  3QJ9 A;  3QJ8 A;  2G5H A;  2WAP A;  4HBP A;  1OBI A;  2WJ2 A;  1O9O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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