3KH2E

Crystal structure of the p1 bacteriophage doc toxin (f68s) in complex with the phd antitoxin (l17m/v39a). northeast structural genomics targets er385-er386
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
72
structure length
72
Chain Sequence
QSINFRTARGNLSEVMNNVEAGEEVEITRRGREPAVIASKATFEAYKKAALDAEFASLFDTLDSTNKELVNR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Death on curing protein
publication title Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems.
pubmed doi rcsb
source organism Bacteriophage p1
total genus 19
structure length 72
sequence length 72
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2009-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3kh2E01
3HRYA 3HS2A 3KH2E 4ZM2A 3K6QA 3CTOA 2A6QA 4ZM0A 3K33B 2ODKA 3G5OA 4ZLXA 3OEIA 3OEIE 3D55A
chains in the Genus database with same CATH superfamily
5C5QC 4L2KC 4L0VC 3KH2E 4HMHC 4L0BC 4L2FC 4UI3C 4HLFC 4L10C 4UI5C 3K33B 2ODKA 4HKNC 5ADSB 3OEIE 3HRYA 4HKIC 5ADRB 4L0IC 4UI6C 5ADQB 3K6QA 3CTOA 4HKKB 4L0TC 4L09C 2A6QA 4L33C 4UI8C 3D55A 5ADTB 4L2GC 4KZQC 2ZIXB 5C5PC 4ZM2A 5C5RC 4L31C 4UVPB 4HLKC 5FPFC 4L34C 4L0SC 4ZM0A 3G5OA 4KZLC 3HS2A 4HL5C 4HLHC 4L32C 4HLGC 4HLMC 4UI7C 3HJ6A 4KZUC 4UI4C 4ZLXA 3OEIA
chains in the Genus database with same CATH topology
3HRYA 3HS2A 3KH2E 4ZM2A 3K6QA 3CTOA 2A6QA 4ZM0A 3K33B 2ODKA 3G5OA 4ZLXA 3OEIA 3OEIE 3D55A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HRY A;  3HS2 A;  3KH2 E;  4ZM2 A;  3K6Q A;  3CTO A;  2A6Q A;  4ZM0 A;  3K33 B;  2ODK A;  3G5O A;  4ZLX A;  3OEI A;  3OEI E;  3D55 A; 
#chains in the Genus database with same CATH topology
 5C5Q C;  4L2K C;  4L0V C;  3KH2 E;  4HMH C;  4L0B C;  4L2F C;  4UI3 C;  4HLF C;  4L10 C;  4UI5 C;  3K33 B;  2ODK A;  4HKN C;  5ADS B;  3OEI E;  3HRY A;  4HKI C;  5ADR B;  4L0I C;  4UI6 C;  5ADQ B;  3K6Q A;  3CTO A;  4HKK B;  4L0T C;  4L09 C;  2A6Q A;  4L33 C;  4UI8 C;  3D55 A;  5ADT B;  4L2G C;  4KZQ C;  2ZIX B;  5C5P C;  4ZM2 A;  5C5R C;  4L31 C;  4UVP B;  4HLK C;  5FPF C;  4L34 C;  4L0S C;  4ZM0 A;  3G5O A;  4KZL C;  3HS2 A;  4HL5 C;  4HLH C;  4L32 C;  4HLG C;  4HLM C;  4UI7 C;  3HJ6 A;  4KZU C;  4UI4 C;  4ZLX A;  3OEI A; 
#chains in the Genus database with same CATH homology
 3HRY A;  3HS2 A;  3KH2 E;  4ZM2 A;  3K6Q A;  3CTO A;  2A6Q A;  4ZM0 A;  3K33 B;  2ODK A;  3G5O A;  4ZLX A;  3OEI A;  3OEI E;  3D55 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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