3KI8A

Crystal structure of hyperthermophilic nitrilase
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
261
structure length
260
Chain Sequence
VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPRGFIGKYRKIHLFYREKFFFEPGDLGFRVFDLGFMKVGVMIFDWFFPESARTLALKGADVIAHPANLVMPYAPRAMPIRALENKVYTVTADRVGEERGLKFIGKSLIASPKAEVLSMASETEEEVGVAEIDLSLVRNKRINDLNDIFKDRREEYYFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Beta ureidopropionase (Beta-alanine synthase)
publication title Crystallographic analysis of a thermoactive nitrilase.
pubmed doi rcsb
source organism Pyrococcus abyssi
total genus 88
structure length 260
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.5.5.1: Nitrilase.
pdb deposition date 2009-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 3ki8A00
4GYLA 4GYNA 1FO6A 4CYFA 2GGKA 2GGLA 5KHAA 3SZGA 5H8KA 3HKXA 4CYYA 2UXYA 1UF8A 3KI8A 4IZUA 3SYTA 1UF7A 2E2LA 2W1VA 4IZVA 4KZFA 1ERZA 3SEQA 3IW3A 3P8KA 5H8LA 2DYVA 3KLCA 1F89A 1UF5A 4LF0A 3SEZA 3N05A 4HGDA 4IZSA 4IZWA 3IVZA 3WUYA 5JQNA 1J31A 3SDBA 2VHHA 2VHIA 4HG3A 1UF4A 4CYGA 4IZTA 4F4HA 1EMSA 5H8JA 2E11A 4HG5A 2E2KA 2DYUA 2PLQA 3ILVA 4H5UA 3DLAA 5H8IA
chains in the Genus database with same CATH superfamily
4GYLA 4GYNA 1FO6A 4CYFA 2GGKA 2GGLA 5KHAA 3SZGA 5H8KA 3HKXA 4CYYA 2UXYA 1UF8A 3KI8A 4IZUA 3SYTA 1UF7A 2E2LA 2W1VA 4IZVA 4KZFA 1ERZA 3SEQA 3IW3A 3P8KA 5H8LA 2DYVA 3KLCA 1F89A 1UF5A 4LF0A 3SEZA 3N05A 4HGDA 4IZSA 4IZWA 3IVZA 3WUYA 5JQNA 1J31A 3SDBA 2VHHA 2VHIA 4HG3A 1UF4A 4CYGA 4IZTA 4F4HA 1EMSA 5H8JA 2E11A 4HG5A 2E2KA 2DYUA 2PLQA 3ILVA 4H5UA 3DLAA 5H8IA
chains in the Genus database with same CATH topology
4GYLA 4GYNA 1FO6A 4CYFA 2GGKA 2GGLA 5KHAA 3SZGA 5H8KA 3HKXA 4CYYA 2UXYA 1UF8A 3KI8A 4IZUA 3SYTA 1UF7A 2E2LA 2W1VA 4IZVA 4KZFA 1ERZA 3SEQA 3IW3A 3P8KA 5H8LA 2DYVA 3KLCA 1F89A 1UF5A 4LF0A 3SEZA 3N05A 4HGDA 4IZSA 4IZWA 3IVZA 3WUYA 5JQNA 1J31A 3SDBA 2VHHA 2VHIA 4HG3A 1UF4A 4CYGA 4IZTA 4F4HA 1EMSA 5H8JA 2E11A 4HG5A 2E2KA 2DYUA 2PLQA 3ILVA 4H5UA 3DLAA 5H8IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GYL A;  4GYN A;  1FO6 A;  4CYF A;  2GGK A;  2GGL A;  5KHA A;  3SZG A;  5H8K A;  3HKX A;  4CYY A;  2UXY A;  1UF8 A;  3KI8 A;  4IZU A;  3SYT A;  1UF7 A;  2E2L A;  2W1V A;  4IZV A;  4KZF A;  1ERZ A;  3SEQ A;  3IW3 A;  3P8K A;  5H8L A;  2DYV A;  3KLC A;  1F89 A;  1UF5 A;  4LF0 A;  3SEZ A;  3N05 A;  4HGD A;  4IZS A;  4IZW A;  3IVZ A;  3WUY A;  5JQN A;  1J31 A;  3SDB A;  2VHH A;  2VHI A;  4HG3 A;  1UF4 A;  4CYG A;  4IZT A;  4F4H A;  1EMS A;  5H8J A;  2E11 A;  4HG5 A;  2E2K A;  2DYU A;  2PLQ A;  3ILV A;  4H5U A;  3DLA A;  5H8I A; 
#chains in the Genus database with same CATH topology
 4GYL A;  4GYN A;  1FO6 A;  4CYF A;  2GGK A;  2GGL A;  5KHA A;  3SZG A;  5H8K A;  3HKX A;  4CYY A;  2UXY A;  1UF8 A;  3KI8 A;  4IZU A;  3SYT A;  1UF7 A;  2E2L A;  2W1V A;  4IZV A;  4KZF A;  1ERZ A;  3SEQ A;  3IW3 A;  3P8K A;  5H8L A;  2DYV A;  3KLC A;  1F89 A;  1UF5 A;  4LF0 A;  3SEZ A;  3N05 A;  4HGD A;  4IZS A;  4IZW A;  3IVZ A;  3WUY A;  5JQN A;  1J31 A;  3SDB A;  2VHH A;  2VHI A;  4HG3 A;  1UF4 A;  4CYG A;  4IZT A;  4F4H A;  1EMS A;  5H8J A;  2E11 A;  4HG5 A;  2E2K A;  2DYU A;  2PLQ A;  3ILV A;  4H5U A;  3DLA A;  5H8I A; 
#chains in the Genus database with same CATH homology
 4GYL A;  4GYN A;  1FO6 A;  4CYF A;  2GGK A;  2GGL A;  5KHA A;  3SZG A;  5H8K A;  3HKX A;  4CYY A;  2UXY A;  1UF8 A;  3KI8 A;  4IZU A;  3SYT A;  1UF7 A;  2E2L A;  2W1V A;  4IZV A;  4KZF A;  1ERZ A;  3SEQ A;  3IW3 A;  3P8K A;  5H8L A;  2DYV A;  3KLC A;  1F89 A;  1UF5 A;  4LF0 A;  3SEZ A;  3N05 A;  4HGD A;  4IZS A;  4IZW A;  3IVZ A;  3WUY A;  5JQN A;  1J31 A;  3SDB A;  2VHH A;  2VHI A;  4HG3 A;  1UF4 A;  4CYG A;  4IZT A;  4F4H A;  1EMS A;  5H8J A;  2E11 A;  4HG5 A;  2E2K A;  2DYU A;  2PLQ A;  3ILV A;  4H5U A;  3DLA A;  5H8I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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