3KMTA

Crystal structure of vset/sah/h3 ternary complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
119
structure length
119
Chain Sequence
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords A612L protein
publication title Dimerization of a viral SET protein endows its function.
pubmed doi rcsb
total genus 27
structure length 119
sequence length 119
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3kmtA01
2O8JA 5KJLA 3RIBA 1H3IA 5EG2A 4BUPA 4YPUA 5LSXA 4QEOA 2RFIA 4FMUA 3M53A 3DALA 4I51A 3FPDA 2R3AA 3KMAA 5HI7A 4J7IA 5LSZA 5JJ0A 1MVXA 3IHXA 3M57A 4WUYA 2W5ZA 3S7FA 3QWPA 3CBPA 3OOIA 4AU7A 1PEGA 5TH7A 4J7FA 5KJNA 1O9SA 4MI0A 4J83A 3F9ZA 5KJMA 1N6CA 2BQZA 3M59A 5T5GA 4MI5A 3M56A 3TG4A 3EP0A 1MT6A 3S7JA 3K5KA 3HNAA 4YNPA 5JINA 5EX0A 5CCLA 4LDGA 3S7DA 4RZ0A 4IJ8A 5TEGA 3MO2A 4JLGA 3SW9A 3MO0A 4YPEA 4NVQA 2W5YA 4NJ5A 3M55A 3CBOA 2G46A 2JV0A 3RQ4A 3MO5A 5F59A 5CPRB 5EX3A 5F6KC 3VV0A 3M5AA 3RAYA 5ARFA 4H12A 4YPAA 1N6AA 3F9YA 4C1QA 1XQHA 5ARGA 1MVHA 1ML9A 3F9XA 2F69A 3KMTA 3QWWA 5T0KA 5AYFA 5HQ8A 4E47A 1N3JA 3RU0A 3TG5A 4O30A 4JDSA 3PDNA 3OPEA 3CBMA 4YNDA 3N71A 3S8PA 5CCMA 1MUFA 5F5EA 3RJWA 4J8OA 3VUZA 3OXLA 3BO5A 5KJKA 3SWCA 3OS5A 4O6FA 5F6LA 5T0MA 3S7BA 3F9WA 2QPWA 2IGQA 5JIYA 3QWVA 5JHNA 3DB5A 3KMJA 4Z4PA 1ZKKA 4YNMA 4QEPA 5TTFA 3M54A 3OXGA 3OXFA 3MEKA 3M58A 4IJDA 4QENA
chains in the Genus database with same CATH superfamily
2O8JA 5KJLA 3RIBA 1H3IA 5EG2A 4BUPA 4YPUA 5LSXA 4QEOA 2RFIA 4FMUA 3M53A 3DALA 4I51A 3FPDA 2R3AA 3KMAA 5HI7A 4J7IA 5LSZA 5JJ0A 1MVXA 3IHXA 3M57A 4WUYA 2W5ZA 3S7FA 3QWPA 3CBPA 3OOIA 4AU7A 1PEGA 5TH7A 4J7FA 5KJNA 1O9SA 4MI0A 4J83A 3F9ZA 5KJMA 1N6CA 2BQZA 3M59A 5T5GA 4MI5A 3M56A 3TG4A 3EP0A 1MT6A 3S7JA 3K5KA 3HNAA 4YNPA 5JINA 5EX0A 5CCLA 4LDGA 3S7DA 4RZ0A 4IJ8A 5TEGA 3MO2A 4JLGA 3SW9A 3MO0A 4YPEA 4NVQA 2W5YA 4NJ5A 3M55A 3CBOA 2G46A 2JV0A 3RQ4A 3MO5A 5F59A 5CPRB 5EX3A 5F6KC 3VV0A 3M5AA 3RAYA 5ARFA 4H12A 4YPAA 1N6AA 3F9YA 4C1QA 1XQHA 5ARGA 1MVHA 1ML9A 3F9XA 2F69A 3KMTA 3QWWA 5T0KA 5AYFA 5HQ8A 4E47A 1N3JA 3RU0A 3TG5A 4O30A 4JDSA 3PDNA 3OPEA 3CBMA 4YNDA 3N71A 3S8PA 5CCMA 1MUFA 5F5EA 3RJWA 4J8OA 3VUZA 3OXLA 3BO5A 5KJKA 3SWCA 3OS5A 4O6FA 5F6LA 5T0MA 3S7BA 3F9WA 2QPWA 2IGQA 5JIYA 3QWVA 5JHNA 3DB5A 3KMJA 4Z4PA 1ZKKA 4YNMA 4QEPA 5TTFA 3M54A 3OXGA 3OXFA 3MEKA 3M58A 4IJDA 4QENA
chains in the Genus database with same CATH topology
2O8JA 5KJLA 3RIBA 1H3IA 5EG2A 4BUPA 4YPUA 5LSXA 4QEOA 2RFIA 4FMUA 3M53A 3DALA 4I51A 3FPDA 2R3AA 3KMAA 5HI7A 4J7IA 5LSZA 5JJ0A 1MVXA 3IHXA 3M57A 4WUYA 2W5ZA 3S7FA 3QWPA 3CBPA 3OOIA 4AU7A 1PEGA 5TH7A 4J7FA 5KJNA 1O9SA 4MI0A 4J83A 3F9ZA 5KJMA 1N6CA 2BQZA 3M59A 5T5GA 4MI5A 3M56A 3TG4A 3EP0A 1MT6A 3S7JA 3K5KA 3HNAA 4YNPA 5JINA 5EX0A 5CCLA 4LDGA 3S7DA 4RZ0A 4IJ8A 5TEGA 3MO2A 4JLGA 3SW9A 3MO0A 4YPEA 4NVQA 2W5YA 4NJ5A 3M55A 3CBOA 2G46A 2JV0A 3RQ4A 3MO5A 5F59A 5CPRB 5EX3A 5F6KC 3VV0A 3M5AA 3RAYA 5ARFA 4H12A 4YPAA 1N6AA 3F9YA 4C1QA 1XQHA 5ARGA 1MVHA 1ML9A 3F9XA 2F69A 3KMTA 3QWWA 5T0KA 5AYFA 5HQ8A 4E47A 1N3JA 3RU0A 3TG5A 4O30A 4JDSA 3PDNA 3OPEA 3CBMA 4YNDA 3N71A 3S8PA 5CCMA 1MUFA 5F5EA 3RJWA 4J8OA 3VUZA 3OXLA 3BO5A 5KJKA 3SWCA 3OS5A 4O6FA 5F6LA 5T0MA 3S7BA 3F9WA 2QPWA 2IGQA 5JIYA 3QWVA 5JHNA 3DB5A 3KMJA 4Z4PA 1ZKKA 4YNMA 4QEPA 5TTFA 3M54A 3OXGA 3OXFA 3MEKA 3M58A 4IJDA 4QENA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O8J A;  5KJL A;  3RIB A;  1H3I A;  5EG2 A;  4BUP A;  4YPU A;  5LSX A;  4QEO A;  2RFI A;  4FMU A;  3M53 A;  3DAL A;  4I51 A;  3FPD A;  2R3A A;  3KMA A;  5HI7 A;  4J7I A;  5LSZ A;  5JJ0 A;  1MVX A;  3IHX A;  3M57 A;  4WUY A;  2W5Z A;  3S7F A;  3QWP A;  3CBP A;  3OOI A;  4AU7 A;  1PEG A;  5TH7 A;  4J7F A;  5KJN A;  1O9S A;  4MI0 A;  4J83 A;  3F9Z A;  5KJM A;  1N6C A;  2BQZ A;  3M59 A;  5T5G A;  4MI5 A;  3M56 A;  3TG4 A;  3EP0 A;  1MT6 A;  3S7J A;  3K5K A;  3HNA A;  4YNP A;  5JIN A;  5EX0 A;  5CCL A;  4LDG A;  3S7D A;  4RZ0 A;  4IJ8 A;  5TEG A;  3MO2 A;  4JLG A;  3SW9 A;  3MO0 A;  4YPE A;  4NVQ A;  2W5Y A;  4NJ5 A;  3M55 A;  3CBO A;  2G46 A;  2JV0 A;  3RQ4 A;  3MO5 A;  5F59 A;  5CPR B;  5EX3 A;  5F6K C;  3VV0 A;  3M5A A;  3RAY A;  5ARF A;  4H12 A;  4YPA A;  1N6A A;  3F9Y A;  4C1Q A;  1XQH A;  5ARG A;  1MVH A;  1ML9 A;  3F9X A;  2F69 A;  3KMT A;  3QWW A;  5T0K A;  5AYF A;  5HQ8 A;  4E47 A;  1N3J A;  3RU0 A;  3TG5 A;  4O30 A;  4JDS A;  3PDN A;  3OPE A;  3CBM A;  4YND A;  3N71 A;  3S8P A;  5CCM A;  1MUF A;  5F5E A;  3RJW A;  4J8O A;  3VUZ A;  3OXL A;  3BO5 A;  5KJK A;  3SWC A;  3OS5 A;  4O6F A;  5F6L A;  5T0M A;  3S7B A;  3F9W A;  2QPW A;  2IGQ A;  5JIY A;  3QWV A;  5JHN A;  3DB5 A;  3KMJ A;  4Z4P A;  1ZKK A;  4YNM A;  4QEP A;  5TTF A;  3M54 A;  3OXG A;  3OXF A;  3MEK A;  3M58 A;  4IJD A;  4QEN A; 
#chains in the Genus database with same CATH topology
 2O8J A;  5KJL A;  3RIB A;  1H3I A;  5EG2 A;  4BUP A;  4YPU A;  5LSX A;  4QEO A;  2RFI A;  4FMU A;  3M53 A;  3DAL A;  4I51 A;  3FPD A;  2R3A A;  3KMA A;  5HI7 A;  4J7I A;  5LSZ A;  5JJ0 A;  1MVX A;  3IHX A;  3M57 A;  4WUY A;  2W5Z A;  3S7F A;  3QWP A;  3CBP A;  3OOI A;  4AU7 A;  1PEG A;  5TH7 A;  4J7F A;  5KJN A;  1O9S A;  4MI0 A;  4J83 A;  3F9Z A;  5KJM A;  1N6C A;  2BQZ A;  3M59 A;  5T5G A;  4MI5 A;  3M56 A;  3TG4 A;  3EP0 A;  1MT6 A;  3S7J A;  3K5K A;  3HNA A;  4YNP A;  5JIN A;  5EX0 A;  5CCL A;  4LDG A;  3S7D A;  4RZ0 A;  4IJ8 A;  5TEG A;  3MO2 A;  4JLG A;  3SW9 A;  3MO0 A;  4YPE A;  4NVQ A;  2W5Y A;  4NJ5 A;  3M55 A;  3CBO A;  2G46 A;  2JV0 A;  3RQ4 A;  3MO5 A;  5F59 A;  5CPR B;  5EX3 A;  5F6K C;  3VV0 A;  3M5A A;  3RAY A;  5ARF A;  4H12 A;  4YPA A;  1N6A A;  3F9Y A;  4C1Q A;  1XQH A;  5ARG A;  1MVH A;  1ML9 A;  3F9X A;  2F69 A;  3KMT A;  3QWW A;  5T0K A;  5AYF A;  5HQ8 A;  4E47 A;  1N3J A;  3RU0 A;  3TG5 A;  4O30 A;  4JDS A;  3PDN A;  3OPE A;  3CBM A;  4YND A;  3N71 A;  3S8P A;  5CCM A;  1MUF A;  5F5E A;  3RJW A;  4J8O A;  3VUZ A;  3OXL A;  3BO5 A;  5KJK A;  3SWC A;  3OS5 A;  4O6F A;  5F6L A;  5T0M A;  3S7B A;  3F9W A;  2QPW A;  2IGQ A;  5JIY A;  3QWV A;  5JHN A;  3DB5 A;  3KMJ A;  4Z4P A;  1ZKK A;  4YNM A;  4QEP A;  5TTF A;  3M54 A;  3OXG A;  3OXF A;  3MEK A;  3M58 A;  4IJD A;  4QEN A; 
#chains in the Genus database with same CATH homology
 2O8J A;  5KJL A;  3RIB A;  1H3I A;  5EG2 A;  4BUP A;  4YPU A;  5LSX A;  4QEO A;  2RFI A;  4FMU A;  3M53 A;  3DAL A;  4I51 A;  3FPD A;  2R3A A;  3KMA A;  5HI7 A;  4J7I A;  5LSZ A;  5JJ0 A;  1MVX A;  3IHX A;  3M57 A;  4WUY A;  2W5Z A;  3S7F A;  3QWP A;  3CBP A;  3OOI A;  4AU7 A;  1PEG A;  5TH7 A;  4J7F A;  5KJN A;  1O9S A;  4MI0 A;  4J83 A;  3F9Z A;  5KJM A;  1N6C A;  2BQZ A;  3M59 A;  5T5G A;  4MI5 A;  3M56 A;  3TG4 A;  3EP0 A;  1MT6 A;  3S7J A;  3K5K A;  3HNA A;  4YNP A;  5JIN A;  5EX0 A;  5CCL A;  4LDG A;  3S7D A;  4RZ0 A;  4IJ8 A;  5TEG A;  3MO2 A;  4JLG A;  3SW9 A;  3MO0 A;  4YPE A;  4NVQ A;  2W5Y A;  4NJ5 A;  3M55 A;  3CBO A;  2G46 A;  2JV0 A;  3RQ4 A;  3MO5 A;  5F59 A;  5CPR B;  5EX3 A;  5F6K C;  3VV0 A;  3M5A A;  3RAY A;  5ARF A;  4H12 A;  4YPA A;  1N6A A;  3F9Y A;  4C1Q A;  1XQH A;  5ARG A;  1MVH A;  1ML9 A;  3F9X A;  2F69 A;  3KMT A;  3QWW A;  5T0K A;  5AYF A;  5HQ8 A;  4E47 A;  1N3J A;  3RU0 A;  3TG5 A;  4O30 A;  4JDS A;  3PDN A;  3OPE A;  3CBM A;  4YND A;  3N71 A;  3S8P A;  5CCM A;  1MUF A;  5F5E A;  3RJW A;  4J8O A;  3VUZ A;  3OXL A;  3BO5 A;  5KJK A;  3SWC A;  3OS5 A;  4O6F A;  5F6L A;  5T0M A;  3S7B A;  3F9W A;  2QPW A;  2IGQ A;  5JIY A;  3QWV A;  5JHN A;  3DB5 A;  3KMJ A;  4Z4P A;  1ZKK A;  4YNM A;  4QEP A;  5TTF A;  3M54 A;  3OXG A;  3OXF A;  3MEK A;  3M58 A;  4IJD A;  4QEN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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