3KMTA

Crystal structure of vset/sah/h3 ternary complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
119
structure length
119
Chain Sequence
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
publication title Dimerization of a viral SET protein endows its function.
pubmed doi rcsb
molecule keywords A612L protein
total genus 27
structure length 119
sequence length 119
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3kmtA01
2W5ZA 4WUYA 3M55A 3RIBA 3BO5A 4NJ5A 3MO0A 3OXGA 1N3JA 2RFIA 3F9WA 5TEGA 4J7FA 4RZ0A 4LDGA 5LSZA 3QWPA 5F59A 5AYFA 3F9YA 4QENA 1MUFA 3S8PA 3SW9A 5ARGA 3M54A 3S7JA 4H12A 5EG2A 5CCLA 5HI7A 5LSXA 4J7IA 5KJLA 5F6LA 3KMAA 1ML9A 1H3IA 3FPDA 4QEOA 3QWWA 3M57A 4E47A 2BQZA 3VUZA 1N6AA 3S7DA 3CBPA 3DALA 3M53A 3N71A 3QWVA 3OOIA 3OPEA 2W5YA 3DB5A 3M5AA 3MO5A 5F5EA 2F69A 3F9ZA 4O6FA 2O8JA 4YPUA 1O9SA 5KJKA 4O30A 3EP0A 4YNPA 3OXLA 3OXFA 4C1QA 3OS5A 1MT6A 3CBOA 4J8OA 3SWCA 3TG4A 3S7BA 3CBMA 1MVXA 5F6KC 2G46A 3RAYA 1N6CA 5JINA 4JLGA 3RU0A 2IGQA 3RQ4A 3KMJA 5JIYA 3IHXA 3TG5A 4JDSA 4YNMA 4YPAA 5T0KA 5ARFA 3M58A 3KMTA 4AU7A 5JHNA 5CPRB 4MI0A 3M59A 4QEPA 2JV0A 5T5GA 2QPWA 4YPEA 5EX3A 3MO2A 4FMUA 5JJ0A 1XQHA 2R3AA 3VV0A 3HNAA 4IJ8A 1PEGA 4MI5A 3M56A 3RJWA 1ZKKA 4J83A 3MEKA 5KJNA 4IJDA 5EX0A 5T0MA 5CCMA 4BUPA 3F9XA 3PDNA 5TTFA 4Z4PA 1MVHA 5HQ8A 5KJMA 4NVQA 5TH7A 3K5KA 4YNDA 3S7FA 4I51A
chains in the Genus database with same CATH superfamily
2W5ZA 4WUYA 3M55A 3RIBA 3BO5A 4NJ5A 3MO0A 3OXGA 1N3JA 2RFIA 3F9WA 5TEGA 4J7FA 4RZ0A 4LDGA 5LSZA 3QWPA 5F59A 5AYFA 3F9YA 4QENA 1MUFA 3S8PA 3SW9A 5ARGA 3M54A 3S7JA 4H12A 5EG2A 5CCLA 5HI7A 5LSXA 4J7IA 5KJLA 5F6LA 3KMAA 1ML9A 1H3IA 3FPDA 4QEOA 3QWWA 3M57A 4E47A 2BQZA 3VUZA 1N6AA 3S7DA 3CBPA 3DALA 3M53A 3N71A 3QWVA 3OOIA 3OPEA 2W5YA 3DB5A 3M5AA 3MO5A 5F5EA 2F69A 3F9ZA 4O6FA 2O8JA 4YPUA 1O9SA 5KJKA 4O30A 3EP0A 4YNPA 3OXLA 3OXFA 4C1QA 3OS5A 1MT6A 3CBOA 4J8OA 3SWCA 3TG4A 3S7BA 3CBMA 1MVXA 5F6KC 2G46A 3RAYA 1N6CA 5JINA 4JLGA 3RU0A 2IGQA 3RQ4A 3KMJA 5JIYA 3IHXA 3TG5A 4JDSA 4YNMA 4YPAA 5T0KA 5ARFA 3M58A 3KMTA 4AU7A 5JHNA 5CPRB 4MI0A 3M59A 4QEPA 2JV0A 5T5GA 2QPWA 4YPEA 5EX3A 3MO2A 4FMUA 5JJ0A 1XQHA 2R3AA 3VV0A 3HNAA 4IJ8A 1PEGA 4MI5A 3M56A 3RJWA 1ZKKA 4J83A 3MEKA 5KJNA 4IJDA 5EX0A 5T0MA 5CCMA 4BUPA 3F9XA 3PDNA 5TTFA 4Z4PA 1MVHA 5HQ8A 5KJMA 4NVQA 5TH7A 3K5KA 4YNDA 3S7FA 4I51A
chains in the Genus database with same CATH topology
2W5ZA 4WUYA 3M55A 3RIBA 3BO5A 4NJ5A 3MO0A 3OXGA 1N3JA 2RFIA 3F9WA 5TEGA 4J7FA 4RZ0A 4LDGA 5LSZA 3QWPA 5F59A 5AYFA 3F9YA 4QENA 1MUFA 3S8PA 3SW9A 5ARGA 3M54A 3S7JA 4H12A 5EG2A 5CCLA 5HI7A 5LSXA 4J7IA 5KJLA 5F6LA 3KMAA 1ML9A 1H3IA 3FPDA 4QEOA 3QWWA 3M57A 4E47A 2BQZA 3VUZA 1N6AA 3S7DA 3CBPA 3DALA 3M53A 3N71A 3QWVA 3OOIA 3OPEA 2W5YA 3DB5A 3M5AA 3MO5A 5F5EA 2F69A 3F9ZA 4O6FA 2O8JA 4YPUA 1O9SA 5KJKA 4O30A 3EP0A 4YNPA 3OXLA 3OXFA 4C1QA 3OS5A 1MT6A 3CBOA 4J8OA 3SWCA 3TG4A 3S7BA 3CBMA 1MVXA 5F6KC 2G46A 3RAYA 1N6CA 5JINA 4JLGA 3RU0A 2IGQA 3RQ4A 3KMJA 5JIYA 3IHXA 3TG5A 4JDSA 4YNMA 4YPAA 5T0KA 5ARFA 3M58A 3KMTA 4AU7A 5JHNA 5CPRB 4MI0A 3M59A 4QEPA 2JV0A 5T5GA 2QPWA 4YPEA 5EX3A 3MO2A 4FMUA 5JJ0A 1XQHA 2R3AA 3VV0A 3HNAA 4IJ8A 1PEGA 4MI5A 3M56A 3RJWA 1ZKKA 4J83A 3MEKA 5KJNA 4IJDA 5EX0A 5T0MA 5CCMA 4BUPA 3F9XA 3PDNA 5TTFA 4Z4PA 1MVHA 5HQ8A 5KJMA 4NVQA 5TH7A 3K5KA 4YNDA 3S7FA 4I51A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5Z A;  4WUY A;  3M55 A;  3RIB A;  3BO5 A;  4NJ5 A;  3MO0 A;  3OXG A;  1N3J A;  2RFI A;  3F9W A;  5TEG A;  4J7F A;  4RZ0 A;  4LDG A;  5LSZ A;  3QWP A;  5F59 A;  5AYF A;  3F9Y A;  4QEN A;  1MUF A;  3S8P A;  3SW9 A;  5ARG A;  3M54 A;  3S7J A;  4H12 A;  5EG2 A;  5CCL A;  5HI7 A;  5LSX A;  4J7I A;  5KJL A;  5F6L A;  3KMA A;  1ML9 A;  1H3I A;  3FPD A;  4QEO A;  3QWW A;  3M57 A;  4E47 A;  2BQZ A;  3VUZ A;  1N6A A;  3S7D A;  3CBP A;  3DAL A;  3M53 A;  3N71 A;  3QWV A;  3OOI A;  3OPE A;  2W5Y A;  3DB5 A;  3M5A A;  3MO5 A;  5F5E A;  2F69 A;  3F9Z A;  4O6F A;  2O8J A;  4YPU A;  1O9S A;  5KJK A;  4O30 A;  3EP0 A;  4YNP A;  3OXL A;  3OXF A;  4C1Q A;  3OS5 A;  1MT6 A;  3CBO A;  4J8O A;  3SWC A;  3TG4 A;  3S7B A;  3CBM A;  1MVX A;  5F6K C;  2G46 A;  3RAY A;  1N6C A;  5JIN A;  4JLG A;  3RU0 A;  2IGQ A;  3RQ4 A;  3KMJ A;  5JIY A;  3IHX A;  3TG5 A;  4JDS A;  4YNM A;  4YPA A;  5T0K A;  5ARF A;  3M58 A;  3KMT A;  4AU7 A;  5JHN A;  5CPR B;  4MI0 A;  3M59 A;  4QEP A;  2JV0 A;  5T5G A;  2QPW A;  4YPE A;  5EX3 A;  3MO2 A;  4FMU A;  5JJ0 A;  1XQH A;  2R3A A;  3VV0 A;  3HNA A;  4IJ8 A;  1PEG A;  4MI5 A;  3M56 A;  3RJW A;  1ZKK A;  4J83 A;  3MEK A;  5KJN A;  4IJD A;  5EX0 A;  5T0M A;  5CCM A;  4BUP A;  3F9X A;  3PDN A;  5TTF A;  4Z4P A;  1MVH A;  5HQ8 A;  5KJM A;  4NVQ A;  5TH7 A;  3K5K A;  4YND A;  3S7F A;  4I51 A; 
#chains in the Genus database with same CATH topology
 2W5Z A;  4WUY A;  3M55 A;  3RIB A;  3BO5 A;  4NJ5 A;  3MO0 A;  3OXG A;  1N3J A;  2RFI A;  3F9W A;  5TEG A;  4J7F A;  4RZ0 A;  4LDG A;  5LSZ A;  3QWP A;  5F59 A;  5AYF A;  3F9Y A;  4QEN A;  1MUF A;  3S8P A;  3SW9 A;  5ARG A;  3M54 A;  3S7J A;  4H12 A;  5EG2 A;  5CCL A;  5HI7 A;  5LSX A;  4J7I A;  5KJL A;  5F6L A;  3KMA A;  1ML9 A;  1H3I A;  3FPD A;  4QEO A;  3QWW A;  3M57 A;  4E47 A;  2BQZ A;  3VUZ A;  1N6A A;  3S7D A;  3CBP A;  3DAL A;  3M53 A;  3N71 A;  3QWV A;  3OOI A;  3OPE A;  2W5Y A;  3DB5 A;  3M5A A;  3MO5 A;  5F5E A;  2F69 A;  3F9Z A;  4O6F A;  2O8J A;  4YPU A;  1O9S A;  5KJK A;  4O30 A;  3EP0 A;  4YNP A;  3OXL A;  3OXF A;  4C1Q A;  3OS5 A;  1MT6 A;  3CBO A;  4J8O A;  3SWC A;  3TG4 A;  3S7B A;  3CBM A;  1MVX A;  5F6K C;  2G46 A;  3RAY A;  1N6C A;  5JIN A;  4JLG A;  3RU0 A;  2IGQ A;  3RQ4 A;  3KMJ A;  5JIY A;  3IHX A;  3TG5 A;  4JDS A;  4YNM A;  4YPA A;  5T0K A;  5ARF A;  3M58 A;  3KMT A;  4AU7 A;  5JHN A;  5CPR B;  4MI0 A;  3M59 A;  4QEP A;  2JV0 A;  5T5G A;  2QPW A;  4YPE A;  5EX3 A;  3MO2 A;  4FMU A;  5JJ0 A;  1XQH A;  2R3A A;  3VV0 A;  3HNA A;  4IJ8 A;  1PEG A;  4MI5 A;  3M56 A;  3RJW A;  1ZKK A;  4J83 A;  3MEK A;  5KJN A;  4IJD A;  5EX0 A;  5T0M A;  5CCM A;  4BUP A;  3F9X A;  3PDN A;  5TTF A;  4Z4P A;  1MVH A;  5HQ8 A;  5KJM A;  4NVQ A;  5TH7 A;  3K5K A;  4YND A;  3S7F A;  4I51 A; 
#chains in the Genus database with same CATH homology
 2W5Z A;  4WUY A;  3M55 A;  3RIB A;  3BO5 A;  4NJ5 A;  3MO0 A;  3OXG A;  1N3J A;  2RFI A;  3F9W A;  5TEG A;  4J7F A;  4RZ0 A;  4LDG A;  5LSZ A;  3QWP A;  5F59 A;  5AYF A;  3F9Y A;  4QEN A;  1MUF A;  3S8P A;  3SW9 A;  5ARG A;  3M54 A;  3S7J A;  4H12 A;  5EG2 A;  5CCL A;  5HI7 A;  5LSX A;  4J7I A;  5KJL A;  5F6L A;  3KMA A;  1ML9 A;  1H3I A;  3FPD A;  4QEO A;  3QWW A;  3M57 A;  4E47 A;  2BQZ A;  3VUZ A;  1N6A A;  3S7D A;  3CBP A;  3DAL A;  3M53 A;  3N71 A;  3QWV A;  3OOI A;  3OPE A;  2W5Y A;  3DB5 A;  3M5A A;  3MO5 A;  5F5E A;  2F69 A;  3F9Z A;  4O6F A;  2O8J A;  4YPU A;  1O9S A;  5KJK A;  4O30 A;  3EP0 A;  4YNP A;  3OXL A;  3OXF A;  4C1Q A;  3OS5 A;  1MT6 A;  3CBO A;  4J8O A;  3SWC A;  3TG4 A;  3S7B A;  3CBM A;  1MVX A;  5F6K C;  2G46 A;  3RAY A;  1N6C A;  5JIN A;  4JLG A;  3RU0 A;  2IGQ A;  3RQ4 A;  3KMJ A;  5JIY A;  3IHX A;  3TG5 A;  4JDS A;  4YNM A;  4YPA A;  5T0K A;  5ARF A;  3M58 A;  3KMT A;  4AU7 A;  5JHN A;  5CPR B;  4MI0 A;  3M59 A;  4QEP A;  2JV0 A;  5T5G A;  2QPW A;  4YPE A;  5EX3 A;  3MO2 A;  4FMU A;  5JJ0 A;  1XQH A;  2R3A A;  3VV0 A;  3HNA A;  4IJ8 A;  1PEG A;  4MI5 A;  3M56 A;  3RJW A;  1ZKK A;  4J83 A;  3MEK A;  5KJN A;  4IJD A;  5EX0 A;  5T0M A;  5CCM A;  4BUP A;  3F9X A;  3PDN A;  5TTF A;  4Z4P A;  1MVH A;  5HQ8 A;  5KJM A;  4NVQ A;  5TH7 A;  3K5K A;  4YND A;  3S7F A;  4I51 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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