3KNTA

Crystal structure of methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
Total Genus 76
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
207
structure length
207
Chain Sequence
MMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYQEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords N-glycosylase/DNA lyase
publication title The C-terminal Lysine of Ogg2 DNA Glycosylases is a Major Molecular Determinant for Guanine/8-Oxoguanine Distinction.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Hydrolase, lyase/dna
total genus 76
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2009-11-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3kntA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3kntA01
3I0WA 4E9GA 4EW4A 1WEGA 4EA4A 3IHOA 1N3AA 4OFAA 3FHFA 4EJYA 1YQKA 2NOHA 1P59A 2NOFA 2JG6A 4PIIA 4AIAA 4EW0A 2XHIA 1KG3A 3CVTA 1XQOA 4UOBA 3OH9A 1HU0A 1WEFA 1LWWA 1LWYA 5AN4A 4E9HA 1MUDA 1N3CA 1KG2A 1PU8A 1DIZA 4OFEA 1M3QA 1RRSA 1MPGA 1RRQA 1KG5A 1KQJA 3OGDA 4OFHA 4AI4A 1KEAA 3KNTA 1WEIA 4YPRA 3FSPA 2NOBA 3F0ZA 4HSBA 4B22A 1PU7A 4UNFA 1KG7A 5KN8A 4AI5A 2YG8A 2NOZA 3D4VA 4B21A 2JHNA 1PVSA 1KG4A 3N0UA 3S6IA 3F10A 1P7MA 1MUNA 1KO9A 3N5NX 4B24A 4EJZA 4EVVA 1LMZA 1XG7A 2OFKA 4B23A 4YPHA 1XQPA 1FN7A 4E9EA 3CWAA 3KTUA 1YQMA 3CW7A 4DK9A 1N39A 1KG6A 3CWSA 1NGNA 2ABKA 4YOQA 5DPKA 2OFIA 3I0XA 5CHZA 1YQRA 4E9FA 1LWVA 2I5WA 2JHJA 2NOEA 1ORPA 4EA5A 3OH6A 2YG9A 3CVSA 1YQLA 1MUYA 1PU6A 5KN9A 2NOLA 1ORNA 3G0QA 1NKUA 3IH7A 3CWTA 3FHGA 1M3HA 2H56A 1VRLA 2NOIA 3CWUA 1EBMA
chains in the Genus database with same CATH superfamily
3I0WA 4E9GA 4EW4A 1WEGA 4EA4A 3IHOA 1N3AA 4BE2A 4E7LA 1U84A 4OFAA 3FHFA 4EJYA 1YQKA 2NOHA 1P59A 2NOFA 2JG6A 4PIIA 4AIAA 3OYFA 2XHIA 4EW0A 1KG3A 3CVTA 1XQOA 4E7KA 4UOBA 3OH9A 1HU0A 1WEFA 1LWWA 1LWYA 5AN4A 4E9HA 1MUDA 3OYDA 3L2WA 1N3CA 1KG2A 1PU8A 1DIZA 4OFEA 1M3QA 5FRMA 3OYLA 1RRSA 1MPGA 1RRQA 1KG5A 1KQJA 3OGDA 4OFHA 4AI4A 3OYCA 1KEAA 3KNTA 3L2UA 1WEIA 4YPRA 3FSPA 2NOBA 3F0ZA 4BACA 3OYNA 4HSBA 4E7JA 4BE1A 4B22A 5FROA 4ZTFA 1PU7A 4UNFA 3S3OA 1KG7A 5KN8A 4AI5A 3S3MA 2YG8A 3OYBA 2NOZA 3NNQA 2W03A 3D4VA 4B21A 2JHNA 1PVSA 4E7IA 1KG4A 3N0UA 3S6IA 3F10A 1P7MA 1MUNA 1KO9A 3OYMA 3N5NX 4B24A 4EJZA 2NOIA 3OYIA 4EVVA 1LMZA 1XG7A 3OYGA 4IKFA 2OFKA 4B23A 4YPHA 1XQPA 3OY9A 1FN7A 4E9EA 3OYHA 3CWAA 3KTUA 1YQMA 3L2QA 3OS0A 3L2RA 4DK9A 3CW7A 5FRNA 3OS1A 1N39A 1KG6A 3CWSA 1NGNA 2ABKA 4BE0A 4YOQA 3S3NA 5DPKA 2OFIA 2V75A 3I0XA 4NZGA 4ZTJA 3LCNA 5CHZA 1YQRA 4E9FA 1LWVA 2I5WA 2JHJA 3R2XC 2NOEA 1ORPA 4EA5A 3OH6A 2YG9A 3CVSA 1YQLA 1MUYA 1PU6A 5KN9A 3OYJA 2NOLA 1ORNA 3G0QA 1NKUA 4BDYA 3OYAA 4E7HA 3IH7A 3L2VA 3CWTA 3FHGA 3OYKA 1M3HA 2H56A 2W04A 1VRLA 2JPSA 3OS2A 4BDZA 3VW4A 3CWUA 3OYEA 1EBMA
chains in the Genus database with same CATH topology
3I0WA 4E9GA 4EW4A 1WEGA 4EA4A 3IHOA 1N3AA 4OFAA 3FHFA 4EJYA 1YQKA 2NOHA 1P59A 2NOFA 2JG6A 4PIIA 4AIAA 4EW0A 2XHIA 1KG3A 3CVTA 1XQOA 4UOBA 3OH9A 1HU0A 1WEFA 1LWWA 1LWYA 5AN4A 4E9HA 1MUDA 1N3CA 1KG2A 1PU8A 1DIZA 4OFEA 1M3QA 1RRSA 1MPGA 1RRQA 1KG5A 1KQJA 3OGDA 4OFHA 4AI4A 1KEAA 3KNTA 1WEIA 4YPRA 3FSPA 2NOBA 3F0ZA 4HSBA 4B22A 1PU7A 4UNFA 1KG7A 5KN8A 4AI5A 2YG8A 2NOZA 3D4VA 4B21A 2JHNA 1PVSA 1KG4A 3N0UA 3S6IA 3F10A 1P7MA 1MUNA 1KO9A 3N5NX 4B24A 4EJZA 4EVVA 1LMZA 1XG7A 2OFKA 4B23A 4YPHA 1XQPA 1FN7A 4E9EA 3CWAA 3KTUA 1YQMA 3CW7A 4DK9A 1N39A 1KG6A 3CWSA 1NGNA 2ABKA 4YOQA 5DPKA 2OFIA 3I0XA 5CHZA 1YQRA 4E9FA 1LWVA 2I5WA 2JHJA 2NOEA 1ORPA 4EA5A 3OH6A 2YG9A 3CVSA 1YQLA 1MUYA 1PU6A 5KN9A 2NOLA 1ORNA 3G0QA 1NKUA 3IH7A 3CWTA 3FHGA 1M3HA 2H56A 1VRLA 2NOIA 3CWUA 1EBMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I0W A;  4E9G A;  4EW4 A;  1WEG A;  4EA4 A;  3IHO A;  1N3A A;  4OFA A;  3FHF A;  4EJY A;  1YQK A;  2NOH A;  1P59 A;  2NOF A;  2JG6 A;  4PII A;  4AIA A;  4EW0 A;  2XHI A;  1KG3 A;  3CVT A;  1XQO A;  4UOB A;  3OH9 A;  1HU0 A;  1WEF A;  1LWW A;  1LWY A;  5AN4 A;  4E9H A;  1MUD A;  1N3C A;  1KG2 A;  1PU8 A;  1DIZ A;  4OFE A;  1M3Q A;  1RRS A;  1MPG A;  1RRQ A;  1KG5 A;  1KQJ A;  3OGD A;  4OFH A;  4AI4 A;  1KEA A;  3KNT A;  1WEI A;  4YPR A;  3FSP A;  2NOB A;  3F0Z A;  4HSB A;  4B22 A;  1PU7 A;  4UNF A;  1KG7 A;  5KN8 A;  4AI5 A;  2YG8 A;  2NOZ A;  3D4V A;  4B21 A;  2JHN A;  1PVS A;  1KG4 A;  3N0U A;  3S6I A;  3F10 A;  1P7M A;  1MUN A;  1KO9 A;  3N5N X;  4B24 A;  4EJZ A;  4EVV A;  1LMZ A;  1XG7 A;  2OFK A;  4B23 A;  4YPH A;  1XQP A;  1FN7 A;  4E9E A;  3CWA A;  3KTU A;  1YQM A;  3CW7 A;  4DK9 A;  1N39 A;  1KG6 A;  3CWS A;  1NGN A;  2ABK A;  4YOQ A;  5DPK A;  2OFI A;  3I0X A;  5CHZ A;  1YQR A;  4E9F A;  1LWV A;  2I5W A;  2JHJ A;  2NOE A;  1ORP A;  4EA5 A;  3OH6 A;  2YG9 A;  3CVS A;  1YQL A;  1MUY A;  1PU6 A;  5KN9 A;  2NOL A;  1ORN A;  3G0Q A;  1NKU A;  3IH7 A;  3CWT A;  3FHG A;  1M3H A;  2H56 A;  1VRL A;  2NOI A;  3CWU A;  1EBM A; 
#chains in the Genus database with same CATH topology
 3I0W A;  4E9G A;  4EW4 A;  1WEG A;  4EA4 A;  3IHO A;  1N3A A;  4BE2 A;  4E7L A;  1U84 A;  4OFA A;  3FHF A;  4EJY A;  1YQK A;  2NOH A;  1P59 A;  2NOF A;  2JG6 A;  4PII A;  4AIA A;  3OYF A;  2XHI A;  4EW0 A;  1KG3 A;  3CVT A;  1XQO A;  4E7K A;  4UOB A;  3OH9 A;  1HU0 A;  1WEF A;  1LWW A;  1LWY A;  5AN4 A;  4E9H A;  1MUD A;  3OYD A;  3L2W A;  1N3C A;  1KG2 A;  1PU8 A;  1DIZ A;  4OFE A;  1M3Q A;  5FRM A;  3OYL A;  1RRS A;  1MPG A;  1RRQ A;  1KG5 A;  1KQJ A;  3OGD A;  4OFH A;  4AI4 A;  3OYC A;  1KEA A;  3KNT A;  3L2U A;  1WEI A;  4YPR A;  3FSP A;  2NOB A;  3F0Z A;  4BAC A;  3OYN A;  4HSB A;  4E7J A;  4BE1 A;  4B22 A;  5FRO A;  4ZTF A;  1PU7 A;  4UNF A;  3S3O A;  1KG7 A;  5KN8 A;  4AI5 A;  3S3M A;  2YG8 A;  3OYB A;  2NOZ A;  3NNQ A;  2W03 A;  3D4V A;  4B21 A;  2JHN A;  1PVS A;  4E7I A;  1KG4 A;  3N0U A;  3S6I A;  3F10 A;  1P7M A;  1MUN A;  1KO9 A;  3OYM A;  3N5N X;  4B24 A;  4EJZ A;  2NOI A;  3OYI A;  4EVV A;  1LMZ A;  1XG7 A;  3OYG A;  4IKF A;  2OFK A;  4B23 A;  4YPH A;  1XQP A;  3OY9 A;  1FN7 A;  4E9E A;  3OYH A;  3CWA A;  3KTU A;  1YQM A;  3L2Q A;  3OS0 A;  3L2R A;  4DK9 A;  3CW7 A;  5FRN A;  3OS1 A;  1N39 A;  1KG6 A;  3CWS A;  1NGN A;  2ABK A;  4BE0 A;  4YOQ A;  3S3N A;  5DPK A;  2OFI A;  2V75 A;  3I0X A;  4NZG A;  4ZTJ A;  3LCN A;  5CHZ A;  1YQR A;  4E9F A;  1LWV A;  2I5W A;  2JHJ A;  3R2X C;  2NOE A;  1ORP A;  4EA5 A;  3OH6 A;  2YG9 A;  3CVS A;  1YQL A;  1MUY A;  1PU6 A;  5KN9 A;  3OYJ A;  2NOL A;  1ORN A;  3G0Q A;  1NKU A;  4BDY A;  3OYA A;  4E7H A;  3IH7 A;  3L2V A;  3CWT A;  3FHG A;  3OYK A;  1M3H A;  2H56 A;  2W04 A;  1VRL A;  2JPS A;  3OS2 A;  4BDZ A;  3VW4 A;  3CWU A;  3OYE A;  1EBM A; 
#chains in the Genus database with same CATH homology
 3I0W A;  4E9G A;  4EW4 A;  1WEG A;  4EA4 A;  3IHO A;  1N3A A;  4OFA A;  3FHF A;  4EJY A;  1YQK A;  2NOH A;  1P59 A;  2NOF A;  2JG6 A;  4PII A;  4AIA A;  4EW0 A;  2XHI A;  1KG3 A;  3CVT A;  1XQO A;  4UOB A;  3OH9 A;  1HU0 A;  1WEF A;  1LWW A;  1LWY A;  5AN4 A;  4E9H A;  1MUD A;  1N3C A;  1KG2 A;  1PU8 A;  1DIZ A;  4OFE A;  1M3Q A;  1RRS A;  1MPG A;  1RRQ A;  1KG5 A;  1KQJ A;  3OGD A;  4OFH A;  4AI4 A;  1KEA A;  3KNT A;  1WEI A;  4YPR A;  3FSP A;  2NOB A;  3F0Z A;  4HSB A;  4B22 A;  1PU7 A;  4UNF A;  1KG7 A;  5KN8 A;  4AI5 A;  2YG8 A;  2NOZ A;  3D4V A;  4B21 A;  2JHN A;  1PVS A;  1KG4 A;  3N0U A;  3S6I A;  3F10 A;  1P7M A;  1MUN A;  1KO9 A;  3N5N X;  4B24 A;  4EJZ A;  4EVV A;  1LMZ A;  1XG7 A;  2OFK A;  4B23 A;  4YPH A;  1XQP A;  1FN7 A;  4E9E A;  3CWA A;  3KTU A;  1YQM A;  3CW7 A;  4DK9 A;  1N39 A;  1KG6 A;  3CWS A;  1NGN A;  2ABK A;  4YOQ A;  5DPK A;  2OFI A;  3I0X A;  5CHZ A;  1YQR A;  4E9F A;  1LWV A;  2I5W A;  2JHJ A;  2NOE A;  1ORP A;  4EA5 A;  3OH6 A;  2YG9 A;  3CVS A;  1YQL A;  1MUY A;  1PU6 A;  5KN9 A;  2NOL A;  1ORN A;  3G0Q A;  1NKU A;  3IH7 A;  3CWT A;  3FHG A;  1M3H A;  2H56 A;  1VRL A;  2NOI A;  3CWU A;  1EBM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...