3KNTA

Crystal structure of methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
207
structure length
207
Chain Sequence
MMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYQEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase, lyase/dna
source organism Methanocaldococcus jannaschii
publication title The C-terminal Lysine of Ogg2 DNA Glycosylases is a Major Molecular Determinant for Guanine/8-Oxoguanine Distinction.
pubmed doi rcsb
molecule keywords N-glycosylase/DNA lyase
total genus 76
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2009-11-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3kntA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3kntA01
1XG7A 1KG4A 3N5NX 1KO9A 1MUDA 2NOLA 2JG6A 1MUYA 1XQPA 1KG7A 1RRSA 4E9HA 4B24A 4OFAA 1FN7A 1LWVA 3FHGA 4HSBA 2I5WA 3KNTA 4OFHA 1N3AA 1MUNA 2YG8A 1PU8A 1MPGA 3IHOA 3S6IA 3CWTA 4AIAA 1M3QA 1KG5A 4E9FA 3CWAA 3OH6A 2NOEA 4YOQA 1KEAA 1KG6A 2XHIA 3D4VA 5KN9A 5DPKA 3CW7A 4YPRA 1LMZA 4B22A 3F0ZA 2JHJA 4EJZA 1N3CA 1WEGA 1PU6A 1VRLA 3I0WA 4EA4A 1KQJA 1NGNA 4YPHA 1P59A 2NOBA 5KN8A 3CWSA 4EW0A 3FHFA 4EVVA 4AI4A 4UNFA 1NKUA 1EBMA 3OGDA 2JHNA 4EJYA 4AI5A 4PIIA 1M3HA 3KTUA 2H56A 1WEIA 3IH7A 2YG9A 4OFEA 4UOBA 1YQRA 1LWWA 1RRQA 3CWUA 4EA5A 1YQMA 4E9EA 4DK9A 4B21A 2NOIA 1KG3A 1KG2A 3CVSA 1HU0A 3N0UA 3CVTA 1YQLA 3I0XA 3G0QA 1DIZA 1WEFA 1XQOA 3OH9A 4EW4A 3FSPA 2NOHA 3F10A 1P7MA 4B23A 1LWYA 1YQKA 1PVSA 5CHZA 2ABKA 1ORNA 2NOZA 4E9GA 2OFIA 2NOFA 1PU7A 1N39A 2OFKA 5AN4A 1ORPA
chains in the Genus database with same CATH superfamily
1XG7A 1KG4A 3N5NX 1KO9A 1MUDA 4ZTJA 2NOLA 2JG6A 1MUYA 3OYGA 1XQPA 1KG7A 1RRSA 4E9HA 3OYLA 3S3MA 4B24A 4OFAA 1FN7A 1LWVA 3FHGA 4HSBA 4ZTFA 2I5WA 3KNTA 4OFHA 1N3AA 4BE2A 4E7JA 5FRMA 1MUNA 2YG8A 1PU8A 1MPGA 3IHOA 3S6IA 3CWTA 4AIAA 1M3QA 1KG5A 4E9FA 3CWAA 3OH6A 2NOEA 4YOQA 1KEAA 1KG6A 2XHIA 1U84A 3D4VA 5KN9A 3OYBA 4E7IA 5DPKA 3OYHA 3CW7A 3OYJA 4YPRA 1LMZA 4B22A 2JPSA 3F0ZA 2JHJA 4EJZA 1N3CA 1WEGA 1PU6A 1VRLA 3I0WA 4E7HA 4EA4A 1KQJA 3OY9A 3NNQA 1NGNA 4IKFA 3OYMA 4YPHA 1P59A 2NOBA 5KN8A 3CWSA 4EW0A 3OS1A 4BDZA 3FHFA 4EVVA 4AI4A 4UNFA 1NKUA 1EBMA 3OGDA 2JHNA 3L2VA 4BACA 3L2WA 4EJYA 3OYKA 4AI5A 5FROA 4PIIA 3OYDA 5FRNA 3L2QA 1M3HA 3KTUA 2H56A 4E7LA 2W03A 3VW4A 1WEIA 4E7KA 3OYIA 3IH7A 4BDYA 3OYCA 2YG9A 3OS2A 3S3NA 4OFEA 4UOBA 1YQRA 3S3OA 1LWWA 3L2UA 1RRQA 3CWUA 3OYEA 4EA5A 1YQMA 2V75A 4E9EA 4DK9A 3R2XC 4NZGA 4B21A 2NOIA 1KG3A 1KG2A 3CVSA 1HU0A 4BE1A 3N0UA 3CVTA 1YQLA 3I0XA 3G0QA 3OYFA 1DIZA 1WEFA 1XQOA 3OH9A 4EW4A 3L2RA 3FSPA 2NOHA 3F10A 1P7MA 4B23A 1LWYA 1YQKA 1PVSA 3OYNA 3LCNA 5CHZA 2ABKA 1ORNA 2NOZA 3OYAA 4BE0A 4E9GA 2OFIA 3OS0A 2NOFA 1PU7A 1N39A 2W04A 2OFKA 5AN4A 1ORPA
chains in the Genus database with same CATH topology
1XG7A 1KG4A 3N5NX 1KO9A 1MUDA 2NOLA 2JG6A 1MUYA 1XQPA 1KG7A 1RRSA 4E9HA 4B24A 4OFAA 1FN7A 1LWVA 3FHGA 4HSBA 2I5WA 3KNTA 4OFHA 1N3AA 1MUNA 2YG8A 1PU8A 1MPGA 3IHOA 3S6IA 3CWTA 4AIAA 1M3QA 1KG5A 4E9FA 3CWAA 3OH6A 2NOEA 4YOQA 1KEAA 1KG6A 2XHIA 3D4VA 5KN9A 5DPKA 3CW7A 4YPRA 1LMZA 4B22A 3F0ZA 2JHJA 4EJZA 1N3CA 1WEGA 1PU6A 1VRLA 3I0WA 4EA4A 1KQJA 1NGNA 4YPHA 1P59A 2NOBA 5KN8A 3CWSA 4EW0A 3FHFA 4EVVA 4AI4A 4UNFA 1NKUA 1EBMA 3OGDA 2JHNA 4EJYA 4AI5A 4PIIA 1M3HA 3KTUA 2H56A 1WEIA 3IH7A 2YG9A 4OFEA 4UOBA 1YQRA 1LWWA 1RRQA 3CWUA 4EA5A 1YQMA 4E9EA 4DK9A 4B21A 2NOIA 1KG3A 1KG2A 3CVSA 1HU0A 3N0UA 3CVTA 1YQLA 3I0XA 3G0QA 1DIZA 1WEFA 1XQOA 3OH9A 4EW4A 3FSPA 2NOHA 3F10A 1P7MA 4B23A 1LWYA 1YQKA 1PVSA 5CHZA 2ABKA 1ORNA 2NOZA 4E9GA 2OFIA 2NOFA 1PU7A 1N39A 2OFKA 5AN4A 1ORPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XG7 A;  1KG4 A;  3N5N X;  1KO9 A;  1MUD A;  2NOL A;  2JG6 A;  1MUY A;  1XQP A;  1KG7 A;  1RRS A;  4E9H A;  4B24 A;  4OFA A;  1FN7 A;  1LWV A;  3FHG A;  4HSB A;  2I5W A;  3KNT A;  4OFH A;  1N3A A;  1MUN A;  2YG8 A;  1PU8 A;  1MPG A;  3IHO A;  3S6I A;  3CWT A;  4AIA A;  1M3Q A;  1KG5 A;  4E9F A;  3CWA A;  3OH6 A;  2NOE A;  4YOQ A;  1KEA A;  1KG6 A;  2XHI A;  3D4V A;  5KN9 A;  5DPK A;  3CW7 A;  4YPR A;  1LMZ A;  4B22 A;  3F0Z A;  2JHJ A;  4EJZ A;  1N3C A;  1WEG A;  1PU6 A;  1VRL A;  3I0W A;  4EA4 A;  1KQJ A;  1NGN A;  4YPH A;  1P59 A;  2NOB A;  5KN8 A;  3CWS A;  4EW0 A;  3FHF A;  4EVV A;  4AI4 A;  4UNF A;  1NKU A;  1EBM A;  3OGD A;  2JHN A;  4EJY A;  4AI5 A;  4PII A;  1M3H A;  3KTU A;  2H56 A;  1WEI A;  3IH7 A;  2YG9 A;  4OFE A;  4UOB A;  1YQR A;  1LWW A;  1RRQ A;  3CWU A;  4EA5 A;  1YQM A;  4E9E A;  4DK9 A;  4B21 A;  2NOI A;  1KG3 A;  1KG2 A;  3CVS A;  1HU0 A;  3N0U A;  3CVT A;  1YQL A;  3I0X A;  3G0Q A;  1DIZ A;  1WEF A;  1XQO A;  3OH9 A;  4EW4 A;  3FSP A;  2NOH A;  3F10 A;  1P7M A;  4B23 A;  1LWY A;  1YQK A;  1PVS A;  5CHZ A;  2ABK A;  1ORN A;  2NOZ A;  4E9G A;  2OFI A;  2NOF A;  1PU7 A;  1N39 A;  2OFK A;  5AN4 A;  1ORP A; 
#chains in the Genus database with same CATH topology
 1XG7 A;  1KG4 A;  3N5N X;  1KO9 A;  1MUD A;  4ZTJ A;  2NOL A;  2JG6 A;  1MUY A;  3OYG A;  1XQP A;  1KG7 A;  1RRS A;  4E9H A;  3OYL A;  3S3M A;  4B24 A;  4OFA A;  1FN7 A;  1LWV A;  3FHG A;  4HSB A;  4ZTF A;  2I5W A;  3KNT A;  4OFH A;  1N3A A;  4BE2 A;  4E7J A;  5FRM A;  1MUN A;  2YG8 A;  1PU8 A;  1MPG A;  3IHO A;  3S6I A;  3CWT A;  4AIA A;  1M3Q A;  1KG5 A;  4E9F A;  3CWA A;  3OH6 A;  2NOE A;  4YOQ A;  1KEA A;  1KG6 A;  2XHI A;  1U84 A;  3D4V A;  5KN9 A;  3OYB A;  4E7I A;  5DPK A;  3OYH A;  3CW7 A;  3OYJ A;  4YPR A;  1LMZ A;  4B22 A;  2JPS A;  3F0Z A;  2JHJ A;  4EJZ A;  1N3C A;  1WEG A;  1PU6 A;  1VRL A;  3I0W A;  4E7H A;  4EA4 A;  1KQJ A;  3OY9 A;  3NNQ A;  1NGN A;  4IKF A;  3OYM A;  4YPH A;  1P59 A;  2NOB A;  5KN8 A;  3CWS A;  4EW0 A;  3OS1 A;  4BDZ A;  3FHF A;  4EVV A;  4AI4 A;  4UNF A;  1NKU A;  1EBM A;  3OGD A;  2JHN A;  3L2V A;  4BAC A;  3L2W A;  4EJY A;  3OYK A;  4AI5 A;  5FRO A;  4PII A;  3OYD A;  5FRN A;  3L2Q A;  1M3H A;  3KTU A;  2H56 A;  4E7L A;  2W03 A;  3VW4 A;  1WEI A;  4E7K A;  3OYI A;  3IH7 A;  4BDY A;  3OYC A;  2YG9 A;  3OS2 A;  3S3N A;  4OFE A;  4UOB A;  1YQR A;  3S3O A;  1LWW A;  3L2U A;  1RRQ A;  3CWU A;  3OYE A;  4EA5 A;  1YQM A;  2V75 A;  4E9E A;  4DK9 A;  3R2X C;  4NZG A;  4B21 A;  2NOI A;  1KG3 A;  1KG2 A;  3CVS A;  1HU0 A;  4BE1 A;  3N0U A;  3CVT A;  1YQL A;  3I0X A;  3G0Q A;  3OYF A;  1DIZ A;  1WEF A;  1XQO A;  3OH9 A;  4EW4 A;  3L2R A;  3FSP A;  2NOH A;  3F10 A;  1P7M A;  4B23 A;  1LWY A;  1YQK A;  1PVS A;  3OYN A;  3LCN A;  5CHZ A;  2ABK A;  1ORN A;  2NOZ A;  3OYA A;  4BE0 A;  4E9G A;  2OFI A;  3OS0 A;  2NOF A;  1PU7 A;  1N39 A;  2W04 A;  2OFK A;  5AN4 A;  1ORP A; 
#chains in the Genus database with same CATH homology
 1XG7 A;  1KG4 A;  3N5N X;  1KO9 A;  1MUD A;  2NOL A;  2JG6 A;  1MUY A;  1XQP A;  1KG7 A;  1RRS A;  4E9H A;  4B24 A;  4OFA A;  1FN7 A;  1LWV A;  3FHG A;  4HSB A;  2I5W A;  3KNT A;  4OFH A;  1N3A A;  1MUN A;  2YG8 A;  1PU8 A;  1MPG A;  3IHO A;  3S6I A;  3CWT A;  4AIA A;  1M3Q A;  1KG5 A;  4E9F A;  3CWA A;  3OH6 A;  2NOE A;  4YOQ A;  1KEA A;  1KG6 A;  2XHI A;  3D4V A;  5KN9 A;  5DPK A;  3CW7 A;  4YPR A;  1LMZ A;  4B22 A;  3F0Z A;  2JHJ A;  4EJZ A;  1N3C A;  1WEG A;  1PU6 A;  1VRL A;  3I0W A;  4EA4 A;  1KQJ A;  1NGN A;  4YPH A;  1P59 A;  2NOB A;  5KN8 A;  3CWS A;  4EW0 A;  3FHF A;  4EVV A;  4AI4 A;  4UNF A;  1NKU A;  1EBM A;  3OGD A;  2JHN A;  4EJY A;  4AI5 A;  4PII A;  1M3H A;  3KTU A;  2H56 A;  1WEI A;  3IH7 A;  2YG9 A;  4OFE A;  4UOB A;  1YQR A;  1LWW A;  1RRQ A;  3CWU A;  4EA5 A;  1YQM A;  4E9E A;  4DK9 A;  4B21 A;  2NOI A;  1KG3 A;  1KG2 A;  3CVS A;  1HU0 A;  3N0U A;  3CVT A;  1YQL A;  3I0X A;  3G0Q A;  1DIZ A;  1WEF A;  1XQO A;  3OH9 A;  4EW4 A;  3FSP A;  2NOH A;  3F10 A;  1P7M A;  4B23 A;  1LWY A;  1YQK A;  1PVS A;  5CHZ A;  2ABK A;  1ORN A;  2NOZ A;  4E9G A;  2OFI A;  2NOF A;  1PU7 A;  1N39 A;  2OFK A;  5AN4 A;  1ORP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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