3KORA

Crystal structure of a putative trp repressor from staphylococcus aureus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
100
structure length
100
Chain Sequence
SMQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Possible Trp repressor
publication title Crystal structure of a putative Trp repressor from Staphylococcus aureus
rcsb
source organism Staphylococcus aureus
total genus 30
structure length 100
sequence length 100
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3korA00
1WRTR 1TRRA 2OZ9R 3SSWN 1MI7R 2XDIA 3FRWA 3WRPA 3G1CA 1WRPR 1CO0A 3KORA 1JHGA 1WRSR 3SSXN 1RCSA 1TROA 1ZT9A
chains in the Genus database with same CATH superfamily
4YQAA 2OZ9R 1TRRA 4YQSA 1MI7R 3WRPA 3KNUA 1UAMA 4YPYA 3AXZA 4YQ8A 5D9FA 1JHGA 3IEFA 1WRSR 4MCCA 3SSXN 1CO0A 4YQ7A 4YQIA 1UAJA 1WRTR 2XDIA 4YVKA 3FRWA 4YVJA 4YQKA 4YQTA 4YQDA 4YPZA 4YQ3A 1RCSA 4YPWA 4YQRA 3QUVA 4YQ0A 4YQ2A 3SSWN 4MCBA 3KY7A 4YQJA 4YQGA 4YPXA 4YQ9A 1OY5A 4YQQA 4YQPA 4YQNA 1TROA 4YVIA 4YQCA 4YQ6A 4YQOA 4YQ5A 4H3ZA 1P9PA 4YVHA 4YQ1A 4YQ4A 1UALA 1UAKA 4IG6A 3G1CA 1WRPR 3KORA 4YVGA 4YQLA 4YQBA 4MCDA 4H3YA 1ZT9A
chains in the Genus database with same CATH topology
1WRTR 1TRRA 2OZ9R 3SSWN 1MI7R 2XDIA 3FRWA 3WRPA 3G1CA 1WRPR 1CO0A 3KORA 1JHGA 1WRSR 3SSXN 1RCSA 1TROA 1ZT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRT R;  1TRR A;  2OZ9 R;  3SSW N;  1MI7 R;  2XDI A;  3FRW A;  3WRP A;  3G1C A;  1WRP R;  1CO0 A;  3KOR A;  1JHG A;  1WRS R;  3SSX N;  1RCS A;  1TRO A;  1ZT9 A; 
#chains in the Genus database with same CATH topology
 4YQA A;  2OZ9 R;  1TRR A;  4YQS A;  1MI7 R;  3WRP A;  3KNU A;  1UAM A;  4YPY A;  3AXZ A;  4YQ8 A;  5D9F A;  1JHG A;  3IEF A;  1WRS R;  4MCC A;  3SSX N;  1CO0 A;  4YQ7 A;  4YQI A;  1UAJ A;  1WRT R;  2XDI A;  4YVK A;  3FRW A;  4YVJ A;  4YQK A;  4YQT A;  4YQD A;  4YPZ A;  4YQ3 A;  1RCS A;  4YPW A;  4YQR A;  3QUV A;  4YQ0 A;  4YQ2 A;  3SSW N;  4MCB A;  3KY7 A;  4YQJ A;  4YQG A;  4YPX A;  4YQ9 A;  1OY5 A;  4YQQ A;  4YQP A;  4YQN A;  1TRO A;  4YVI A;  4YQC A;  4YQ6 A;  4YQO A;  4YQ5 A;  4H3Z A;  1P9P A;  4YVH A;  4YQ1 A;  4YQ4 A;  1UAL A;  1UAK A;  4IG6 A;  3G1C A;  1WRP R;  3KOR A;  4YVG A;  4YQL A;  4YQB A;  4MCD A;  4H3Y A;  1ZT9 A; 
#chains in the Genus database with same CATH homology
 1WRT R;  1TRR A;  2OZ9 R;  3SSW N;  1MI7 R;  2XDI A;  3FRW A;  3WRP A;  3G1C A;  1WRP R;  1CO0 A;  3KOR A;  1JHG A;  1WRS R;  3SSX N;  1RCS A;  1TRO A;  1ZT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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