3KR3D

Crystal structure of igf-ii antibody complex
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
60
structure length
60
Chain Sequence
SETLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSRGIVEECCFRSCDLALLETYCATPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Insulin-like growth factor II
publication title A human monoclonal antibody against insulin-like growth factor-II blocks the growth of human hepatocellular carcinoma cell lines in vitro and in vivo.
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2009-11-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00049 Insulin Insulin/IGF/Relaxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.100.10 Mainly Alpha Orthogonal Bundle Insulin-like, subunit E Insulin-like 3kr3D00
2DSQC 1WQJI 4XSSB 3GF1A 1IGLA 1GZYB 1ZEIA 3LRIA 2GF1A 1BQTA 1H59A 1H02B 2L29B 1GZZB 5L3LA 1IMXA 1PMXA 2LWZA 2JZQA 2DSRI 1TGRA 2DSPI 6INSE 1SJUA 5L3NA 3KR3D 1B9GA 5L3MA 2KJIA 1EFEA 1GZRB 2KQPA
chains in the Genus database with same CATH superfamily
2DSQC 1WQJI 4XSSB 3GF1A 1IGLA 1GZYB 1ZEIA 3LRIA 2GF1A 1BQTA 1H59A 1H02B 2L14B 2L29B 1GZZB 5L3LA 1IMXA 3F2CA 1PMXA 3F2DA 2LWZA 3F2BA 2JZQA 2DSRI 1TGRA 2DSPI 6INSE 1SJUA 5L3NA 3KR3D 1B9GA 5L3MA 2KJIA 1EFEA 1GZRB 2KQPA
chains in the Genus database with same CATH topology
2DSQC 1WQJI 4XSSB 3GF1A 1IGLA 1GZYB 1ZEIA 3LRIA 2GF1A 1BQTA 1H59A 1H02B 2L29B 1GZZB 5L3LA 1IMXA 1PMXA 2LWZA 2JZQA 2DSRI 1TGRA 2DSPI 6INSE 1SJUA 5L3NA 3KR3D 1B9GA 5L3MA 2KJIA 1EFEA 1GZRB 2KQPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DSQ C;  1WQJ I;  4XSS B;  3GF1 A;  1IGL A;  1GZY B;  1ZEI A;  3LRI A;  2GF1 A;  1BQT A;  1H59 A;  1H02 B;  2L29 B;  1GZZ B;  5L3L A;  1IMX A;  1PMX A;  2LWZ A;  2JZQ A;  2DSR I;  1TGR A;  2DSP I;  6INS E;  1SJU A;  5L3N A;  3KR3 D;  1B9G A;  5L3M A;  2KJI A;  1EFE A;  1GZR B;  2KQP A; 
#chains in the Genus database with same CATH topology
 2DSQ C;  1WQJ I;  4XSS B;  3GF1 A;  1IGL A;  1GZY B;  1ZEI A;  3LRI A;  2GF1 A;  1BQT A;  1H59 A;  1H02 B;  2L14 B;  2L29 B;  1GZZ B;  5L3L A;  1IMX A;  3F2C A;  1PMX A;  3F2D A;  2LWZ A;  3F2B A;  2JZQ A;  2DSR I;  1TGR A;  2DSP I;  6INS E;  1SJU A;  5L3N A;  3KR3 D;  1B9G A;  5L3M A;  2KJI A;  1EFE A;  1GZR B;  2KQP A; 
#chains in the Genus database with same CATH homology
 2DSQ C;  1WQJ I;  4XSS B;  3GF1 A;  1IGL A;  1GZY B;  1ZEI A;  3LRI A;  2GF1 A;  1BQT A;  1H59 A;  1H02 B;  2L29 B;  1GZZ B;  5L3L A;  1IMX A;  1PMX A;  2LWZ A;  2JZQ A;  2DSR I;  1TGR A;  2DSP I;  6INS E;  1SJU A;  5L3N A;  3KR3 D;  1B9G A;  5L3M A;  2KJI A;  1EFE A;  1GZR B;  2KQP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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