3KRQA

Crystal structure of the complex of lactoperoxidase with a potent inhibitor amino-triazole at 2.2a resolution
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Lactoperoxidase
publication title First structural evidence for the mode of diffusion of aromatic ligands and ligand-induced closure of the hydrophobic channel in heme peroxidases
pubmed doi rcsb
total genus 172
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3krqA00
3PY4A 5HPWA 3NTGA 3S4FA 3RKEA 3KRQA 4PH9A 1PTHA 2IPSA 2O86A 5JVYA 5IKQA 4RRXA 6COXA 4M11A 5IKRA 1PXXA 1DDXA 3HS7A 3OGWA 3F9PC 4O1ZA 1PGEA 2PUMA 1CVUA 2R5LA 3V6QA 3FAQA 5IKTA 4OTJA 3NTBA 4KVLA 4KVKA 3N8WA 3N8YB 5COXA 4GN6A 4M10A 2E9EA 4Y55A 2AYLA 2OYUP 3I6NA 4OEKA 4RRYA 3GCJA 4N7AA 4COXA 3R5OA 4FM5A 4HHSA 3MQEA 3R4XA 3ERIA 5FDQA 5GLSA 5FF1A 3GCLA 3SXVA 3QMOA 2QQTA 3Q7DA 3LN0A 3ZS0C 5JVZA 4QJQA 4RRWA 3QH0A 4QYQA 3BXIA 1MHLC 4RUTA 3TZIA 3NT1A 4KSZA 4RS0A 2EFBA 1DNWC 3HS5A 3QF1A 1DIYA 1MYPC 1D5LC 1FE2A 1CQEA 5KIRA 4DL1C 3N8YA 4OTYA 3KRKA 4LJJA 3FNLA 4NJBA 1U67A 1CXPC 1D7WC 4RRZA 1HT8A 3OLTA 2QPKA 4C1MC 5JW1A 1EQHA 3LN1A 5FIWC 2Z5ZA 3N8XA 1PRHA 2EHAA 3R5QA 3NIUA 4MSFA 3QL6A 1IGZA 3OLUA 5IKVA 3MDLA 3RR3A 3NYHA 4PNXA 3KK6A 3HS6A 4GM7A 1IGXA 2IKCA 1CX2A 4KVJA 2QRBA 3NAKA 4NT3A 2OJVA 5GH0A 3TGYA 3N8VA 5F19A 5B72A 1EBVA 1DNUC 1EQGA 3Q9KA 3R55A 4IG5A 1Q4GA 2GJMA 3ERHA 3ZS1C 3N8FA 3N8ZA 3GCKA 4E1GA 1D2VC 4Z0LA 3GC1A 5F1AA 3PGHA 1HT5A 3N8WB 2OYEP 2NQXA 4HHRA 2PT3A 3UBAA
chains in the Genus database with same CATH superfamily
3PY4A 5HPWA 3NTGA 3S4FA 3RKEA 3KRQA 4PH9A 1PTHA 2IPSA 2O86A 5JVYA 5IKQA 4RRXA 6COXA 4M11A 5IKRA 1PXXA 1DDXA 3HS7A 3OGWA 3F9PC 4O1ZA 1PGEA 2PUMA 1CVUA 2R5LA 3V6QA 3FAQA 5IKTA 4OTJA 3NTBA 4KVLA 4KVKA 3N8WA 3N8YB 5COXA 4GN6A 4M10A 2E9EA 4Y55A 2AYLA 2OYUP 3I6NA 4OEKA 4RRYA 3GCJA 4N7AA 4COXA 3R5OA 4FM5A 4HHSA 3MQEA 3R4XA 3ERIA 5FDQA 5GLSA 5FF1A 3GCLA 3SXVA 3QMOA 2QQTA 3Q7DA 3LN0A 3ZS0C 5JVZA 4QJQA 4RRWA 3QH0A 4QYQA 3BXIA 1MHLC 4RUTA 3TZIA 3NT1A 4KSZA 4RS0A 2EFBA 1DNWC 3HS5A 3QF1A 1DIYA 1MYPC 1D5LC 1FE2A 1CQEA 5KIRA 4DL1C 3N8YA 4OTYA 3KRKA 4LJJA 3FNLA 4NJBA 1U67A 1CXPC 1D7WC 4RRZA 1HT8A 3OLTA 2QPKA 4C1MC 5JW1A 1EQHA 3LN1A 5FIWC 2Z5ZA 3N8XA 1PRHA 2EHAA 3R5QA 3NIUA 4MSFA 3QL6A 1IGZA 3OLUA 5IKVA 3MDLA 3RR3A 3NYHA 4PNXA 3KK6A 3HS6A 4GM7A 1IGXA 2IKCA 1CX2A 4KVJA 2QRBA 3NAKA 4NT3A 2OJVA 5GH0A 3TGYA 3N8VA 5F19A 5B72A 1EBVA 1DNUC 1EQGA 3Q9KA 3R55A 4IG5A 1Q4GA 2GJMA 3ERHA 3ZS1C 3N8FA 3N8ZA 3GCKA 4E1GA 1D2VC 4Z0LA 3GC1A 5F1AA 3PGHA 1HT5A 3N8WB 2OYEP 2NQXA 4HHRA 2PT3A 3UBAA
chains in the Genus database with same CATH topology
3PY4A 5HPWA 3NTGA 3S4FA 3RKEA 3KRQA 4PH9A 1PTHA 2IPSA 2O86A 5JVYA 5IKQA 4RRXA 6COXA 4M11A 5IKRA 1PXXA 1DDXA 3HS7A 3OGWA 3F9PC 4O1ZA 1PGEA 2PUMA 1CVUA 2R5LA 3V6QA 3FAQA 5IKTA 4OTJA 3NTBA 4KVLA 4KVKA 3N8WA 3N8YB 5COXA 4GN6A 4M10A 2E9EA 4Y55A 2AYLA 2OYUP 3I6NA 4OEKA 4RRYA 3GCJA 4N7AA 4COXA 3R5OA 4FM5A 4HHSA 3MQEA 3R4XA 3ERIA 5FDQA 5GLSA 5FF1A 3GCLA 3SXVA 3QMOA 2QQTA 3Q7DA 3LN0A 3ZS0C 5JVZA 4QJQA 4RRWA 3QH0A 4QYQA 3BXIA 1MHLC 4RUTA 3TZIA 3NT1A 4KSZA 4RS0A 2EFBA 1DNWC 3HS5A 3QF1A 1DIYA 1MYPC 1D5LC 1FE2A 1CQEA 5KIRA 4DL1C 3N8YA 4OTYA 3KRKA 4LJJA 3FNLA 4NJBA 1U67A 1CXPC 1D7WC 4RRZA 1HT8A 3OLTA 2QPKA 4C1MC 5JW1A 1EQHA 3LN1A 5FIWC 2Z5ZA 3N8XA 1PRHA 2EHAA 3R5QA 3NIUA 4MSFA 3QL6A 1IGZA 3OLUA 5IKVA 3MDLA 3RR3A 3NYHA 4PNXA 3KK6A 3HS6A 4GM7A 1IGXA 2IKCA 1CX2A 4KVJA 2QRBA 3NAKA 4NT3A 2OJVA 5GH0A 3TGYA 3N8VA 5F19A 5B72A 1EBVA 1DNUC 1EQGA 3Q9KA 3R55A 4IG5A 1Q4GA 2GJMA 3ERHA 3ZS1C 3N8FA 3N8ZA 3GCKA 4E1GA 1D2VC 4Z0LA 3GC1A 5F1AA 3PGHA 1HT5A 3N8WB 2OYEP 2NQXA 4HHRA 2PT3A 3UBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PY4 A;  5HPW A;  3NTG A;  3S4F A;  3RKE A;  3KRQ A;  4PH9 A;  1PTH A;  2IPS A;  2O86 A;  5JVY A;  5IKQ A;  4RRX A;  6COX A;  4M11 A;  5IKR A;  1PXX A;  1DDX A;  3HS7 A;  3OGW A;  3F9P C;  4O1Z A;  1PGE A;  2PUM A;  1CVU A;  2R5L A;  3V6Q A;  3FAQ A;  5IKT A;  4OTJ A;  3NTB A;  4KVL A;  4KVK A;  3N8W A;  3N8Y B;  5COX A;  4GN6 A;  4M10 A;  2E9E A;  4Y55 A;  2AYL A;  2OYU P;  3I6N A;  4OEK A;  4RRY A;  3GCJ A;  4N7A A;  4COX A;  3R5O A;  4FM5 A;  4HHS A;  3MQE A;  3R4X A;  3ERI A;  5FDQ A;  5GLS A;  5FF1 A;  3GCL A;  3SXV A;  3QMO A;  2QQT A;  3Q7D A;  3LN0 A;  3ZS0 C;  5JVZ A;  4QJQ A;  4RRW A;  3QH0 A;  4QYQ A;  3BXI A;  1MHL C;  4RUT A;  3TZI A;  3NT1 A;  4KSZ A;  4RS0 A;  2EFB A;  1DNW C;  3HS5 A;  3QF1 A;  1DIY A;  1MYP C;  1D5L C;  1FE2 A;  1CQE A;  5KIR A;  4DL1 C;  3N8Y A;  4OTY A;  3KRK A;  4LJJ A;  3FNL A;  4NJB A;  1U67 A;  1CXP C;  1D7W C;  4RRZ A;  1HT8 A;  3OLT A;  2QPK A;  4C1M C;  5JW1 A;  1EQH A;  3LN1 A;  5FIW C;  2Z5Z A;  3N8X A;  1PRH A;  2EHA A;  3R5Q A;  3NIU A;  4MSF A;  3QL6 A;  1IGZ A;  3OLU A;  5IKV A;  3MDL A;  3RR3 A;  3NYH A;  4PNX A;  3KK6 A;  3HS6 A;  4GM7 A;  1IGX A;  2IKC A;  1CX2 A;  4KVJ A;  2QRB A;  3NAK A;  4NT3 A;  2OJV A;  5GH0 A;  3TGY A;  3N8V A;  5F19 A;  5B72 A;  1EBV A;  1DNU C;  1EQG A;  3Q9K A;  3R55 A;  4IG5 A;  1Q4G A;  2GJM A;  3ERH A;  3ZS1 C;  3N8F A;  3N8Z A;  3GCK A;  4E1G A;  1D2V C;  4Z0L A;  3GC1 A;  5F1A A;  3PGH A;  1HT5 A;  3N8W B;  2OYE P;  2NQX A;  4HHR A;  2PT3 A;  3UBA A; 
#chains in the Genus database with same CATH topology
 3PY4 A;  5HPW A;  3NTG A;  3S4F A;  3RKE A;  3KRQ A;  4PH9 A;  1PTH A;  2IPS A;  2O86 A;  5JVY A;  5IKQ A;  4RRX A;  6COX A;  4M11 A;  5IKR A;  1PXX A;  1DDX A;  3HS7 A;  3OGW A;  3F9P C;  4O1Z A;  1PGE A;  2PUM A;  1CVU A;  2R5L A;  3V6Q A;  3FAQ A;  5IKT A;  4OTJ A;  3NTB A;  4KVL A;  4KVK A;  3N8W A;  3N8Y B;  5COX A;  4GN6 A;  4M10 A;  2E9E A;  4Y55 A;  2AYL A;  2OYU P;  3I6N A;  4OEK A;  4RRY A;  3GCJ A;  4N7A A;  4COX A;  3R5O A;  4FM5 A;  4HHS A;  3MQE A;  3R4X A;  3ERI A;  5FDQ A;  5GLS A;  5FF1 A;  3GCL A;  3SXV A;  3QMO A;  2QQT A;  3Q7D A;  3LN0 A;  3ZS0 C;  5JVZ A;  4QJQ A;  4RRW A;  3QH0 A;  4QYQ A;  3BXI A;  1MHL C;  4RUT A;  3TZI A;  3NT1 A;  4KSZ A;  4RS0 A;  2EFB A;  1DNW C;  3HS5 A;  3QF1 A;  1DIY A;  1MYP C;  1D5L C;  1FE2 A;  1CQE A;  5KIR A;  4DL1 C;  3N8Y A;  4OTY A;  3KRK A;  4LJJ A;  3FNL A;  4NJB A;  1U67 A;  1CXP C;  1D7W C;  4RRZ A;  1HT8 A;  3OLT A;  2QPK A;  4C1M C;  5JW1 A;  1EQH A;  3LN1 A;  5FIW C;  2Z5Z A;  3N8X A;  1PRH A;  2EHA A;  3R5Q A;  3NIU A;  4MSF A;  3QL6 A;  1IGZ A;  3OLU A;  5IKV A;  3MDL A;  3RR3 A;  3NYH A;  4PNX A;  3KK6 A;  3HS6 A;  4GM7 A;  1IGX A;  2IKC A;  1CX2 A;  4KVJ A;  2QRB A;  3NAK A;  4NT3 A;  2OJV A;  5GH0 A;  3TGY A;  3N8V A;  5F19 A;  5B72 A;  1EBV A;  1DNU C;  1EQG A;  3Q9K A;  3R55 A;  4IG5 A;  1Q4G A;  2GJM A;  3ERH A;  3ZS1 C;  3N8F A;  3N8Z A;  3GCK A;  4E1G A;  1D2V C;  4Z0L A;  3GC1 A;  5F1A A;  3PGH A;  1HT5 A;  3N8W B;  2OYE P;  2NQX A;  4HHR A;  2PT3 A;  3UBA A; 
#chains in the Genus database with same CATH homology
 3PY4 A;  5HPW A;  3NTG A;  3S4F A;  3RKE A;  3KRQ A;  4PH9 A;  1PTH A;  2IPS A;  2O86 A;  5JVY A;  5IKQ A;  4RRX A;  6COX A;  4M11 A;  5IKR A;  1PXX A;  1DDX A;  3HS7 A;  3OGW A;  3F9P C;  4O1Z A;  1PGE A;  2PUM A;  1CVU A;  2R5L A;  3V6Q A;  3FAQ A;  5IKT A;  4OTJ A;  3NTB A;  4KVL A;  4KVK A;  3N8W A;  3N8Y B;  5COX A;  4GN6 A;  4M10 A;  2E9E A;  4Y55 A;  2AYL A;  2OYU P;  3I6N A;  4OEK A;  4RRY A;  3GCJ A;  4N7A A;  4COX A;  3R5O A;  4FM5 A;  4HHS A;  3MQE A;  3R4X A;  3ERI A;  5FDQ A;  5GLS A;  5FF1 A;  3GCL A;  3SXV A;  3QMO A;  2QQT A;  3Q7D A;  3LN0 A;  3ZS0 C;  5JVZ A;  4QJQ A;  4RRW A;  3QH0 A;  4QYQ A;  3BXI A;  1MHL C;  4RUT A;  3TZI A;  3NT1 A;  4KSZ A;  4RS0 A;  2EFB A;  1DNW C;  3HS5 A;  3QF1 A;  1DIY A;  1MYP C;  1D5L C;  1FE2 A;  1CQE A;  5KIR A;  4DL1 C;  3N8Y A;  4OTY A;  3KRK A;  4LJJ A;  3FNL A;  4NJB A;  1U67 A;  1CXP C;  1D7W C;  4RRZ A;  1HT8 A;  3OLT A;  2QPK A;  4C1M C;  5JW1 A;  1EQH A;  3LN1 A;  5FIW C;  2Z5Z A;  3N8X A;  1PRH A;  2EHA A;  3R5Q A;  3NIU A;  4MSF A;  3QL6 A;  1IGZ A;  3OLU A;  5IKV A;  3MDL A;  3RR3 A;  3NYH A;  4PNX A;  3KK6 A;  3HS6 A;  4GM7 A;  1IGX A;  2IKC A;  1CX2 A;  4KVJ A;  2QRB A;  3NAK A;  4NT3 A;  2OJV A;  5GH0 A;  3TGY A;  3N8V A;  5F19 A;  5B72 A;  1EBV A;  1DNU C;  1EQG A;  3Q9K A;  3R55 A;  4IG5 A;  1Q4G A;  2GJM A;  3ERH A;  3ZS1 C;  3N8F A;  3N8Z A;  3GCK A;  4E1G A;  1D2V C;  4Z0L A;  3GC1 A;  5F1A A;  3PGH A;  1HT5 A;  3N8W B;  2OYE P;  2NQX A;  4HHR A;  2PT3 A;  3UBA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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