3KS0A

Crystal structure of the heme domain of flavocytochrome b2 in complex with fab b2b4
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
92
structure length
92
Chain Sequence
MNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLGPLQGSMPPELVCPPY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural evidence for the functional importance of the heme domain mobility in flavocytochrome b2.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Saccharomyces cerevisiae
molecule keywords heme domain of flavocytochrome b2
total genus 20
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature ec 1.1.2.3: L-lactate dehydrogenase (cytochrome).
pdb deposition date 2009-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 3ks0A00
1ES1A 4X8YA 3NERA 1FCBA 1I87A 1U9MA 2I96A 1I5UA 1T0GA 1J0QA 1AW3A 1AWPA 1MNYA 1DO9A 3X34A 1JEXA 2M33A 1M20A 1HKOA 1EUEA 1BFXA 1IB7A 1BLVA 1KBIA 1IETA 4HILA 1I8CA 2IBJA 1B5MA 1EHBA 1CXYA 3MUSA 1X3XA 1LQXA 1J03A 1U9UA 3LF5A 1F04A 4B8NA 1ICCA 1B5BA 3X35A 4HINA 3X33A 2AXXA 1CYOA 3OZZB 1AXXA 1LR6A 1NX7A 2I89A 1F03A 2OZ0A 3X32A 1B5AA 1LJ0A 1M2MA 1AQAA 1MJ4A 2KEOA 1LDCA 1IEUA 1LTDA 1M2IA 1SOXA 1LCOA 3KS0A 1SH4A 1M59A
chains in the Genus database with same CATH superfamily
1ES1A 4X8YA 3NERA 1FCBA 1I87A 1U9MA 2I96A 1I5UA 1T0GA 1J0QA 1AW3A 1AWPA 1MNYA 1DO9A 3X34A 1JEXA 2M33A 1M20A 1HKOA 1EUEA 1BFXA 1IB7A 1BLVA 1KBIA 1IETA 4HILA 1I8CA 2IBJA 1B5MA 1EHBA 1CXYA 3MUSA 1X3XA 1LQXA 1J03A 1U9UA 3LF5A 1F04A 4B8NA 1ICCA 1B5BA 3X35A 4HINA 3X33A 2AXXA 1CYOA 3OZZB 1AXXA 1LR6A 1NX7A 2I89A 1F03A 2OZ0A 3X32A 1B5AA 1LJ0A 1M2MA 1AQAA 1MJ4A 2KEOA 1LDCA 1IEUA 1LTDA 1M2IA 1SOXA 1LCOA 3KS0A 1SH4A 1M59A
chains in the Genus database with same CATH topology
1ES1A 4X8YA 3NERA 1FCBA 1I87A 1U9MA 2I96A 1I5UA 1T0GA 1J0QA 1AW3A 1AWPA 1MNYA 1DO9A 3X34A 1JEXA 2M33A 1M20A 1HKOA 1EUEA 1BFXA 1IB7A 1BLVA 1KBIA 1IETA 4HILA 1I8CA 2IBJA 1B5MA 1EHBA 1CXYA 3MUSA 1X3XA 1LQXA 1J03A 1U9UA 3LF5A 1F04A 4B8NA 1ICCA 1B5BA 3X35A 4HINA 3X33A 2AXXA 1CYOA 3OZZB 1AXXA 1LR6A 1NX7A 2I89A 1F03A 2OZ0A 3X32A 1B5AA 1LJ0A 1M2MA 1AQAA 1MJ4A 2KEOA 1LDCA 1IEUA 1LTDA 1M2IA 1SOXA 1LCOA 3KS0A 1SH4A 1M59A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ES1 A;  4X8Y A;  3NER A;  1FCB A;  1I87 A;  1U9M A;  2I96 A;  1I5U A;  1T0G A;  1J0Q A;  1AW3 A;  1AWP A;  1MNY A;  1DO9 A;  3X34 A;  1JEX A;  2M33 A;  1M20 A;  1HKO A;  1EUE A;  1BFX A;  1IB7 A;  1BLV A;  1KBI A;  1IET A;  4HIL A;  1I8C A;  2IBJ A;  1B5M A;  1EHB A;  1CXY A;  3MUS A;  1X3X A;  1LQX A;  1J03 A;  1U9U A;  3LF5 A;  1F04 A;  4B8N A;  1ICC A;  1B5B A;  3X35 A;  4HIN A;  3X33 A;  2AXX A;  1CYO A;  3OZZ B;  1AXX A;  1LR6 A;  1NX7 A;  2I89 A;  1F03 A;  2OZ0 A;  3X32 A;  1B5A A;  1LJ0 A;  1M2M A;  1AQA A;  1MJ4 A;  2KEO A;  1LDC A;  1IEU A;  1LTD A;  1M2I A;  1SOX A;  1LCO A;  3KS0 A;  1SH4 A;  1M59 A; 
#chains in the Genus database with same CATH topology
 1ES1 A;  4X8Y A;  3NER A;  1FCB A;  1I87 A;  1U9M A;  2I96 A;  1I5U A;  1T0G A;  1J0Q A;  1AW3 A;  1AWP A;  1MNY A;  1DO9 A;  3X34 A;  1JEX A;  2M33 A;  1M20 A;  1HKO A;  1EUE A;  1BFX A;  1IB7 A;  1BLV A;  1KBI A;  1IET A;  4HIL A;  1I8C A;  2IBJ A;  1B5M A;  1EHB A;  1CXY A;  3MUS A;  1X3X A;  1LQX A;  1J03 A;  1U9U A;  3LF5 A;  1F04 A;  4B8N A;  1ICC A;  1B5B A;  3X35 A;  4HIN A;  3X33 A;  2AXX A;  1CYO A;  3OZZ B;  1AXX A;  1LR6 A;  1NX7 A;  2I89 A;  1F03 A;  2OZ0 A;  3X32 A;  1B5A A;  1LJ0 A;  1M2M A;  1AQA A;  1MJ4 A;  2KEO A;  1LDC A;  1IEU A;  1LTD A;  1M2I A;  1SOX A;  1LCO A;  3KS0 A;  1SH4 A;  1M59 A; 
#chains in the Genus database with same CATH homology
 1ES1 A;  4X8Y A;  3NER A;  1FCB A;  1I87 A;  1U9M A;  2I96 A;  1I5U A;  1T0G A;  1J0Q A;  1AW3 A;  1AWP A;  1MNY A;  1DO9 A;  3X34 A;  1JEX A;  2M33 A;  1M20 A;  1HKO A;  1EUE A;  1BFX A;  1IB7 A;  1BLV A;  1KBI A;  1IET A;  4HIL A;  1I8C A;  2IBJ A;  1B5M A;  1EHB A;  1CXY A;  3MUS A;  1X3X A;  1LQX A;  1J03 A;  1U9U A;  3LF5 A;  1F04 A;  4B8N A;  1ICC A;  1B5B A;  3X35 A;  4HIN A;  3X33 A;  2AXX A;  1CYO A;  3OZZ B;  1AXX A;  1LR6 A;  1NX7 A;  2I89 A;  1F03 A;  2OZ0 A;  3X32 A;  1B5A A;  1LJ0 A;  1M2M A;  1AQA A;  1MJ4 A;  2KEO A;  1LDC A;  1IEU A;  1LTD A;  1M2I A;  1SOX A;  1LCO A;  3KS0 A;  1SH4 A;  1M59 A; 
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