3KTPA

Structural basis of gw182 recognition by poly(a)-binding protein
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
78
structure length
78
Chain Sequence
PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Polyadenylate-binding protein 1
publication title Structural basis of binding of P-body-associated proteins GW182 and ataxin-2 by the Mlle domain of poly(A)-binding protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 78
sequence length 78
ec nomenclature
pdb deposition date 2009-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00658 PABP Poly-adenylate binding protein, unique domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1900.10 Mainly Alpha Orthogonal Bundle c-terminal domain of poly(a) binding protein c-terminal domain of poly(a) binding protein 3ktpA01
1JH4A 3KUTA 3KTRA 3PTHA 3KUJA 2HH6A 2O4TA 1NMRA 2RQHB 1I2TA 2DYDA 3KUIA 3KUSA 1G9LA 2RQGB 2O3LA 3PKNA 4IVEA 1IFWA 3KURA 2X04A 3NTWA 3KTPA 1JGNA
chains in the Genus database with same CATH superfamily
1JH4A 3KUTA 3KTRA 3PTHA 3KUJA 2HH6A 2O4TA 1NMRA 2RQHB 1I2TA 2DYDA 3KUIA 2GHJA 3M92A 3KUSA 1G9LA 2RQGB 2O3LA 3PKNA 4IVEA 1IFWA 2LKLA 3KURA 1GYZA 2X04A 3NTWA 3KTPA 4KXFB 1JGNA
chains in the Genus database with same CATH topology
1JH4A 3KUTA 3KTRA 3PTHA 3KUJA 2HH6A 2O4TA 1NMRA 2RQHB 1I2TA 2DYDA 3KUIA 3M92A 3KUSA 1G9LA 2RQGB 2O3LA 3PKNA 4IVEA 1IFWA 2LKLA 3KURA 2X04A 3NTWA 3KTPA 4KXFB 1JGNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JH4 A;  3KUT A;  3KTR A;  3PTH A;  3KUJ A;  2HH6 A;  2O4T A;  1NMR A;  2RQH B;  1I2T A;  2DYD A;  3KUI A;  3KUS A;  1G9L A;  2RQG B;  2O3L A;  3PKN A;  4IVE A;  1IFW A;  3KUR A;  2X04 A;  3NTW A;  3KTP A;  1JGN A; 
#chains in the Genus database with same CATH topology
 1JH4 A;  3KUT A;  3KTR A;  3PTH A;  3KUJ A;  2HH6 A;  2O4T A;  1NMR A;  2RQH B;  1I2T A;  2DYD A;  3KUI A;  2GHJ A;  3M92 A;  3KUS A;  1G9L A;  2RQG B;  2O3L A;  3PKN A;  4IVE A;  1IFW A;  2LKL A;  3KUR A;  1GYZ A;  2X04 A;  3NTW A;  3KTP A;  4KXF B;  1JGN A; 
#chains in the Genus database with same CATH homology
 1JH4 A;  3KUT A;  3KTR A;  3PTH A;  3KUJ A;  2HH6 A;  2O4T A;  1NMR A;  2RQH B;  1I2T A;  2DYD A;  3KUI A;  3M92 A;  3KUS A;  1G9L A;  2RQG B;  2O3L A;  3PKN A;  4IVE A;  1IFW A;  2LKL A;  3KUR A;  2X04 A;  3NTW A;  3KTP A;  4KXF B;  1JGN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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