3KTRA

Structural basis of ataxin-2 recognition by poly(a)-binding protein
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
81
structure length
81
Chain Sequence
SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Polyadenylate-binding protein 1
publication title Structural basis of binding of P-body-associated proteins GW182 and ataxin-2 by the Mlle domain of poly(A)-binding protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2009-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00658 PABP Poly-adenylate binding protein, unique domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1900.10 Mainly Alpha Orthogonal Bundle c-terminal domain of poly(a) binding protein c-terminal domain of poly(a) binding protein 3ktrA01
2HH6A 2O3LA 3KUSA 4IVEA 3KUIA 1IFWA 2RQGB 2DYDA 2RQHB 1JH4A 1JGNA 3KUJA 3KTRA 3KTPA 3KUTA 2X04A 2O4TA 3PKNA 1I2TA 3PTHA 1G9LA 1NMRA 3NTWA 3KURA
chains in the Genus database with same CATH superfamily
1GYZA 2GHJA 2HH6A 2O3LA 3KUSA 3KUIA 4IVEA 1IFWA 2RQGB 2LKLA 2DYDA 2RQHB 1JH4A 1JGNA 3M92A 3KUJA 3KTRA 3KTPA 3KUTA 4KXFB 2X04A 2O4TA 3PKNA 1I2TA 3PTHA 1G9LA 1NMRA 3NTWA 3KURA
chains in the Genus database with same CATH topology
2HH6A 2O3LA 3KUSA 3KUIA 4IVEA 1IFWA 2RQGB 2LKLA 2DYDA 2RQHB 1JH4A 1JGNA 3M92A 3KUJA 3KTRA 3KTPA 3KUTA 4KXFB 2X04A 2O4TA 3PKNA 1I2TA 3PTHA 1G9LA 1NMRA 3NTWA 3KURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HH6 A;  2O3L A;  3KUS A;  4IVE A;  3KUI A;  1IFW A;  2RQG B;  2DYD A;  2RQH B;  1JH4 A;  1JGN A;  3KUJ A;  3KTR A;  3KTP A;  3KUT A;  2X04 A;  2O4T A;  3PKN A;  1I2T A;  3PTH A;  1G9L A;  1NMR A;  3NTW A;  3KUR A; 
#chains in the Genus database with same CATH topology
 1GYZ A;  2GHJ A;  2HH6 A;  2O3L A;  3KUS A;  3KUI A;  4IVE A;  1IFW A;  2RQG B;  2LKL A;  2DYD A;  2RQH B;  1JH4 A;  1JGN A;  3M92 A;  3KUJ A;  3KTR A;  3KTP A;  3KUT A;  4KXF B;  2X04 A;  2O4T A;  3PKN A;  1I2T A;  3PTH A;  1G9L A;  1NMR A;  3NTW A;  3KUR A; 
#chains in the Genus database with same CATH homology
 2HH6 A;  2O3L A;  3KUS A;  3KUI A;  4IVE A;  1IFW A;  2RQG B;  2LKL A;  2DYD A;  2RQH B;  1JH4 A;  1JGN A;  3M92 A;  3KUJ A;  3KTR A;  3KTP A;  3KUT A;  4KXF B;  2X04 A;  2O4T A;  3PKN A;  1I2T A;  3PTH A;  1G9L A;  1NMR A;  3NTW A;  3KUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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