3KXCC

Mutant transport protein
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
157
structure length
136
Chain Sequence
ADEALFLLLHNEMVSGQGEVENGRCITKLENMGFRVGQGLIERFTKFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Trafficking protein particle complex subunit 3
publication title Characterization of the self-palmitoylation activity of the transport protein particle component Bet3
pubmed doi rcsb
source organism Homo sapiens
total genus 45
structure length 136
sequence length 157
ec nomenclature
pdb deposition date 2009-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 3kxcC00
2OSDA 2OSOA 3NJCA 2J3TB 3KXCA 3CUED 3CUEB 2CFHC 2J3RB 1WC9A 1SZ7A 2C0JA 3KXCC 2J3WD 2J3WB 2BJNA 2J3TA 2C0JB 2CFHA 1WC8A 2J3RA 2PWNA
chains in the Genus database with same CATH superfamily
3N1FA 2OSDA 3D1MA 3N1PB 2OSOA 4OX5A 2WFQA 3NJCA 2J3TB 3KXCA 4MURA 2WFRA 3MXWA 3K7IB 3N1GA 3CUED 3CUEB 2CFHC 2J3RB 1U10A 4D0YA 1WC9A 5HNMA 3HO5H 3M1NA 1TZPA 3K7GB 4MUQA 1SZ7A 4F78A 2WG4A 4C4NA 1R44A 2C0JA 2WG3A 4OAKA 3KXCC 3N1MB 2J3WD 2J3WB 4MUSA 3N1RA 1VHHA 1LBUA 4OXDA 2IBGE 4MPHA 4OX3A 3N1QA 3K7JB 4MUTA 2BJNA 2VO9A 4JIDA 2J3TA 2C0JB 4NT9A 4C4MA 2CFHA 1WC8A 2J3RA 3N1OA 3K7HB 2PWNA 2WFXA
chains in the Genus database with same CATH topology
2OSDA 2OSOA 3NJCA 2J3TB 3KXCA 3CUED 3CUEB 2CFHC 2J3RB 1WC9A 1SZ7A 2C0JA 3KXCC 2J3WD 2J3WB 2BJNA 2J3TA 2C0JB 2CFHA 1WC8A 2J3RA 2PWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OSD A;  2OSO A;  3NJC A;  2J3T B;  3KXC A;  3CUE D;  3CUE B;  2CFH C;  2J3R B;  1WC9 A;  1SZ7 A;  2C0J A;  3KXC C;  2J3W D;  2J3W B;  2BJN A;  2J3T A;  2C0J B;  2CFH A;  1WC8 A;  2J3R A;  2PWN A; 
#chains in the Genus database with same CATH topology
 3N1F A;  2OSD A;  3D1M A;  3N1P B;  2OSO A;  4OX5 A;  2WFQ A;  3NJC A;  2J3T B;  3KXC A;  4MUR A;  2WFR A;  3MXW A;  3K7I B;  3N1G A;  3CUE D;  3CUE B;  2CFH C;  2J3R B;  1U10 A;  4D0Y A;  1WC9 A;  5HNM A;  3HO5 H;  3M1N A;  1TZP A;  3K7G B;  4MUQ A;  1SZ7 A;  4F78 A;  2WG4 A;  4C4N A;  1R44 A;  2C0J A;  2WG3 A;  4OAK A;  3KXC C;  3N1M B;  2J3W D;  2J3W B;  4MUS A;  3N1R A;  1VHH A;  1LBU A;  4OXD A;  2IBG E;  4MPH A;  4OX3 A;  3N1Q A;  3K7J B;  4MUT A;  2BJN A;  2VO9 A;  4JID A;  2J3T A;  2C0J B;  4NT9 A;  4C4M A;  2CFH A;  1WC8 A;  2J3R A;  3N1O A;  3K7H B;  2PWN A;  2WFX A; 
#chains in the Genus database with same CATH homology
 2OSD A;  2OSO A;  3NJC A;  2J3T B;  3KXC A;  3CUE D;  3CUE B;  2CFH C;  2J3R B;  1WC9 A;  1SZ7 A;  2C0J A;  3KXC C;  2J3W D;  2J3W B;  2BJN A;  2J3T A;  2C0J B;  2CFH A;  1WC8 A;  2J3R A;  2PWN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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