3KXRA

Structure of the cystathionine beta-synthase pair domain of the putative mg2+ transporter so5017 from shewanella oneidensis mr-1.
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
171
structure length
171
Chain Sequence
DLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Magnesium transporter, putative
publication title Structure of the cystathionine beta-synthase pair domain of the putative Mg2+ transporter SO5017 from Shewanella oneidensis MR-1.
rcsb
source organism Shewanella oneidensis mr-1
total genus 55
structure length 171
sequence length 171
ec nomenclature
pdb deposition date 2009-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.50.50 Mainly Alpha Up-down Bundle Pheromone ER-1 Pheromone ER-1 3kxrA01
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3kxrA02
4L3VA 3T4NC 3L2BA 2QH1A 3FWRA 1XKFA 2O16A 5LXQA 1YAVA 4L0DA 3LHHA 5MMZA 5K23C 4P1OA 3L31A 2EF7A 3K6EA 4GQYA 5K25C 2EMQA 4IY0A 4P1GA 3LFZA 4ESYA 4IYSA 2D4ZA 3FWSA 2OUXA 3K2VA 4GQVA 2RC3A 4NOCA 2P9MA 3LV9A 2UV6A 4O9KA 4GQWA 2OOYE 3OI8A 4COOA 3KPCA 3SL7A 3OCMA 5K22B 2OOXE 3I8NA 2QRDE 4DQWA 3PC3A 1PVMA 2QLVC 3HF7A 4ESYB 3TDHC 3OCOA 3KPBA 2YVZA 4FRYA 5K24C 2YZQA 4PCUA 3FV6A 3LQNA 3PC2A 4L27A 4L28A 2UV7A 3FNAA 5IIPA 4UUUA 2PFIA 1PBJA 3FHMA 2NYEA 2ZY9A 4IY4A 2UV5A 2QRCE 2UV4A 4FXSA 1O50A 2YZIA 3ORGA 4IY3A 3PC4A 3KH5A 5KS7A 3KXRA 2RIHA 2NYCA 2YVXA 3GBYA 3TE5C 2YVYA 2RIFA 1Y5HA 3DDJA 4IY2A 3KPDA 2QREE 4HG0A 2QR1E
chains in the Genus database with same CATH superfamily
2JA3A 4L3VA 4EDKA 4EDTA 3T4NC 3L2BA 2QH1A 3FWRA 1XKFA 2O16A 2AU3A 5LXQA 1YAVA 4L0DA 3LHHA 5MMZA 5K23C 4P1OA 2NSVA 3L31A 4EDVA 2EF7A 3K6EA 4GQYA 5K25C 2KC6A 2EMQA 4IY0A 3KLSA 1DDEA 4P1GA 4EDGA 3LFZA 4ESYA 2J9LA 4IYSA 2D4ZA 3FWSA 3CU7A 2OUXA 3K2VA 4GQVA 2RC3A 4NOCA 2P9MA 2NSWA 3LV9A 2UV6A 4O9KA 4GQWA 2OOYE 1EQNA 3OI8A 4COOA 3KPCA 2B39A 3SL7A 3OCMA 1DD9A 5K22B 2OOXE 3I8NA 2QRDE 4DQWA 3PC3A 1PVMA 2QLVC 2LMKA 3HF7A 4ESYB 3TDHC 3OCOA 3KPBA 2YVZA 4FRYA 5K24C 2YZQA 4PCUA 3FV6A 3LQNA 3PC2A 4L27A 4L28A 2UV7A 3FNAA 2ERLA 4UUUA 4EE1A 5IIPA 2PFIA 1PBJA 3FHMA 2ZY9A 2NYEA 4IY4A 2UV5A 2QRCE 2UV4A 4FXSA 1O50A 2YZIA 3ORGA 4IY3A 3PC4A 3KH5A 5KS7A 3KXRA 3B39A 2RIHA 2NYCA 2YVXA 3GBYA 2KK2A 1ERCA 3TE5C 2YVYA 4EDRA 2RIFA 2JMSA 4E2KA 1Y5HA 3DDJA 4IY2A 3KPDA 2QREE 4HG0A 2QR1E
chains in the Genus database with same CATH topology
2JA3A 4L3VA 4EDKA 4EDTA 3T4NC 3L2BA 2QH1A 3FWRA 1XKFA 2O16A 2AU3A 5LXQA 1YAVA 4L0DA 3LHHA 5MMZA 5K23C 4P1OA 2NSVA 3L31A 4EDVA 2EF7A 3K6EA 4GQYA 5K25C 2KC6A 2EMQA 4IY0A 3KLSA 1DDEA 4P1GA 4EDGA 3LFZA 4ESYA 2J9LA 4IYSA 2D4ZA 3FWSA 3CU7A 2OUXA 3K2VA 4GQVA 2RC3A 4NOCA 2P9MA 2NSWA 3LV9A 2UV6A 4O9KA 4GQWA 2OOYE 1EQNA 3OI8A 4COOA 3KPCA 2B39A 3SL7A 3OCMA 1DD9A 5K22B 2OOXE 3I8NA 2QRDE 4DQWA 3PC3A 1PVMA 2QLVC 2LMKA 3HF7A 4ESYB 3TDHC 3OCOA 3KPBA 2YVZA 4FRYA 5K24C 2YZQA 4PCUA 3FV6A 3LQNA 3PC2A 4L27A 4L28A 2UV7A 3FNAA 2ERLA 4UUUA 4EE1A 5IIPA 2PFIA 1PBJA 3FHMA 2ZY9A 2NYEA 4IY4A 2UV5A 2QRCE 2UV4A 4FXSA 1O50A 2YZIA 3ORGA 4IY3A 3PC4A 3KH5A 5KS7A 3KXRA 3B39A 2RIHA 2NYCA 2YVXA 3GBYA 2KK2A 1ERCA 3TE5C 2YVYA 4EDRA 2RIFA 2JMSA 4E2KA 1Y5HA 3DDJA 4IY2A 3KPDA 2QREE 4HG0A 2QR1E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L3V A;  3T4N C;  3L2B A;  2QH1 A;  3FWR A;  1XKF A;  2O16 A;  5LXQ A;  1YAV A;  4L0D A;  3LHH A;  5MMZ A;  5K23 C;  4P1O A;  3L31 A;  2EF7 A;  3K6E A;  4GQY A;  5K25 C;  2EMQ A;  4IY0 A;  4P1G A;  3LFZ A;  4ESY A;  4IYS A;  2D4Z A;  3FWS A;  2OUX A;  3K2V A;  4GQV A;  2RC3 A;  4NOC A;  2P9M A;  3LV9 A;  2UV6 A;  4O9K A;  4GQW A;  2OOY E;  3OI8 A;  4COO A;  3KPC A;  3SL7 A;  3OCM A;  5K22 B;  2OOX E;  3I8N A;  2QRD E;  4DQW A;  3PC3 A;  1PVM A;  2QLV C;  3HF7 A;  4ESY B;  3TDH C;  3OCO A;  3KPB A;  2YVZ A;  4FRY A;  5K24 C;  2YZQ A;  4PCU A;  3FV6 A;  3LQN A;  3PC2 A;  4L27 A;  4L28 A;  2UV7 A;  3FNA A;  5IIP A;  4UUU A;  2PFI A;  1PBJ A;  3FHM A;  2NYE A;  2ZY9 A;  4IY4 A;  2UV5 A;  2QRC E;  2UV4 A;  4FXS A;  1O50 A;  2YZI A;  3ORG A;  4IY3 A;  3PC4 A;  3KH5 A;  5KS7 A;  3KXR A;  2RIH A;  2NYC A;  2YVX A;  3GBY A;  3TE5 C;  2YVY A;  2RIF A;  1Y5H A;  3DDJ A;  4IY2 A;  3KPD A;  2QRE E;  4HG0 A;  2QR1 E; 
#chains in the Genus database with same CATH topology
 2JA3 A;  4L3V A;  4EDK A;  4EDT A;  3T4N C;  3L2B A;  2QH1 A;  3FWR A;  1XKF A;  2O16 A;  2AU3 A;  5LXQ A;  1YAV A;  4L0D A;  3LHH A;  5MMZ A;  5K23 C;  4P1O A;  2NSV A;  3L31 A;  4EDV A;  2EF7 A;  3K6E A;  4GQY A;  5K25 C;  2KC6 A;  2EMQ A;  4IY0 A;  3KLS A;  1DDE A;  4P1G A;  4EDG A;  3LFZ A;  4ESY A;  2J9L A;  4IYS A;  2D4Z A;  3FWS A;  3CU7 A;  2OUX A;  3K2V A;  4GQV A;  2RC3 A;  4NOC A;  2P9M A;  2NSW A;  3LV9 A;  2UV6 A;  4O9K A;  4GQW A;  2OOY E;  1EQN A;  3OI8 A;  4COO A;  3KPC A;  2B39 A;  3SL7 A;  3OCM A;  1DD9 A;  5K22 B;  2OOX E;  3I8N A;  2QRD E;  4DQW A;  3PC3 A;  1PVM A;  2QLV C;  2LMK A;  3HF7 A;  4ESY B;  3TDH C;  3OCO A;  3KPB A;  2YVZ A;  4FRY A;  5K24 C;  2YZQ A;  4PCU A;  3FV6 A;  3LQN A;  3PC2 A;  4L27 A;  4L28 A;  2UV7 A;  3FNA A;  2ERL A;  4UUU A;  4EE1 A;  5IIP A;  2PFI A;  1PBJ A;  3FHM A;  2ZY9 A;  2NYE A;  4IY4 A;  2UV5 A;  2QRC E;  2UV4 A;  4FXS A;  1O50 A;  2YZI A;  3ORG A;  4IY3 A;  3PC4 A;  3KH5 A;  5KS7 A;  3KXR A;  3B39 A;  2RIH A;  2NYC A;  2YVX A;  3GBY A;  2KK2 A;  1ERC A;  3TE5 C;  2YVY A;  4EDR A;  2RIF A;  2JMS A;  4E2K A;  1Y5H A;  3DDJ A;  4IY2 A;  3KPD A;  2QRE E;  4HG0 A;  2QR1 E; 
#chains in the Genus database with same CATH homology
 2JA3 A;  4L3V A;  4EDK A;  4EDT A;  3T4N C;  3L2B A;  2QH1 A;  3FWR A;  1XKF A;  2O16 A;  2AU3 A;  5LXQ A;  1YAV A;  4L0D A;  3LHH A;  5MMZ A;  5K23 C;  4P1O A;  2NSV A;  3L31 A;  4EDV A;  2EF7 A;  3K6E A;  4GQY A;  5K25 C;  2KC6 A;  2EMQ A;  4IY0 A;  3KLS A;  1DDE A;  4P1G A;  4EDG A;  3LFZ A;  4ESY A;  2J9L A;  4IYS A;  2D4Z A;  3FWS A;  3CU7 A;  2OUX A;  3K2V A;  4GQV A;  2RC3 A;  4NOC A;  2P9M A;  2NSW A;  3LV9 A;  2UV6 A;  4O9K A;  4GQW A;  2OOY E;  1EQN A;  3OI8 A;  4COO A;  3KPC A;  2B39 A;  3SL7 A;  3OCM A;  1DD9 A;  5K22 B;  2OOX E;  3I8N A;  2QRD E;  4DQW A;  3PC3 A;  1PVM A;  2QLV C;  2LMK A;  3HF7 A;  4ESY B;  3TDH C;  3OCO A;  3KPB A;  2YVZ A;  4FRY A;  5K24 C;  2YZQ A;  4PCU A;  3FV6 A;  3LQN A;  3PC2 A;  4L27 A;  4L28 A;  2UV7 A;  3FNA A;  2ERL A;  4UUU A;  4EE1 A;  5IIP A;  2PFI A;  1PBJ A;  3FHM A;  2ZY9 A;  2NYE A;  4IY4 A;  2UV5 A;  2QRC E;  2UV4 A;  4FXS A;  1O50 A;  2YZI A;  3ORG A;  4IY3 A;  3PC4 A;  3KH5 A;  5KS7 A;  3KXR A;  3B39 A;  2RIH A;  2NYC A;  2YVX A;  3GBY A;  2KK2 A;  1ERC A;  3TE5 C;  2YVY A;  4EDR A;  2RIF A;  2JMS A;  4E2K A;  1Y5H A;  3DDJ A;  4IY2 A;  3KPD A;  2QRE E;  4HG0 A;  2QR1 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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