3L0AA

Crystal structure of putative exonuclease (rer070207002219) from eubacterium rectale at 2.19 a resolution
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
266
structure length
266
Chain Sequence
GMQLTSENYYSQEANKEYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPEIFTQKGELKANFKQAEEIIARIERDEYFMKYMSGQKQVIMTGELFGAKWKIKMDSYIPGVAIVDLKVMASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNTGEKLPFFIAGATKQTEPDIRIIHVTDNYLQEALHMVEMNMPRILRVKNGEVEPDRCELCDCCRHNRVLKKPISIMDLTAGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Putative exonuclease (RER070207002219) from Eubacterium rectale at 2.19 A resolution
rcsb
source organism Eubacterium rectale
molecule tags Hydrolase
molecule keywords Putative exonuclease
total genus 70
structure length 266
sequence length 266
ec nomenclature
pdb deposition date 2009-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12684 DUF3799 PDDEXK-like domain of unknown function (DUF3799)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.320.10 Alpha Beta Alpha-Beta Complex Lambda Exonuclease; Chain A Lambda Exonuclease; Chain A 3l0aA00
3K70B 3H4RA 3L0AA 4WUZA 5LD2B 3SLPA 3U4QA 4CEJA 3K93A 3U44A 3SM4A 4R5QA 4CEIA 3SZ5A 3SYYA 1W36B 4IC1A 4CEHA 3SZ4A 1AVQA
chains in the Genus database with same CATH superfamily
3SLPA 3SM4A 3M32C 3M2RC 5A8KC 3SZ5A 4IC1A 3SYYA 3SZ4A 4CEHA 3M30C 5G0RC 4CEJA 4R5QA 4CEIA 1HBMC 5A8RC 3K70B 3L0AA 3M1VC 4WUZA 5A8WC 1HBOC 1HBNC 3K93A 5A0YC 3U44A 1W36B 3SQGC 3POTC 1HBUC 3H4RA 5LD2B 3M2VC 1E6VC 1MROC 1E6YC 3M2UC 3U4QA 1AVQA
chains in the Genus database with same CATH topology
3K70B 3H4RA 3L0AA 4WUZA 5LD2B 3SLPA 3U4QA 4CEJA 3K93A 3U44A 3SM4A 4R5QA 4CEIA 3SZ5A 3SYYA 1W36B 4IC1A 4CEHA 3SZ4A 1AVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K70 B;  3H4R A;  3L0A A;  4WUZ A;  5LD2 B;  3SLP A;  3U4Q A;  4CEJ A;  3K93 A;  3U44 A;  3SM4 A;  4R5Q A;  4CEI A;  3SZ5 A;  3SYY A;  1W36 B;  4IC1 A;  4CEH A;  3SZ4 A;  1AVQ A; 
#chains in the Genus database with same CATH topology
 3SLP A;  3SM4 A;  3M32 C;  3M2R C;  5A8K C;  3SZ5 A;  4IC1 A;  3SYY A;  3SZ4 A;  4CEH A;  3M30 C;  5G0R C;  4CEJ A;  4R5Q A;  4CEI A;  1HBM C;  5A8R C;  3K70 B;  3L0A A;  3M1V C;  4WUZ A;  5A8W C;  1HBO C;  1HBN C;  3K93 A;  5A0Y C;  3U44 A;  1W36 B;  3SQG C;  3POT C;  1HBU C;  3H4R A;  5LD2 B;  3M2V C;  1E6V C;  1MRO C;  1E6Y C;  3M2U C;  3U4Q A;  1AVQ A; 
#chains in the Genus database with same CATH homology
 3K70 B;  3H4R A;  3L0A A;  4WUZ A;  5LD2 B;  3SLP A;  3U4Q A;  4CEJ A;  3K93 A;  3U44 A;  3SM4 A;  4R5Q A;  4CEI A;  3SZ5 A;  3SYY A;  1W36 B;  4IC1 A;  4CEH A;  3SZ4 A;  1AVQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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