3L0WA

Structure of split monoubiquitinated pcna with ubiquitin in position two
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Replication
molecule keywords Proliferating cell nuclear antigen
publication title Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 30
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3l0wA00
2AWAA 2AVTA 1OK7A 4K3MA 3PWEA 2XURA 1JQJA 1VPKA 3L10A 4K3SA 4N95A 4K3OA 4PNVA 3BEPA 4TR6A 5AGVA 1UNNA 4OVGA 5FVEA 5AH4A 5FRQA 3P16A 3Q4JA 4K74A 3F1VA 3D1FA 3Q4KA 4N97A 4K3QA 4TSZA 1MMIA 4TR8A 2POLA 3Q4LA 3L0XA 3D1EA 4MJQA 4N9AA 3RB9A 1JQLA 4K3LA 4TR7A 4K3RA 4TRTA 3D1GA 3L0WA 3QSBB 4PNWA 4MJPA 4S3IA 4PNUA 4MJRA 4OVFA 4N94A 4N98A 4N99A 4OVHA 3PGEB 5AGUA 3T0PA 4K3KA 4RKIA 4N96A 5AH2A 4K3PA 3QSBA
chains in the Genus database with same CATH superfamily
2AWAA 2AVTA 1OK7A 4K3MA 3PWEA 2XURA 1JQJA 1VPKA 3L10A 4K3SA 4N95A 4K3OA 4PNVA 3BEPA 4TR6A 3L0XB 5AGVA 3PGEA 1UNNA 4OVGA 5FVEA 5AH4A 5FRQA 3L0WB 3P16A 3Q4JA 4K74A 3F1VA 3D1FA 3Q4KA 4N97A 4K3QA 4TSZA 1MMIA 4TR8A 2POLA 3Q4LA 3L0XA 3D1EA 4MJQA 4N9AA 3RB9A 1JQLA 4K3LA 4TR7A 4K3RA 4TRTA 3D1GA 3L0WA 3QSBB 4PNWA 4MJPA 4S3IA 4PNUA 4MJRA 4OVFA 4N94A 4N98A 4N99A 4OVHA 3L10B 3PGEB 5AGUA 3T0PA 4K3KA 4RKIA 4N96A 5AH2A 4K3PA 3QSBA
chains in the Genus database with same CATH topology
2AWAA 2AVTA 1OK7A 4K3MA 3PWEA 2XURA 1JQJA 1VPKA 3L10A 4K3SA 4N95A 4K3OA 4PNVA 3BEPA 4TR6A 5AGVA 1UNNA 4OVGA 5FVEA 5AH4A 5FRQA 3P16A 3Q4JA 4K74A 3F1VA 3D1FA 3Q4KA 4N97A 4K3QA 4TSZA 1MMIA 4TR8A 2POLA 3Q4LA 3L0XA 3D1EA 4MJQA 4N9AA 3RB9A 1JQLA 4K3LA 4TR7A 4K3RA 4TRTA 3D1GA 3L0WA 3QSBB 4PNWA 4MJPA 4S3IA 4PNUA 4MJRA 4OVFA 4N94A 4N98A 4N99A 4OVHA 3PGEB 5AGUA 3T0PA 4K3KA 4RKIA 4N96A 5AH2A 4K3PA 3QSBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AWA A;  2AVT A;  1OK7 A;  4K3M A;  3PWE A;  2XUR A;  1JQJ A;  1VPK A;  3L10 A;  4K3S A;  4N95 A;  4K3O A;  4PNV A;  3BEP A;  4TR6 A;  5AGV A;  1UNN A;  4OVG A;  5FVE A;  5AH4 A;  5FRQ A;  3P16 A;  3Q4J A;  4K74 A;  3F1V A;  3D1F A;  3Q4K A;  4N97 A;  4K3Q A;  4TSZ A;  1MMI A;  4TR8 A;  2POL A;  3Q4L A;  3L0X A;  3D1E A;  4MJQ A;  4N9A A;  3RB9 A;  1JQL A;  4K3L A;  4TR7 A;  4K3R A;  4TRT A;  3D1G A;  3L0W A;  3QSB B;  4PNW A;  4MJP A;  4S3I A;  4PNU A;  4MJR A;  4OVF A;  4N94 A;  4N98 A;  4N99 A;  4OVH A;  3PGE B;  5AGU A;  3T0P A;  4K3K A;  4RKI A;  4N96 A;  5AH2 A;  4K3P A;  3QSB A; 
#chains in the Genus database with same CATH topology
 2AWA A;  2AVT A;  1OK7 A;  4K3M A;  3PWE A;  2XUR A;  1JQJ A;  1VPK A;  3L10 A;  4K3S A;  4N95 A;  4K3O A;  4PNV A;  3BEP A;  4TR6 A;  3L0X B;  5AGV A;  3PGE A;  1UNN A;  4OVG A;  5FVE A;  5AH4 A;  5FRQ A;  3L0W B;  3P16 A;  3Q4J A;  4K74 A;  3F1V A;  3D1F A;  3Q4K A;  4N97 A;  4K3Q A;  4TSZ A;  1MMI A;  4TR8 A;  2POL A;  3Q4L A;  3L0X A;  3D1E A;  4MJQ A;  4N9A A;  3RB9 A;  1JQL A;  4K3L A;  4TR7 A;  4K3R A;  4TRT A;  3D1G A;  3L0W A;  3QSB B;  4PNW A;  4MJP A;  4S3I A;  4PNU A;  4MJR A;  4OVF A;  4N94 A;  4N98 A;  4N99 A;  4OVH A;  3L10 B;  3PGE B;  5AGU A;  3T0P A;  4K3K A;  4RKI A;  4N96 A;  5AH2 A;  4K3P A;  3QSB A; 
#chains in the Genus database with same CATH homology
 2AWA A;  2AVT A;  1OK7 A;  4K3M A;  3PWE A;  2XUR A;  1JQJ A;  1VPK A;  3L10 A;  4K3S A;  4N95 A;  4K3O A;  4PNV A;  3BEP A;  4TR6 A;  5AGV A;  1UNN A;  4OVG A;  5FVE A;  5AH4 A;  5FRQ A;  3P16 A;  3Q4J A;  4K74 A;  3F1V A;  3D1F A;  3Q4K A;  4N97 A;  4K3Q A;  4TSZ A;  1MMI A;  4TR8 A;  2POL A;  3Q4L A;  3L0X A;  3D1E A;  4MJQ A;  4N9A A;  3RB9 A;  1JQL A;  4K3L A;  4TR7 A;  4K3R A;  4TRT A;  3D1G A;  3L0W A;  3QSB B;  4PNW A;  4MJP A;  4S3I A;  4PNU A;  4MJR A;  4OVF A;  4N94 A;  4N98 A;  4N99 A;  4OVH A;  3PGE B;  5AGU A;  3T0P A;  4K3K A;  4RKI A;  4N96 A;  5AH2 A;  4K3P A;  3QSB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...