3L0XA

Structure of split yeast pcna
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords Proliferating cell nuclear antigen
publication title Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 28
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3l0xA00
1UNNA 3PWEA 4OVGA 3Q4LA 4N97A 4MJPA 5AGUA 3PGEB 1VPKA 4TRTA 4PNVA 4K74A 4TR8A 3T0PA 3Q4JA 3D1GA 2XURA 5AGVA 3BEPA 4N98A 1MMIA 3Q4KA 4S3IA 1JQJA 3L0XA 4K3OA 4MJRA 4OVFA 3QSBB 4K3QA 4N99A 3D1EA 2AWAA 4MJQA 3QSBA 4N95A 2POLA 4TR7A 4K3LA 3D1FA 5FVEA 4RKIA 4TSZA 1OK7A 4OVHA 4K3PA 5FRQA 3RB9A 4K3RA 4K3SA 1JQLA 4PNWA 4TR6A 3P16A 3F1VA 4K3MA 4N94A 3L0WA 5AH2A 4PNUA 3L10A 4K3KA 5AH4A 4N9AA 2AVTA 4N96A
chains in the Genus database with same CATH superfamily
1UNNA 3PWEA 4OVGA 3Q4LA 4N97A 4MJPA 5AGUA 3PGEB 1VPKA 4TRTA 4PNVA 3PGEA 4K74A 4TR8A 3Q4JA 3D1GA 2XURA 5AGVA 3T0PA 4N98A 3BEPA 1MMIA 3L0XB 3Q4KA 4S3IA 1JQJA 3L0XA 4K3OA 4MJRA 4OVFA 3QSBB 4K3QA 4N99A 3D1EA 2AWAA 4MJQA 3QSBA 4N95A 2POLA 4TR7A 4K3LA 3D1FA 5FVEA 4RKIA 4TSZA 1OK7A 4OVHA 4K3PA 5FRQA 3RB9A 4K3RA 4K3SA 1JQLA 4PNWA 4TR6A 3P16A 3F1VA 3L0WB 3L10B 4K3MA 4N94A 3L0WA 5AH2A 4PNUA 3L10A 4K3KA 5AH4A 4N9AA 2AVTA 4N96A
chains in the Genus database with same CATH topology
1UNNA 3PWEA 4OVGA 3Q4LA 4N97A 4MJPA 5AGUA 3PGEB 1VPKA 4TRTA 4PNVA 4K74A 4TR8A 3T0PA 3Q4JA 3D1GA 2XURA 5AGVA 3BEPA 4N98A 1MMIA 3Q4KA 4S3IA 1JQJA 3L0XA 4K3OA 4MJRA 4OVFA 3QSBB 4K3QA 4N99A 3D1EA 2AWAA 4MJQA 3QSBA 4N95A 2POLA 4TR7A 4K3LA 3D1FA 5FVEA 4RKIA 4TSZA 1OK7A 4OVHA 4K3PA 5FRQA 3RB9A 4K3RA 4K3SA 1JQLA 4PNWA 4TR6A 3P16A 3F1VA 4K3MA 4N94A 3L0WA 5AH2A 4PNUA 3L10A 4K3KA 5AH4A 4N9AA 2AVTA 4N96A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UNN A;  3PWE A;  4OVG A;  3Q4L A;  4N97 A;  4MJP A;  5AGU A;  3PGE B;  1VPK A;  4TRT A;  4PNV A;  4K74 A;  4TR8 A;  3T0P A;  3Q4J A;  3D1G A;  2XUR A;  5AGV A;  3BEP A;  4N98 A;  1MMI A;  3Q4K A;  4S3I A;  1JQJ A;  3L0X A;  4K3O A;  4MJR A;  4OVF A;  3QSB B;  4K3Q A;  4N99 A;  3D1E A;  2AWA A;  4MJQ A;  3QSB A;  4N95 A;  2POL A;  4TR7 A;  4K3L A;  3D1F A;  5FVE A;  4RKI A;  4TSZ A;  1OK7 A;  4OVH A;  4K3P A;  5FRQ A;  3RB9 A;  4K3R A;  4K3S A;  1JQL A;  4PNW A;  4TR6 A;  3P16 A;  3F1V A;  4K3M A;  4N94 A;  3L0W A;  5AH2 A;  4PNU A;  3L10 A;  4K3K A;  5AH4 A;  4N9A A;  2AVT A;  4N96 A; 
#chains in the Genus database with same CATH topology
 1UNN A;  3PWE A;  4OVG A;  3Q4L A;  4N97 A;  4MJP A;  5AGU A;  3PGE B;  1VPK A;  4TRT A;  4PNV A;  3PGE A;  4K74 A;  4TR8 A;  3Q4J A;  3D1G A;  2XUR A;  5AGV A;  3T0P A;  4N98 A;  3BEP A;  1MMI A;  3L0X B;  3Q4K A;  4S3I A;  1JQJ A;  3L0X A;  4K3O A;  4MJR A;  4OVF A;  3QSB B;  4K3Q A;  4N99 A;  3D1E A;  2AWA A;  4MJQ A;  3QSB A;  4N95 A;  2POL A;  4TR7 A;  4K3L A;  3D1F A;  5FVE A;  4RKI A;  4TSZ A;  1OK7 A;  4OVH A;  4K3P A;  5FRQ A;  3RB9 A;  4K3R A;  4K3S A;  1JQL A;  4PNW A;  4TR6 A;  3P16 A;  3F1V A;  3L0W B;  3L10 B;  4K3M A;  4N94 A;  3L0W A;  5AH2 A;  4PNU A;  3L10 A;  4K3K A;  5AH4 A;  4N9A A;  2AVT A;  4N96 A; 
#chains in the Genus database with same CATH homology
 1UNN A;  3PWE A;  4OVG A;  3Q4L A;  4N97 A;  4MJP A;  5AGU A;  3PGE B;  1VPK A;  4TRT A;  4PNV A;  4K74 A;  4TR8 A;  3T0P A;  3Q4J A;  3D1G A;  2XUR A;  5AGV A;  3BEP A;  4N98 A;  1MMI A;  3Q4K A;  4S3I A;  1JQJ A;  3L0X A;  4K3O A;  4MJR A;  4OVF A;  3QSB B;  4K3Q A;  4N99 A;  3D1E A;  2AWA A;  4MJQ A;  3QSB A;  4N95 A;  2POL A;  4TR7 A;  4K3L A;  3D1F A;  5FVE A;  4RKI A;  4TSZ A;  1OK7 A;  4OVH A;  4K3P A;  5FRQ A;  3RB9 A;  4K3R A;  4K3S A;  1JQL A;  4PNW A;  4TR6 A;  3P16 A;  3F1V A;  4K3M A;  4N94 A;  3L0W A;  5AH2 A;  4PNU A;  3L10 A;  4K3K A;  5AH4 A;  4N9A A;  2AVT A;  4N96 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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