3L10A

Structure of split monoubiquitinated pcna with ubiquitin in position one
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Replication
molecule keywords Proliferating cell nuclear antigen
publication title Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 30
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3l10A00
4TSZA 4K74A 1MMIA 3Q4LA 3QSBA 3L0XA 4N99A 1JQJA 2XURA 3Q4KA 4RKIA 3PGEB 3BEPA 1VPKA 1JQLA 3F1VA 4MJPA 4TR8A 3PWEA 5AGVA 4TR6A 4K3KA 5AH2A 4TR7A 5FRQA 3D1GA 4K3PA 3QSBB 4K3QA 4PNVA 4N96A 4TRTA 2POLA 4MJRA 4S3IA 2AVTA 1UNNA 4N95A 4PNWA 3D1FA 4OVHA 3RB9A 3Q4JA 3P16A 4OVGA 3D1EA 2AWAA 5FVEA 4N94A 4N98A 4K3LA 1OK7A 4K3MA 4N97A 4OVFA 5AGUA 5AH4A 4K3SA 3L0WA 4N9AA 3T0PA 3L10A 4K3OA 4MJQA 4K3RA 4PNUA
chains in the Genus database with same CATH superfamily
4TSZA 4K74A 1MMIA 3Q4LA 3QSBA 3L0XA 4N99A 1JQJA 2XURA 3Q4KA 4RKIA 3PGEB 3BEPA 3L0WB 1VPKA 1JQLA 3F1VA 4MJPA 3L10B 4TR8A 3PWEA 5AGVA 4TR6A 4K3KA 5AH2A 4TR7A 5FRQA 3D1GA 4K3PA 3L0XB 3QSBB 4K3QA 4PNVA 4N96A 4TRTA 2POLA 4MJRA 4S3IA 2AVTA 1UNNA 4N95A 4PNWA 3D1FA 4OVHA 3RB9A 3Q4JA 3P16A 4OVGA 3D1EA 2AWAA 5FVEA 4N94A 4N98A 4K3LA 1OK7A 4K3MA 4N97A 4OVFA 5AGUA 5AH4A 4K3SA 3L0WA 4N9AA 3T0PA 3L10A 3PGEA 4K3OA 4MJQA 4K3RA 4PNUA
chains in the Genus database with same CATH topology
4TSZA 4K74A 1MMIA 3Q4LA 3QSBA 3L0XA 4N99A 1JQJA 2XURA 3Q4KA 4RKIA 3PGEB 3BEPA 1VPKA 1JQLA 3F1VA 4MJPA 4TR8A 3PWEA 5AGVA 4TR6A 4K3KA 5AH2A 4TR7A 5FRQA 3D1GA 4K3PA 3QSBB 4K3QA 4PNVA 4N96A 4TRTA 2POLA 4MJRA 4S3IA 2AVTA 1UNNA 4N95A 4PNWA 3D1FA 4OVHA 3RB9A 3Q4JA 3P16A 4OVGA 3D1EA 2AWAA 5FVEA 4N94A 4N98A 4K3LA 1OK7A 4K3MA 4N97A 4OVFA 5AGUA 5AH4A 4K3SA 3L0WA 4N9AA 3T0PA 3L10A 4K3OA 4MJQA 4K3RA 4PNUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TSZ A;  4K74 A;  1MMI A;  3Q4L A;  3QSB A;  3L0X A;  4N99 A;  1JQJ A;  2XUR A;  3Q4K A;  4RKI A;  3PGE B;  3BEP A;  1VPK A;  1JQL A;  3F1V A;  4MJP A;  4TR8 A;  3PWE A;  5AGV A;  4TR6 A;  4K3K A;  5AH2 A;  4TR7 A;  5FRQ A;  3D1G A;  4K3P A;  3QSB B;  4K3Q A;  4PNV A;  4N96 A;  4TRT A;  2POL A;  4MJR A;  4S3I A;  2AVT A;  1UNN A;  4N95 A;  4PNW A;  3D1F A;  4OVH A;  3RB9 A;  3Q4J A;  3P16 A;  4OVG A;  3D1E A;  2AWA A;  5FVE A;  4N94 A;  4N98 A;  4K3L A;  1OK7 A;  4K3M A;  4N97 A;  4OVF A;  5AGU A;  5AH4 A;  4K3S A;  3L0W A;  4N9A A;  3T0P A;  3L10 A;  4K3O A;  4MJQ A;  4K3R A;  4PNU A; 
#chains in the Genus database with same CATH topology
 4TSZ A;  4K74 A;  1MMI A;  3Q4L A;  3QSB A;  3L0X A;  4N99 A;  1JQJ A;  2XUR A;  3Q4K A;  4RKI A;  3PGE B;  3BEP A;  3L0W B;  1VPK A;  1JQL A;  3F1V A;  4MJP A;  3L10 B;  4TR8 A;  3PWE A;  5AGV A;  4TR6 A;  4K3K A;  5AH2 A;  4TR7 A;  5FRQ A;  3D1G A;  4K3P A;  3L0X B;  3QSB B;  4K3Q A;  4PNV A;  4N96 A;  4TRT A;  2POL A;  4MJR A;  4S3I A;  2AVT A;  1UNN A;  4N95 A;  4PNW A;  3D1F A;  4OVH A;  3RB9 A;  3Q4J A;  3P16 A;  4OVG A;  3D1E A;  2AWA A;  5FVE A;  4N94 A;  4N98 A;  4K3L A;  1OK7 A;  4K3M A;  4N97 A;  4OVF A;  5AGU A;  5AH4 A;  4K3S A;  3L0W A;  4N9A A;  3T0P A;  3L10 A;  3PGE A;  4K3O A;  4MJQ A;  4K3R A;  4PNU A; 
#chains in the Genus database with same CATH homology
 4TSZ A;  4K74 A;  1MMI A;  3Q4L A;  3QSB A;  3L0X A;  4N99 A;  1JQJ A;  2XUR A;  3Q4K A;  4RKI A;  3PGE B;  3BEP A;  1VPK A;  1JQL A;  3F1V A;  4MJP A;  4TR8 A;  3PWE A;  5AGV A;  4TR6 A;  4K3K A;  5AH2 A;  4TR7 A;  5FRQ A;  3D1G A;  4K3P A;  3QSB B;  4K3Q A;  4PNV A;  4N96 A;  4TRT A;  2POL A;  4MJR A;  4S3I A;  2AVT A;  1UNN A;  4N95 A;  4PNW A;  3D1F A;  4OVH A;  3RB9 A;  3Q4J A;  3P16 A;  4OVG A;  3D1E A;  2AWA A;  5FVE A;  4N94 A;  4N98 A;  4K3L A;  1OK7 A;  4K3M A;  4N97 A;  4OVF A;  5AGU A;  5AH4 A;  4K3S A;  3L0W A;  4N9A A;  3T0P A;  3L10 A;  4K3O A;  4MJQ A;  4K3R A;  4PNU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...